Bug reports for 5.66-5.68

Message boards : RALPH@home bug list : Bug reports for 5.66-5.68

To post messages, you must log in.

Previous · 1 · 2 · 3 · 4 · Next

AuthorMessage
Profile Conan
Avatar

Send message
Joined: 16 Feb 06
Posts: 362
Credit: 1,368,421
RAC: 0
Message 3177 - Posted: 27 May 2007, 10:25:42 UTC - in response to Message 3171.  

3 failures
Work Unit http://ralph.bakerlab.org/result.php?resultid=529839 failed with Exit code 1, Error exit from: hbonds.cc line: 648
Work Unit http://ralph.bakerlab.org/result.php?resultid=531669 failed with Exit code 1, Error exit from: hbonds.cc line: 624
Work Unit http://ralph.bakerlab.org/result.php?resultid=531753 failed with Exit code 193, SIGSEGV, Segmentation Violation.

Hope this helps.


Another 2 failed after only 3 minutes

http://ralph.bakerlab.org/result.php?resultid=532538
http://ralph.bakerlab.org/result.php?resultid=532562

both failed with this error

process exited with code 1 (0x1)
trouble finding jump_templates_RNA_basepairs_v2.dat
ERROR:: Exit from: read_paths.cc line: 360


Another one with the same error as above

http://ralph.bakerlab.org/result.php?resultid=532003
ID: 3177 · Report as offensive    Reply Quote
Profile [B^S] BOINC-SG

Send message
Joined: 3 Jan 07
Posts: 2
Credit: 2,520
RAC: 0
Message 3180 - Posted: 27 May 2007, 21:38:35 UTC

These two results crashed, after I upgraded BOINC from 5.8.16 to 5.9.12:

http://ralph.bakerlab.org/result.php?resultid=530801

http://ralph.bakerlab.org/result.php?resultid=530709

Not sure if they there actually running while upgrading, but option \"Leave in memory while suspended\" is enabled...

Cheers, Shai


My NEW BOINC-Site

Why people joined BOINC Synergy...
ID: 3180 · Report as offensive    Reply Quote
HTH

Send message
Joined: 6 Mar 06
Posts: 9
Credit: 10,226
RAC: 0
Message 3182 - Posted: 29 May 2007, 11:51:50 UTC

Computation error: 533221.
ID: 3182 · Report as offensive    Reply Quote
Profile anders n

Send message
Joined: 16 Feb 06
Posts: 166
Credit: 131,419
RAC: 0
Message 3183 - Posted: 29 May 2007, 16:44:19 UTC

This WU did a crash and burn when the computer ran out of VM.

Anders n
ID: 3183 · Report as offensive    Reply Quote
Odysseus

Send message
Joined: 4 May 07
Posts: 23
Credit: 16,331
RAC: 0
Message 3184 - Posted: 30 May 2007, 2:50:23 UTC

After a fair run of successes my G5 Mac got a computation error (no crash AFAICT) with exit code 1 (0x1), running v5.68 on gp04__BOINC_SYMM_FOLD_AND_DOCK_RELAX_SUBSYSTEM-gp04_-delC126__2078_10 after a little over six hours of crunching. The system had been running with the screensaver blacked out and the display sleeping for at least twelve hours. The output ends with
ERROR:: Exit from: hbonds.cc line: 636

ID: 3184 · Report as offensive    Reply Quote
Rhiju
Volunteer moderator
Project developer
Project scientist

Send message
Joined: 14 Feb 06
Posts: 161
Credit: 3,725
RAC: 0
Message 3185 - Posted: 30 May 2007, 6:18:59 UTC - in response to Message 3184.  

Hi: Yea I wish I\'d seen all these crashes before sending out the same job to Rosetta@home. The first jobs that came back seemed OK -- now I realize that its because all the adversely affected computers were taking suuuper long and then crashed. We didn\'t expect those workunits to have such big memory footprints, so we\'ll have to spend a bit of time debugging.

After a fair run of successes my G5 Mac got a computation error (no crash AFAICT) with exit code 1 (0x1), running v5.68 on gp04__BOINC_SYMM_FOLD_AND_DOCK_RELAX_SUBSYSTEM-gp04_-delC126__2078_10 after a little over six hours of crunching. The system had been running with the screensaver blacked out and the display sleeping for at least twelve hours. The output ends with
ERROR:: Exit from: hbonds.cc line: 636



ID: 3185 · Report as offensive    Reply Quote
RAD-Poland

Send message
Joined: 6 Apr 07
Posts: 6
Credit: 100,029
RAC: 0
Message 3187 - Posted: 2 Jun 2007, 5:17:33 UTC
Last modified: 2 Jun 2007, 5:19:14 UTC

Work Unit http://ralph.bakerlab.org/result.php?resultid=534823 failed with Exit code 1, ERROR:: Exit from: barcode_classes.cc line: 576
Work Unit http://ralph.bakerlab.org/result.php?resultid=535524 failed with Exit code 1, ERROR:: Exit from: fragments.cc line: 691
ID: 3187 · Report as offensive    Reply Quote
Profile RodEllery

Send message
Joined: 20 Feb 06
Posts: 5
Credit: 8,820
RAC: 0
Message 3188 - Posted: 4 Jun 2007, 7:27:52 UTC
Last modified: 4 Jun 2007, 7:34:03 UTC

Have got a WU running at present

1acf__TREEJUMP_ABRELAX_TJTOP3_SAVE_ALL_OUT_BARCODE__2095_19_0
rosetta_beta version 568
Windows XP,
Processor: AuthenticAMD Unknown CPU Type [x86 Family 6 Model 8 Stepping 1] [fpu tsc sse 3dnow mmx]
Memory: 751.49 MB physical, 3.43 GB virtual

Same problem as mentioned above. Permanently 10 mins (exactly) to run. currently 92% complete, Progress still incrementing but \'to complete\' static at 10 minutes.

BOINC running as a service so no graphics, but Windows had blanked screen as screensaver kicked in overnight.

Should I abort?

--
Rod Ellery
ID: 3188 · Report as offensive    Reply Quote
Profile anders n

Send message
Joined: 16 Feb 06
Posts: 166
Credit: 131,419
RAC: 0
Message 3189 - Posted: 4 Jun 2007, 7:36:58 UTC - in response to Message 3188.  
Last modified: 4 Jun 2007, 7:37:28 UTC

Have got a WU running at present

1acf__TREEJUMP_ABRELAX_TJTOP3_SAVE_ALL_OUT_BARCODE__2095_19_0
rosetta_beta version 568
Windows XP,
Processor: AuthenticAMD Unknown CPU Type [x86 Family 6 Model 8 Stepping 1] [fpu tsc sse 3dnow mmx]
Memory: 751.49 MB physical, 3.43 GB virtual

Same problem as mentioned above. Permanently 10 mins (exactly) to run. currently 92% complete, Progress still incrementing but \'to complete\' static at 10 minutes.

BOINC running as a service so no graphics, but Windows had blanked screen as screensaver kicked in overnight.

Should I abort?


--
Rod Ellery


How long has it been running and what are your pref. run time?


ID: 3189 · Report as offensive    Reply Quote
Profile RodEllery

Send message
Joined: 20 Feb 06
Posts: 5
Credit: 8,820
RAC: 0
Message 3190 - Posted: 4 Jun 2007, 8:14:40 UTC
Last modified: 4 Jun 2007, 8:15:16 UTC

It was running at about 2 hrs with preferred at 1 hr. It seems to have completed sometime in the last 3/4 hr. Just checking result status.

Seems to have generated a successful result. ( Result 536713

Rod
ID: 3190 · Report as offensive    Reply Quote
Profile anders n

Send message
Joined: 16 Feb 06
Posts: 166
Credit: 131,419
RAC: 0
Message 3191 - Posted: 4 Jun 2007, 8:44:33 UTC - in response to Message 3188.  



Same problem as mentioned above. Permanently 10 mins (exactly) to run. currently 92% complete, Progress still incrementing but \'to complete\' static at 10 minutes.


--
Rod Ellery


When a WU takes longer than your run pref. time it looks like what you describe.

As long as the % complete increase things should be ok :)

Anders n

ps
Some of the WU-s take up to 4 H to make 1 model on my computers.

ID: 3191 · Report as offensive    Reply Quote
Profile Conan
Avatar

Send message
Joined: 16 Feb 06
Posts: 362
Credit: 1,368,421
RAC: 0
Message 3193 - Posted: 6 Jun 2007, 1:57:13 UTC

Segmentation Violation on this WU

This WU
ID: 3193 · Report as offensive    Reply Quote
Profile feet1st

Send message
Joined: 7 Mar 06
Posts: 313
Credit: 113,747
RAC: 0
Message 3194 - Posted: 12 Jun 2007, 18:09:32 UTC

I\'m 8.5hrs in to this symm fold dock relax task and still have not completed the second model. Seems significantly higher then the 1hr/model mentioned previously.
ID: 3194 · Report as offensive    Reply Quote
Rhiju
Volunteer moderator
Project developer
Project scientist

Send message
Joined: 14 Feb 06
Posts: 161
Credit: 3,725
RAC: 0
Message 3195 - Posted: 12 Jun 2007, 20:07:50 UTC - in response to Message 3194.  

Hi: Yea, about half the workunits failed on all the platforms. I\'m looking into this now...

I\'m 8.5hrs in to this symm fold dock relax task and still have not completed the second model. Seems significantly higher then the 1hr/model mentioned previously.


ID: 3195 · Report as offensive    Reply Quote
HTH

Send message
Joined: 6 Mar 06
Posts: 9
Credit: 10,226
RAC: 0
Message 3196 - Posted: 13 Jun 2007, 6:57:09 UTC

A compute error: 547575.
ID: 3196 · Report as offensive    Reply Quote
Conrad Poohs
Avatar

Send message
Joined: 29 Aug 06
Posts: 9
Credit: 1,955
RAC: 0
Message 3197 - Posted: 13 Jun 2007, 8:40:49 UTC

This WU failed. I had a Blue Screen of Death at this point. Cannot determine if the WU caused the computer to crash or the computer crashing caused the WU to fail.
ID: 3197 · Report as offensive    Reply Quote
Profile feet1st

Send message
Joined: 7 Mar 06
Posts: 313
Credit: 113,747
RAC: 0
Message 3198 - Posted: 13 Jun 2007, 14:07:07 UTC - in response to Message 3195.  

Hi: Yea, about half the workunits failed on all the platforms. I\'m looking into this now...

I\'m 8.5hrs in to this symm fold dock relax task and still have not completed the second model. Seems significantly higher then the 1hr/model mentioned previously.



Looks like mine completed normally, but took just shy of 20hrs to complete 4 models.
ID: 3198 · Report as offensive    Reply Quote
Odysseus

Send message
Joined: 4 May 07
Posts: 23
Credit: 16,331
RAC: 0
Message 3199 - Posted: 14 Jun 2007, 8:52:44 UTC

Another compute error from my Mac G4/733: 2oo2A_BOINC_SYMM_FOLD_AND_DOCK_RELAX-2oo2A-dimer__2117_156, exit code 1 (0x1).
ID: 3199 · Report as offensive    Reply Quote
Conrad Poohs
Avatar

Send message
Joined: 29 Aug 06
Posts: 9
Credit: 1,955
RAC: 0
Message 3200 - Posted: 14 Jun 2007, 15:42:18 UTC

This WU failed after 4 seconds and apparently tried to access the internet (according to ZoneAlarm).
ID: 3200 · Report as offensive    Reply Quote
Profile feet1st

Send message
Joined: 7 Mar 06
Posts: 313
Credit: 113,747
RAC: 0
Message 3201 - Posted: 15 Jun 2007, 2:39:11 UTC

Yes, the failures do attempt to connect directly back to the project to report additional traces. And unfortunately with ZA, each version of Ralph AND Rosetta must be enabled. Please enable the current v5.68 by clicking the program control, and then the add button and selecting the .exe from your BOINC/projects folder

On Windows, the default path would be:
/Program Files/BOINC/Ralph.bakerlab.org/rosetta_beta_5.68_windows_intelx86
ID: 3201 · Report as offensive    Reply Quote
Previous · 1 · 2 · 3 · 4 · Next

Message boards : RALPH@home bug list : Bug reports for 5.66-5.68



©2019 University of Washington
http://www.bakerlab.org