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Profile [VENETO] boboviz

Joined: Apr 9 08
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Message 5477 - Posted 14 Mar 2012 14:11:25 UTC

    New version is out, boys...

    Profile [VENETO] boboviz

    Joined: Apr 9 08
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    Message 5478 - Posted 14 Mar 2012 20:41:26 UTC

      2613022

      Starting watchdog...
      Watchdog active.
      dof_atom1 atomno= 3 rsd= 1
      atom1 atomno= 1 rsd= 1
      atom2 atomno= 2 rsd= 1
      atom3 atomno= 5 rsd= 1
      atom4 atomno= 6 rsd= 1
      THETA1 1.#QNAN
      THETA3 1.#QNAN
      PHI2 2.14542

      ERROR: AtomTree::torsion_angle_dof_id: angle range error
      ERROR:: Exit from: ..\..\..\src\core\kinematics\AtomTree.cc line: 771
      BOINC:: Error reading and gzipping output datafile: default.out
      called boinc_finish

      Profile Conan
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      Message 5479 - Posted 15 Mar 2012 7:07:22 UTC

        Had an error on this one2614017

        Process exited with code 193 (0xc1, -63)

        SIGSEGV: segmentation violation
        Stack trace (18 frames):
        [0xa858057]
        [0xf771b400]
        [0xa55e7bf]
        [0x9b30785]
        [0x9b16cff]
        [0x9b1db00]
        [0x9d24392]
        [0x9bd61a9]
        [0x8a84a27]
        [0x8a3a683]
        [0x93c09a0]
        [0x93c336a]
        [0x954a627]
        [0x95b06f5]
        [0x95adf25]
        [0x80547ed]
        [0xa8e7f78]
        [0x8048131]

        Conan
        ____________

        Profile [VENETO] boboviz

        Joined: Apr 9 08
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        Credit: 743,230
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        Message 5480 - Posted 15 Mar 2012 19:35:45 UTC

          2609531

          Starting watchdog...
          Watchdog active.
          Hbond tripped: [2012- 3-15 11:33:52:]
          bounds error (radius = -1.#IND, val = -1.#IND), def = SOGFUNC 4 6.401 4.665 0.016 9.375 3.973 0.048 9.521 4.214 0.036 18.3 7.3 0.9

          ERROR: Fatal SOGFunc_Impl error.
          ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\SOGFunc_Impl.cc line: 181
          BOINC:: Error reading and gzipping output datafile: default.out
          called boinc_finish

          </stderr_txt>

          Profile [VENETO] boboviz

          Joined: Apr 9 08
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          Message 5481 - Posted 21 Mar 2012 11:39:27 UTC

            2621729

            Hbond tripped: [2012- 3-21 12:15:20:]
            bounds error (radius = -1.#IND, val = -1.#IND), def = SOGFUNC 2 5.84 2.956 0.153 18.3 7.3 0.847

            ERROR: Fatal SOGFunc_Impl error.
            ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\SOGFunc_Impl.cc line: 181
            BOINC:: Error reading and gzipping output datafile: default.out
            called boinc_finish

            Profile [VENETO] boboviz

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            Message 5485 - Posted 27 Mar 2012 10:24:11 UTC

              2622618

              Setting WU description ...
              Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev47790.zip
              Unpacking WU data ...
              Unpacking data: ../../projects/ralph.bakerlab.org/test_data.zip
              Setting database description ...
              Setting up checkpointing ...
              Setting up graphics native ...
              Setting up folding (abrelax) ...

              ERROR: ERROR: FragmentIO: could not open file test_aa0000109_05.200_v1_3
              ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
              BOINC:: Error reading and gzipping output datafile: default.out
              called boinc_finish

              Profile [VENETO] boboviz

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              Message 5486 - Posted 27 Mar 2012 12:05:22 UTC

                Validate error on 2622620

                Starting watchdog...
                Watchdog active.
                ======================================================
                DONE :: 99 starting structures 2803.54 cpu seconds
                This process generated 99 decoys from 99 attempts
                ======================================================
                BOINC :: WS_max 1.00688e+008

                BOINC :: Watchdog shutting down...
                BOINC :: BOINC support services shutting down cleanly ...
                called boinc_finish

                </stderr_txt>
                ]]>

                Validate state Invalid

                Snagletooth

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                Message 5487 - Posted 27 Mar 2012 12:07:41 UTC

                  test_pose_BB_perturbation_JOBID_SAVE_ALL_OUT_17702_91_0

                  process exited with code 1 (0x1, -255)

                  ERROR: Cannot open PDB file "pose_BB"
                  ERROR:: Exit from: src/core/import_pose/import_pose.cc line: 184
                  BOINC:: Error reading and gzipping output datafile: default.out
                  called boinc_finish



                  Profile [VENETO] boboviz

                  Joined: Apr 9 08
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                  Message 5488 - Posted 27 Mar 2012 19:46:52 UTC - in response to Message 5485.

                    2622618

                    ERROR: ERROR: FragmentIO: could not open file test_aa0000109_05.200_v1_3
                    ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
                    BOINC:: Error reading and gzipping output datafile: default.out
                    called boinc_finish


                    Today, bad day. Another wu with same error (on win7)

                    2624062

                    And 2624064 with this error

                    ERROR: Cannot open PDB file "pose_BB"
                    ERROR:: Exit from: ..\..\..\src\core\import_pose\import_pose.cc line: 184
                    BOINC:: Error reading and gzipping output datafile: default.out
                    called boinc_finish

                    Profile [VENETO] boboviz

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                    Message 5489 - Posted 31 Mar 2012 12:04:38 UTC

                      All errors on win 7 (32 and 64 bit):
                      2625843
                      2625844
                      2625845
                      2625846


                      ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                      ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
                      BOINC:: Error reading and gzipping output datafile: default.out
                      called boinc_finish


                      Please, stop this batch

                      Profile Conan
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                      Message 5490 - Posted 31 Mar 2012 12:52:39 UTC - in response to Message 5489.

                        All errors on win 7 (32 and 64 bit):
                        2625843
                        2625844
                        2625845
                        2625846


                        ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                        ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
                        BOINC:: Error reading and gzipping output datafile: default.out
                        called boinc_finish


                        Please, stop this batch


                        Same Error on Linux 64 bit, ALL work units Error out.

                        ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                        ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 162
                        BOINC:: Error reading and gzipping output datafile: default.out
                        called boinc_finish

                        See the following Work Units
                        2626834
                        2626869
                        2626908
                        2626909
                        2626975
                        2627013
                        2627086

                        Conan

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                        Trotador

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                        Message 5491 - Posted 31 Mar 2012 14:09:56 UTC

                          Same here windows 7 and linux both 64 bits. All crashed with that same error.

                          regards

                          Monty

                          Joined: Feb 21 12
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                          Message 5492 - Posted 31 Mar 2012 14:39:58 UTC

                            And here on a Vista Home Premium 32-Bit machine:

                            ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                            ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
                            BOINC:: Error reading and gzipping output datafile: default.out
                            called boinc_finish

                            Monty

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                            Message 5493 - Posted 31 Mar 2012 20:40:53 UTC - in response to Message 5492.

                              Here is another type on the same machine:

                              ERROR: Cannot open PDB file "pose_BB"
                              ERROR:: Exit from: ..\..\..\src\core\import_pose\import_pose.cc line: 184
                              BOINC:: Error reading and gzipping output datafile: default.out
                              called boinc_finish

                              TPCBF

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                              Message 5494 - Posted 31 Mar 2012 21:05:54 UTC - in response to Message 5490.

                                Same Error on Linux 64 bit, ALL work units Error out.

                                ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                                Likewise, getting the same error on all WUs, running Windows XP Pro SP3 32Bit...

                                Ralf

                                Profile [VENETO] boboviz

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                                Message 5496 - Posted 1 Apr 2012 7:18:45 UTC

                                  I repeat: please, stop this batch!!

                                  Snagletooth

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                                  Message 5497 - Posted 1 Apr 2012 12:08:14 UTC

                                    t7_fd.c.82-85.i.3-74_abinitio_SAVE_ALL_OUT_17707_xxx

                                    All of these are failing immediately on my mac with:

                                    ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                                    ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 162

                                    TPCBF

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                                    Message 5498 - Posted 1 Apr 2012 20:15:39 UTC - in response to Message 5494.

                                      Same Error on Linux 64 bit, ALL work units Error out.

                                      ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
                                      Likewise, getting the same error on all WUs, running Windows XP Pro SP3 32Bit...

                                      Ralf
                                      Got 4 more of those WUs this morning, same result, all terminated within seconds, with the same error message...

                                      :-(

                                      Ralf

                                      Profile Conan
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                                      Message 5499 - Posted 1 Apr 2012 23:34:27 UTC

                                        Well out of dozens of failures I managed to have just the ONE SUCCESS

                                        2633954 is successful

                                        Conan
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                                        Profile vaughan

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                                        Message 5500 - Posted 2 Apr 2012 9:52:53 UTC

                                          WTF is going on.

                                          Over the last few days every task running version 3.24 fails in less than 30 seconds. Now some inane message about a limit on the number of tasks is showing up. Hey RALPH that's your fault not mine.

                                          Please abort this batch and restore the task quotas ASAP.
                                          ____________

                                          TPCBF

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                                          Message 5501 - Posted 2 Apr 2012 23:34:37 UTC

                                            And two more failing WUs today, same issue as the last two days...

                                            And the silence from the project is deafening... :-(

                                            I could understand that nobody responds over the weekend, but by now it's 4pm on Monday...

                                            Ralf

                                            TPCBF

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                                            Message 5502 - Posted 4 Apr 2012 3:11:48 UTC

                                              Just got two new WUs for Rosetta Mini 3.24 and the first one already started and is crunching for 5min and 5%, so it looks like this might actually finish for a change.

                                              The WU btw is AB4_H3-3_3dkm_ProteinInterfaceDesign_17Feb2012_17714_1_0

                                              Ralf

                                              TPCBF

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                                              Message 5504 - Posted 4 Apr 2012 19:15:37 UTC

                                                Ok, and this morning got two more 3.24 WUs, both failed again within seconds... :-(

                                                Ralf

                                                TPCBF

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                                                Message 5506 - Posted 4 Apr 2012 19:37:14 UTC - in response to Message 5504.

                                                  Ok, and this morning got two more 3.24 WUs, both failed again within seconds... :-(

                                                  Ralf
                                                  Ok, just a couple of minutes ago, another 3.24 WU arrived and seem to process normally again...

                                                  Job01_CD3E_CD3E_1tyj_ProteinInterfaceDesign_4Apr2012_17715_1

                                                  Profile [VENETO] boboviz

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                                                  Message 5507 - Posted 4 Apr 2012 20:18:57 UTC

                                                    Last modified: 4 Apr 2012 20:59:26 UTC

                                                    2639056

                                                    Name Job01_CD3E_CD3E_1u6t_ProteinInterfaceDesign_4Apr2012_17715_1_0
                                                    Workunit 2325955
                                                    Created 4 Apr 2012 19:23:19 UTC
                                                    Sent 4 Apr 2012 19:23:28 UTC
                                                    Received 4 Apr 2012 20:15:18 UTC
                                                    Server state Over
                                                    Outcome Client error
                                                    Client state Compute error
                                                    Exit status 1 (0x1)
                                                    Report deadline 8 Apr 2012 19:23:28 UTC
                                                    CPU time 1594.003

                                                    Profile Conan
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                                                    Message 5508 - Posted 5 Apr 2012 0:55:31 UTC

                                                      Last modified: 5 Apr 2012 1:08:21 UTC

                                                      All work units today on my Linux machines are producing this error (also a few Windows ones as well)

                                                      ERROR: Fatal Error in VDW_Energy
                                                      ERROR:: Exit from: src/core/scoring/methods/VDW_Energy.cc line: 169
                                                      BOINC:: Error reading and gzipping output datafile: default.out

                                                      See 2640046
                                                      See 2640032
                                                      See 2640056
                                                      See 2639860(Win)

                                                      Conan
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                                                      Profile Conan
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                                                      Message 5509 - Posted 5 Apr 2012 1:07:42 UTC

                                                        This Wu failed with the following error

                                                        ERROR: Option matching -score:pro_close_planar_constraint not found in command line top-level context

                                                        See 2640115

                                                        Conan
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                                                        Profile Conan
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                                                        Message 5510 - Posted 5 Apr 2012 1:08:47 UTC

                                                          The following Windows WUs failed with this error

                                                          ERROR: [ERROR] Error opening symmetry file '/work/dimaio/projects/casp9/T0534/run_12/symmdef/3edvB_101_C2.symm'
                                                          ERROR:: Exit from: ..\..\..\src\core\conformation\symmetry\SymmData.cc line: 535
                                                          BOINC:: Error reading and gzipping output datafile: default.out

                                                          See 2639851
                                                          See 2639832

                                                          Conan
                                                          ____________

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