Minirosetta Beta 3.14

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Profile Conan
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Message 5357 - Posted: 21 Jul 2011, 2:34:52 UTC

Here is another error

ERROR: ERROR: FragmentIO: could not open file frags_w_cs_wt_200.11mers
ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 230
BOINC:: Error reading and gzipping output datafile: default.out

On 2083601

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Message 5359 - Posted: 22 Jul 2011, 21:14:16 UTC

2078238

ERROR: ct == final_atoms
ERROR:: Exit from: ..\..\..\src\core\scoring\rms_util.cc line: 524
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5360 - Posted: 23 Jul 2011, 16:01:00 UTC

Work Units 2081438 and 2081487

Both failed with "Maximum elapsed time exceeded"

Conan

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Message 5361 - Posted: 26 Jul 2011, 20:09:39 UTC

2092449

ERROR: ERROR: FragmentIO: could not open file frags_w_cs_wt_200.11mers
ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 230
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5367 - Posted: 2 Aug 2011, 10:40:46 UTC

33 failures (complete batch) this morning all failing with 'Client Error'

http://ralph.bakerlab.org/results.php?userid=527

Example error:-

<core_client_version>6.12.33</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2011- 8- 2 10:28:58:] :: BOINC:: Initializing ... ok.
[2011- 8- 2 10:28:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev42272.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Tag::read - parse error, printing backtrace.

Tag::read - parse error - file:istream line:5 column:1 - </SFXN5>
Tag::read - parse error - file:istream line:5 column:1 - ^

Tag::read - parse error - file:istream line:6 column:1 - </SCOREFXNS>
Tag::read - parse error - file:istream line:6 column:1 - ^

Tag::read - parse error - file:istream line:9 column:1 - </FILTERS>
Tag::read - parse error - file:istream line:9 column:1 - ^

Tag::read - parse error - file:istream line:13 column:1 - </TASKOPERATIONS>
Tag::read - parse error - file:istream line:13 column:1 - ^

Tag::read - parse error - file:istream line:15 column:1 - <FlxbbDesign name=flxbb ncycles=3 sfxn_design=SFXN5 sfxn_relax=SFXN5 SFXN5 clear_all_residues=1 task_operations=limitchi2,layer_allclear_all_residues=0 blueprint="master.blueprint" constraints_NtoC=1.0 />
Tag::read - parse error - file:istream line:15 column:1 - ^

Tag::read - parse error - file:istream line:14 column:1 - <MOVERS>
Tag::read - parse error - file:istream line:14 column:1 - ^

Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: ..\..\..\src\utility\tag\Tag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>
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Profile [VENETO] boboviz

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Message 5368 - Posted: 2 Aug 2011, 17:55:55 UTC - in response to Message 5367.  
Last modified: 2 Aug 2011, 17:56:22 UTC

33 failures (complete batch) this morning all failing with 'Client Error'

ERROR: false
ERROR:: Exit from: ..\..\..\src\utility\tag\Tag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Same here after few seconds
2111200
and others 30 wus....
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Message 5371 - Posted: 3 Aug 2011, 14:09:41 UTC
Last modified: 3 Aug 2011, 14:10:15 UTC

Yes same Error here as well (although I did a few work units that ran OK).

Tag::read - parse error, printing backtrace.

Tag::read - parse error - file:istream line:5 column:1 - </SFXN5>
Tag::read - parse error - file:istream line:5 column:1 - ^

Tag::read - parse error - file:istream line:6 column:1 - </SCOREFXNS>
Tag::read - parse error - file:istream line:6 column:1 - ^

Tag::read - parse error - file:istream line:9 column:1 - </FILTERS>
Tag::read - parse error - file:istream line:9 column:1 - ^

Tag::read - parse error - file:istream line:13 column:1 - </TASKOPERATIONS>
Tag::read - parse error - file:istream line:13 column:1 - ^

Tag::read - parse error - file:istream line:15 column:1 - <FlxbbDesign name=flxbb ncycles=3 sfxn_design=SFXN5 sfxn_relax=SFXN5 SFXN5 clear_all_residues=1 task_operations=limitchi2,layer_allclear_all_residues=0 blueprint="master.blueprint" constraints_NtoC=1.0 />
Tag::read - parse error - file:istream line:15 column:1 - ^

Tag::read - parse error - file:istream line:14 column:1 - <MOVERS>
Tag::read - parse error - file:istream line:14 column:1 - ^

Tag::read - parse error - file:istream line:1 column:1 - <dock_design>
Tag::read - parse error - file:istream line:1 column:1 - ^


ERROR: false
ERROR:: Exit from: ..\..\..\src\utility\tag\Tag.cc line: 387
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

On Work units
2112936
2112877
2112918
2112933
2112861
2112941
2112898
2112851
2112893
2112934
2112900
2112847
2112940

Conan
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svincent

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Message 5375 - Posted: 12 Aug 2011, 22:02:53 UTC

Task 2136909 (3stub_patch_CYCA_1sq2_ProteinInterfaceDesign_11Aug2011_15516_1_0) failed on Mac with a Compute Error.



SIGPIPE: write on a pipe with no reader
0 0x00ba68b9 SIGPIPE: write on a pipe with no reader

etc.
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Profile [VENETO] boboviz

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Message 5384 - Posted: 26 Aug 2011, 7:51:22 UTC

2171363

Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00996545 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...

********************
BOINC Windows Runtime Debugger Version 6.5.0

Dump Timestamp : 08/26/11 09:15:30
Install Directory : C:\Programmi\BOINC\
Data Directory : C:\Documents and Settings\All Users\Dati applicazioni\BOINC
Project Symstore : http://boinc.bakerlab.org/rosetta/symstore
Loaded Library : C:\Programmi\BOINC\\dbghelp.dll
Loaded Library : C:\Programmi\BOINC\\symsrv.dll
Loaded Library : C:\Programmi\BOINC\\srcsrv.dll
LoadLibraryA( C:\Programmi\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll

</stderr_txt>
]]>
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Message 5387 - Posted: 9 Sep 2011, 1:07:45 UTC

Pls check this one out... Ran for 21.5 ksec and looks like it finished fine after 901 decoys, but someone else had already sent in a bad one, so mine was marker as a 'validate error' ???

2178636
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Profile [VENETO] boboviz

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Message 5390 - Posted: 12 Sep 2011, 6:35:16 UTC

All wu in error:

2179787
2179786
2179786
etc, etc

ERROR: in::file::boinc_wu_zip 1uaoA.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 167
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile [SG-FC] dingdong

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Message 5391 - Posted: 12 Sep 2011, 14:26:17 UTC

All 80 abrelax ended with client error / compute error

Task ID 2179800
Name 2WWEA_abrelax_15647_3_0
Workunit 1921159
Created 12 Sep 2011 5:49:30 UTC
Sent 12 Sep 2011 5:52:07 UTC
Received 12 Sep 2011 14:18:59 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 20656
Report deadline 16 Sep 2011 5:52:07 UTC
CPU time 2.059213
stderr out <core_client_version>6.12.33</core_client_version>
<![CDATA[
<message>
Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2011- 9-12 15:49:49:] :: BOINC:: Initializing ... ok.
[2011- 9-12 15:49:49:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev42272.zip
Unpacking WU data ...

ERROR: in::file::boinc_wu_zip 1uaoA.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 167
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>


Validate state Invalid
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Profile Conan
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Message 5392 - Posted: 13 Sep 2011, 12:49:27 UTC

Had this one fail
Result 2185423

ERROR: in::file::boinc_wu_zip 1uaoA.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 167
BOINC:: Error reading and gzipping output datafile: default.out


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Profile [VENETO] boboviz

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Message 5402 - Posted: 31 Oct 2011, 15:54:53 UTC

Why we are running a lot of 3.14?? Now last version in 3.17.....
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Profile robertmiles

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Message 5407 - Posted: 1 Nov 2011, 16:35:59 UTC - in response to Message 5402.  
Last modified: 1 Nov 2011, 16:37:00 UTC

Could be trying to track down a bug with 3.14 that I saw several times over on Rosetta@Home. If so, something to watch for: Shortly after a checkpoint, the workunit stops using any CPU time at all, WITHOUT telling BOINC it has encountered a problem so that some other workunit can be started instead. If so, the time limit checking cannot run, so the workunit can easily sit there looking like it's running, but not actually doing anything, for many times as long as you've selected for workunits to run.
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Message boards : RALPH@home bug list : Minirosetta Beta 3.14



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