Minirosetta 1.83-1.85

Message boards : RALPH@home bug list : Minirosetta 1.83-1.85

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mtyka
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Message 4883 - Posted: 23 Jul 2009, 23:15:10 UTC

Hunting for some sporadic bugs - a series of tests.
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Profile Conan
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Message 4884 - Posted: 24 Jul 2009, 10:20:22 UTC

Another 1.83 error

<core_client_version>6.4.5</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
[2009- 7-24 16:26:32:] :: BOINC:: Initializing ... ok.
[2009- 7-24 16:26:32:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulphides not found in command line top-level context

See this WU

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Message 4885 - Posted: 24 Jul 2009, 10:22:55 UTC

This is a 1.84 error

<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-24 19:34: 8:] :: BOINC:: Initializing ... ok.
[2009- 7-24 19:34: 8:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev31588.zip
Unpacking WU data ...
Unpacking data: ../../projects/ralph.bakerlab.org/CRY_2ovo_csfragments_v3.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
ERROR:: Exit from: ..\..\src\core\conformation\Conformation.cc line: 1628
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

See [url=http://ralph.bakerlab.org/workunit.php?wuid=1383822[this WU[/url]

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Message 4886 - Posted: 25 Jul 2009, 23:57:49 UTC

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AdeB
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Message 4888 - Posted: 26 Jul 2009, 20:51:47 UTC

1.85 error

Task: 1563379
Workunit: lr8_seq_score12_noss_rlbn_1vkk_IGNORE_THE_REST_NATIVE_11954_1

[color=red]ERROR: Option matching -in:detect_disulfides not found in command line top-level context
[/color]


AdeB
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Aegis Maelstrom

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Message 4910 - Posted: 5 Aug 2009, 1:51:51 UTC

Not exactly an error but these WUs took a pretty long time, like nearly 6 hrs each for just one decoy on a Pentium M.

We may call it a long running WU. I have recently seen such things in Rosetta as well - I guess it's a question of a new science.

1562765
1562881
1563010
1563093
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Odysseus

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Message 4911 - Posted: 6 Aug 2009, 10:47:40 UTC

Thu  6 Aug 04:34:23 2009|ralph@home|Sending scheduler request: To fetch work.  Requesting 3329 seconds of work, reporting 0 completed tasks
Thu  6 Aug 04:34:28 2009|ralph@home|Scheduler request succeeded: got 0 new tasks
Thu  6 Aug 04:34:28 2009|ralph@home|Message from server: Server error: can't attach shared memory

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Path7

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Message 4914 - Posted: 6 Aug 2009, 18:08:54 UTC - in response to Message 4911.  

Thu  6 Aug 04:34:23 2009|ralph@home|Sending scheduler request: To fetch work.  Requesting 3329 seconds of work, reporting 0 completed tasks
Thu  6 Aug 04:34:28 2009|ralph@home|Scheduler request succeeded: got 0 new tasks
Thu  6 Aug 04:34:28 2009|ralph@home|Message from server: Server error: can't attach shared memory


Hello Odysseus,

It's strange the servers are partly down: Server Status Page
This has been mentioned in these threads:
Can't report work, Server Error : Can't attach shared memory
RALPH down a couple of days

Still no reaction from the Team.
We have to be patient....

Path7.
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Message boards : RALPH@home bug list : Minirosetta 1.83-1.85



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