Bug Reports for Minirosetta v1.39

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Profile ChertseyAl
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Message 4327 - Posted: 31 Oct 2008, 19:21:01 UTC

This WU took ages to run:

http://ralph.bakerlab.org/workunit.php?wuid=1035623
http://ralph.bakerlab.org/result.php?resultid=1174535

I have my prefs set to 1 hour WUs, and generally WUs take between 40 minutes and three hours.

This one seemed to nearly complete, but the last few percent took the bulk of the CPU time.

Also, seems to have granted very little credit for the time use: Claimed 80.05, granted 14.59 - Not worried about the credit, but it\'s almost as if the task completed, then restarted?


<snippage>
recovering checkpoint of tag S_00000001 with id stage4_kk_1
recovering checkpoint of tag S_00000001 with id stage4_kk_2
recovering checkpoint of tag S_00000001 with id stage4_kk_3
recovering checkpoint of tag S_00000001 with id abrelax_relax
======================================================
DONE :: 1 starting structures 16112 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
recovering checkpoint of tag S_00000001 with id abrelax_rg_state
recovering checkpoint of tag S_00000001 with id stage_1
recovering checkpoint of tag S_00000001 with id stage_2
recovering checkpoint of tag S_00000001 with id stage_3_iter1_1
<snippage>
recovering checkpoint of tag S_00000001 with id stage4_kk_2
recovering checkpoint of tag S_00000001 with id stage4_kk_3
recovering checkpoint of tag S_00000001 with id abrelax_relax
======================================================
DONE :: 1 starting structures 36444.4 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish


XP Pro, 32 bit FWIW.



Al.


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nissse

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Message 4328 - Posted: 31 Oct 2008, 23:22:14 UTC

lör 1 nov 2008 00.05.39|ralph@home|Task relax_lbench_mtyka_test_1dzo_IGNORE_THE_REST_F_00009_0000062_0_5244_1_0 exited with zero status but no \'finished\' file

lör 1 nov 2008 00.05.39|ralph@home|If this happens repeatedly you may need to reset the project.

lör 1 nov 2008 00.05.39|ralph@home|Restarting task relax_lbench_mtyka_test_1dzo_IGNORE_THE_REST_F_00009_0000062_0_5244_1_0 using minirosetta version 139
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AdeB
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Message 4329 - Posted: 1 Nov 2008, 16:17:45 UTC

resultid=1175219

stderr out:
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
# cpu_run_time_pref: 14400
SIGSEGV: segmentation violation
Stack trace (9 frames):
[0x8b104a7]
[0x8b3aba0]
[0xffffe420]
[0x82c2ab0]
[0x82c171a]
[0x819f626]
[0x804c2ea]
[0x8b9669c]
[0x8048111]

Exiting...

</stderr_txt>
]]>
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Path7

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Message 4332 - Posted: 2 Nov 2008, 23:09:22 UTC
Last modified: 2 Nov 2008, 23:11:56 UTC

This WU kept on restarting after 28 minutes:

2-11-2008 22:55:13|ralph@home|Task relax_lbench_mtyka_test_1unp_IGNORE_THE_REST_F_00003_0001556_0_5244_1_1 exited
with a DLL initialization error.
2-11-2008 22:55:13|ralph@home|If this happens repeatedly you may need to reboot your computer.
2-11-2008 22:55:14|ralph@home|Restarting task relax_lbench_mtyka_test_1unp_IGNORE_THE_REST_F_00003_0001556_0_5244_1_1
using minirosetta version 139

Rebooting my computer didn\'t help, so I aborted the WU

Have a nice day,
Path7.
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mtyka
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Message 4333 - Posted: 3 Nov 2008, 19:39:15 UTC

Thanks to everyone posting about the problems with the relax_lbench WUs.
I\'ve identified the problem and fixed it - new version is coming out imminently. Sorry about the inconvenience, if you still are getting these WUs then please abort them.

Cheers, Mike
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Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.39



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