Help us debug minirosetta.

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Profile dekim
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Message 3762 - Posted: 19 Feb 2008, 19:12:40 UTC
Last modified: 19 Feb 2008, 19:14:34 UTC

We are looking into the credit granting variation. It might be due to less checkpointing so we\'ll add more checkpoints in the near future, likely the next update.

edit: I\'ll also look into the optimizations being used.

The current app, 1.08, should require less memory, ~90mb depending on the size of the protein being worked on.

If people are getting stuck mini jobs, please report them. We may have to add the same watch dog as in the old rosetta app to prevent jobs from being stuck for too long if this is an actual issue.

The new pdb symbols file is

http://ralph.bakerlab.org/download/minirosetta_1.08_windows_intelx86.pdb

it is 27MB!




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alexpoon

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Message 3769 - Posted: 20 Feb 2008, 11:48:38 UTC

Does it enable the graphics?
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AdeB
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Message 3773 - Posted: 20 Feb 2008, 14:52:51 UTC - in response to Message 3755.  

I\'m sometimes getting double of what I\'m claiming.

These are my last three Mini tasks (Linux)
CPU time (sec)  	claimed credit  	granted credit
 	13,005.13  	31.92  			50.88
 	13,564.10  	33.29  			50.73
	12,407.80  	30.77  			50.87



In contrast, it seems like I get exactly what I claim on Beta tasks.


Not all linux machines get more credit than claimed.
My mobile AMD Athlon(tm) XP2500+ gets less than half of claimed, on Beta tasks it got more.
On my AMD Athlon(tm) XP 2000+ there isn\'t much difference between Mini and Beta tasks
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Evan

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Message 3776 - Posted: 20 Feb 2008, 23:15:16 UTC
Last modified: 20 Feb 2008, 23:15:41 UTC

This one became stuck after 50%. However, after closing and restarting boinc it completed successfully. The fault was apparently an Unhandled Exception Detected
work unit 779962
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Billy

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Message 3777 - Posted: 21 Feb 2008, 3:54:45 UTC
Last modified: 21 Feb 2008, 3:56:10 UTC

This one got stuck at 64%.
I stopped and started Boinc and it completed right away.

score13_hb_envtest62_A_1ig5A_3299_4107_0
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Harrison Neal

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Message 3788 - Posted: 23 Feb 2008, 20:28:42 UTC

Is it just me or does the new mini-Rosetta (1.08 vs. 1.07) seem to stall at 0% for about 20-30 minutes (while using 100% CPU), and thereafter quickly progress?

For reference, this seems to be happening on Xubuntu 7.10 32-bit; processors range from Intel Pentium IIs and AMD K6s to Intel Pentium IVs and AMD Athlon XPs. I\'m not sure if this is a bug in the sense; it might just take a while to initialize. It could also be a setting on these computers, which is why I\'m asking if anyone else has seen this - I don\'t believe I ever saw this happen on 1.07, only now with 1.08 (although I could have easily missed seeing this with 1.07).
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Message 3789 - Posted: 23 Feb 2008, 22:12:46 UTC - in response to Message 3788.  

Is it just me or does the new mini-Rosetta (1.08 vs. 1.07) seem to stall at 0% for about 20-30 minutes (while using 100% CPU), and thereafter quickly progress?

Hello Harrison Neal,
Saw the same: mini-Rosetta 1.08 seems to stall (or initializing) at 0 % for about 12 minutes.
The 1.07 did the same for about 2 or 5 minutes, on my machine.
I\'m running Windows XP home on a one core AMD sempron 3000+, 1.8 G Hz.

Have a nice day,
Path7.
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Message 3790 - Posted: 24 Feb 2008, 0:22:11 UTC

I just had 6 minutes using win xp. Right now it is just guessing in the dark. Perhaps when the graphics come along all will be revealed.
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Message 3799 - Posted: 26 Feb 2008, 7:13:30 UTC - in response to Message 3695.  

... we ask that you download our application symbols file on windows platforms so that we can get debugging information.


Does this symbols file still apply with Minirosetta 1.08?

==Mike

Don't believe everything you think.
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Message 3800 - Posted: 26 Feb 2008, 13:47:14 UTC
Last modified: 26 Feb 2008, 13:48:10 UTC

See Message 3762 earlier in this thread, there is a seperate 1.08 symbols file. Note how the name directly matches the application name, except for the file extension.
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Message 3802 - Posted: 26 Feb 2008, 18:06:10 UTC - in response to Message 3800.  

Note how the name directly matches the application name, except for the file extension.

Thanks. That\'s why I suspected I was using the wrong one. Sorry I missed the earlier post.

==Mike

Don't believe everything you think.
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Profile David Emigh
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Message 3804 - Posted: 27 Feb 2008, 1:29:26 UTC

I have the .pdb file for 1.08 downloaded to two WinXp crunchers.

When the time comes to update to 1.09, what is the procedure?

Will a download of the .pdb file for 1.09 overwrite the 1.08 version?

I have plenty of disk space, so I don\'t mind having excess files hanging around, but will the 1.08 symbols interfere with the 1.09 debugging?
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Message 3805 - Posted: 27 Feb 2008, 10:56:11 UTC - in response to Message 3804.  

When the time comes to update to 1.09, what is the procedure?

When the new pdb symbols file like http://ralph.bakerlab.org/download/minirosetta_1.09_windows_intelx86.pdb will become available, just copy it into your Ralph project folder near the minirosetta_1.08_windows_intelx86.pdb and minirosetta_1.09_windows_intelx86.exe, just as it was said in Message 3695.

Will a download of the .pdb file for 1.09 overwrite the 1.08 version?

No. You can delete it manually after finshing last 1.08 task. (Maybe, to be on safe side, better after you\'ll notice, that the 1.08 exe automagically disappeared from your Ralph folder?)

I have plenty of disk space, so I don\'t mind having excess files hanging around, but will the 1.08 symbols interfere with the 1.09 debugging?

No, it will not. You can also happily leave it there.

Peter
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Profile David Emigh
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Message 3806 - Posted: 27 Feb 2008, 15:03:58 UTC

Thank you! =)
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Message 3827 - Posted: 12 Mar 2008, 21:15:16 UTC - in response to Message 3805.  

When the new pdb symbols file like http://ralph.bakerlab.org/download/minirosetta_1.09_windows_intelx86.pdb will become available...


Peter,
The 1.09 version is available now...48MB!

==Mike
Don't believe everything you think.
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Message 3828 - Posted: 12 Mar 2008, 22:16:36 UTC - in response to Message 3827.  

When the new pdb symbols file like http://ralph.bakerlab.org/download/minirosetta_1.09_windows_intelx86.pdb will become available...

The 1.09 version is available now...48MB!

Thanks, Mike. I\'ve noticed it too, it is already waiting (and compressed to 18MB) two days long in my projects\' folders, to be paired with any bugy apps. I\'ve just got the first 3 pieces today (but they finished healthy, again nothing to report about)-;

Peter
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Message boards : Current tests : Help us debug minirosetta.



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