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Posts for this series of work units were being posted under thread "Minirosetta 2.12" so I thought I would create one for the current series of work units.
On WU 1831281
Had this error
ERROR: Cannot open patchdock file: 1fAc_2odh.patchdock
ERROR:: Exit from: src/protocols/ProteinInterfaceDesign/read_patchdock.cc line: 101
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Had this WU 1834847 that reached 86.402% completion sometime between 6 and 7 hours run time, it was still at 86.402% after 19 hours 21 minutes so I aborted it.
If I have read the slot directory right then it did 167 checkpoints but just did not progress.
My preferences are set for 6 hours so the WU should of timed out for taking so long, if it still had not finished the first decoy then the WU has a problem.
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ERROR: ERROR: FragmentIO: could not open file myoglobin.frag9.rosetta.tab
ERROR:: Exit from: ..\..\src\core\fragment\FragmentIO.cc line: 258
BOINC:: Error reading and gzipping output datafile: default.out
On This WU
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parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1
http://ralph.bakerlab.org/workunit.php?wuid=1631447
This unit crashed in similiar fashion at both hosts crunching it.
http://ralph.bakerlab.org/result.php?resultid=1848472
2010-05-28 07:30:03 ralph@home Output file parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1_0 for task parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1 absent
# cpu_run_time_pref: 28800
======================================================
DONE :: 50 starting structures 28554.5 cpu seconds
This process generated 50 decoys from 50 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
</stderr_txt>
<message>
<file_xfer_error>
<file_name>parvalbumin_redo_targets_CONTROL_BOINC_abrelax.score12.fastrelax.v1_SAVE_ALL_OUT_14803_2_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>
]]>
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1849542
ERROR: Unable to open weights. Neither ./pcs.weight1.patch nor minirosetta_database\scoring/weights/pcs.weight1.patch.wts_patchexist
ERROR:: Exit from: ..\..\src\core\scoring\ScoreFunction.cc line: 262
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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1849542
ERROR: Unable to open weights. Neither ./pcs.weight1.patch nor minirosetta_database\scoring/weights/pcs.weight1.patch.wts_patchexist
ERROR:: Exit from: ..\..\src\core\scoring\ScoreFunction.cc line: 262
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
Same error on 3 work units
1849128
1849129
1849130
Also had a file transfer error (XFER ERROR)
on 1848730
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[quote]1849542
ERROR: Unable to open weights. Neither ./pcs.weight1.patch nor minirosetta_database\scoring/weights/pcs.weight1.patch.wts_patchexist
ERROR:: Exit from: ..\..\src\core\scoring\ScoreFunction.cc line: 262
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
Here is another with the same error
1849490
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Completed successfully and validated, but with an odd error message:
ERROR: ERROR: Residue not supported by Placement coordinate constraint machinery
ERROR:: Exit from: ..\..\src\protocols\ProteinInterfaceDesign\movers\PlaceUtils.cc line: 281
called boinc_finish
http://ralph.bakerlab.org/result.php?resultid=1851904
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Same here:
1851619 |
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No work, no debug.... :-) |
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No work, no debug.... :-)
oh, well....thank you!!
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Another batch of this series and another batch of computation errors!
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SAXS-rescore-1eovA__14879_15
Mon Sep 6 12:03:24 2010 ralph@home Output file SAXS-rescore-1eovA__14879_15_0_0 for task SAXS-rescore-1eovA__14879_15_0 absent
======================================================
DONE :: 1 starting structures 12857.1 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
</stderr_txt>
<message>
<file_xfer_error>
<file_name>SAXS-rescore-1eovA__14879_15_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error> |
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SAXS-rescore-1ks9A__14879_6_1
The same error as Snagletooth.
ma 06 sep 2010 17:07:49 CEST ralph@home Output file SAXS-rescore-1ks9A__14879_6_1_0 for task SAXS-rescore-1ks9A__14879_6_1 absent
stderr out:
======================================================
DONE :: 1 starting structures 13314.1 cpu seconds
This process generated 9 decoys from 9 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
</stderr_txt>
<message>
<file_xfer_error>
<file_name>SAXS-rescore-1ks9A__14879_6_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
AdeB |
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No luck here either on those "SAXS-rescore".
For 13 tasks crunched so far on two machines (1 windows, 1 linux), all 13 got "computation error".
<message>
<file_xfer_error>
<file_name>SAXS-rescore-1tf4B__14879_16_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>
</message>
For Your Information.
EDIT
I just saw one WU finish on win7, got to 100% and then this:
2010-09-06 22:37:57 ralph@home Output file SAXS-rescore-1mgtA__14879_16_0_0 for task SAXS-rescore-1mgtA__14879_16_0 absent
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Same here 1906579 |
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Another one here |
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SAXS-rescore-1qfjC__14882_5_0
stderr out:
ERROR: ERROR: Unable to open silent_input file: 'default.out'
ERROR:: Exit from: src/core/io/silent/SilentFileData.cc line: 86
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
Watchdog active.
AdeB |
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Compute error in WU: SAXS-rescore-1eudA__14881_3_1 with the following error:
ERROR: Option file open failed for: 1eudA-linker_sampler_protocol-saxs-1.0.flags |
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All SAXS tasks erroed out
<file_xfer_error>
<file_name>SAXS-rescore-1gcyA__14879_3_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error> after finishing wu's (cca 42 000 s).
XP 32bit SAXS-rescore-1bi5A__14879_2_1, SAXS-rescore-1mgtA__14879_12_0
XP 64bit SAXS-rescore-1gcyA__14879_3_0, SAXS-rescore-1d5rA__14879_7_1, SAXS-rescore-1dzfA__14879_15_1
No credit granted. |
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ERROR: ERROR: Unable to open silent_input file: 'default.out'
ERROR:: Exit from: ..\..\src\core\io\silent\SilentFileData.cc line: 86
BOINC:: Error reading and gzipping output datafile: default.out
Had the above error on
1907858
1907812
1907755
1907712
1907941
Had the File XFer Error on
1907101
1907068
1906880
1906866
1907147
1907190
1907193
Had ERROR: Option file open failed for:
1907659
1907584
1907600
1907904
Most work units have been failing but a few recent ones are now running OK.
Thanks
Conan.
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The last one XP 64bit File Xfer Error
SAXS-rescore-1jpmA__14879_17_1 |
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Post deleted due to my lack of research before opening my mouth.
=Mike
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Don't believe everything you think. |
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SAXS batch strikes back. This time with new twist. They end right after the start.
I got several of those already. No luck for SAXS ;)
e.g. WU named SAXS-score-1kbwC__14888_2_0 http://ralph.bakerlab.org/result.php?resultid=1912150
ERROR: Option file open failed for: 1kbwC-linker_sampler_protocol.flags
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I also got a weights error and a filexfer error on SAXS WU's.
=Mike
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Don't believe everything you think. |
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Some more errors,
ERROR: Unable to open weights. Neither ./../saxs_cen_patch-1.0 nor minirosetta_database\scoring/weights/../saxs_cen_patch-1.0.wts_patchexist
ERROR:: Exit from: ..\..\src\core\scoring\ScoreFunction.cc line: 262
BOINC:: Error reading and gzipping output datafile: default.out
Had the above error on
1913600
1913175
1913758
1913909
1914146
1914233
1912897
1914118
1914136
1914137
1914530
Also had "file xfer Error" on
1912783
1912825
Hope you are getting to the cause of the errors.
Conan.
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1916074
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option file open failed for: 1knyA-linker_sampler_protocol.flags
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