Posts by Sysadm@Nbg

1) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 5883)
Posted 2 Sep 2015 by Profile Sysadm@Nbg
Post:
For the 3.62 update, I reverted the windows application back to the 32bit non-sse build, and also reverted the linux application to the 32bit build (for the 64bit apps). There was a significant fraction of errors which prompted the change. We will do another update soon related to the "Option matching -relax:cyclic_peptide not found in command line top-level context" errors.


on Linux-64 got some

ERROR: Option matching -abinitio:cyclic_peptide not found in command line top-level context

where the error string is a little bit different to yours
eg this workunit
2) Message boards : RALPH@home bug list : minirosetta beta 3.50-3.52 apps (Message 5825)
Posted 5 Mar 2015 by Profile Sysadm@Nbg
Post:
Validate error for all tasks returned today.

It looks like being on the server side, units crunch ok.

confirmed --> e.g. http://ralph.bakerlab.org/workunit.php?wuid=2963714
3) Message boards : RALPH@home bug list : Minirosetta beta 3.46 (Message 5713)
Posted 23 Apr 2014 by Profile Sysadm@Nbg
Post:
All errors before are with Window7 (32 and 54 bits).
Now errors also with Ubuntu 64 bit.
2881459

Unpacking data: ../../projects/ralph.bakerlab.org/Ebola_helix_41limit_750_800.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 14400
Option constraint_generators not found.

ERROR: false
ERROR:: Exit from: src/utility/tag/Tag.hh line: 96
SIGSEGV: segmentation violation
Stack trace (8 frames):
[0xb2aef87]
[0xf770b400]
[0x9aebb07]
[0x9b4f815]
[0x9b4d045]
[0x8054950]
[0xb33f328]
[0x8048131]

Exiting...

confirmed with this host running (Ubuntu)Linux 64-bit
Option constraint_generators not found.

ERROR: false
ERROR:: Exit from: src/utility/tag/Tag.hh line: 96
# cpu_run_time_pref: 21600
SIGSEGV: segmentation violation
Stack trace (9 frames):
[0xb2aef87]
[0xf77fe400]
[0x99704f6]
[0x9aebb07]
[0x9b4f815]
[0x9b4d045]
[0x8054950]
[0xb33f328]
[0x8048131]

Exiting...

4) Message boards : RALPH@home bug list : Minirosetta beta 3.45 (Message 5631)
Posted 6 Feb 2013 by Profile Sysadm@Nbg
Post:
Ubuntu 12.04 LTS 64-bit host

Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 21600

ERROR: seqpos <= size()
ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


example: click
5) Message boards : Number crunching : Can't report work, Server Error : Can't attach shared memory (Message 5396)
Posted 25 Oct 2011 by Profile Sysadm@Nbg
Post:
Again :(
11417 ralph@home 25-10-2011 20:00 Sending scheduler request: To report completed tasks.
11418 ralph@home 25-10-2011 20:00 Reporting <and so on>
11419 ralph@home 25-10-2011 20:00 Scheduler request completed: got 0 new tasks
11420 ralph@home 25-10-2011 20:00 Server error: can't attach shared memory

may you have a look ...
6) Message boards : RALPH@home bug list : Minirosetta 3.05 (Message 5337)
Posted 16 Jun 2011 by Profile Sysadm@Nbg
Post:
this WU
ERROR: Illegal value specified for option -run:protocol : nonlocal_abinitio
7) Message boards : RALPH@home bug list : Minirosetta Beta 3.06 (Message 5282)
Posted 4 May 2011 by Profile Sysadm@Nbg
Post:
2028060

ERROR: Cannot open PDB file "1xngA.pdb"
ERROR:: Exit from: ..\..\..\src\core\import_pose\import_pose.cc line: 199
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

Invalid


I have the same error on 2 Windows work units

this one
and this one

...

All errors were on my Windows machines. Linux are all OK.

Conan


Got the same error on a Linux 64bit machine >>klick<<






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