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Posts by coturnix
1)
Message boards
:
RALPH@home bug list
:
minirosetta 2.12
(
Message 5156
)
Posted 6 Jun 2010 by
coturnix
Post:
ERROR: ERROR: Residue not supported by Placement coordinate constraint machinery
ERROR:: Exit from: src/protocols/ProteinInterfaceDesign/movers/PlaceUtils.cc line: 281
MDMX_3jzp_2p57_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2nr7_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2j6a_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2ihd_ProteinInterfaceDesign_4Jun2010_14813_2_0
2)
Message boards
:
RALPH@home bug list
:
minirosetta 2.12
(
Message 5137
)
Posted 14 May 2010 by
coturnix
Post:
Segmentation fault for both tasks:
PID_benchmark_col9_1sq2.pdb.gz_native_11May2010_ProteinInterfaceDesign_14744_5
3)
Message boards
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RALPH@home bug list
:
minirosetta 2.10
(
Message 5114
)
Posted 7 Apr 2010 by
coturnix
Post:
Lots of ha_notyr29Jan2010_3gbn_****_ProteinInterfaceDesign_6Apr2010_14587_1_0 work units fail with a segmentation violation on x86_64 Linux, e.g.
http://ralph.bakerlab.org/result.php?resultid=1782249
4)
Message boards
:
RALPH@home bug list
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minirosetta 2.05
(
Message 5097
)
Posted 21 Mar 2010 by
coturnix
Post:
Quite a few placestub_alt_denovo_1zvy_****_ProteinInterfaceDesign_19Mar2010_14558_*** work units report
ERROR: Value of inactive option accessed: -holes:dalphaball
(e.g.
placestub_alt_denovo_1zvy_2amh_ProteinInterfaceDesign_19Mar2010_14558_2
)
5)
Message boards
:
RALPH@home bug list
:
minirosetta 2.05
(
Message 5070
)
Posted 11 Feb 2010 by
coturnix
Post:
Lots of Compute Errors -- SIGSEGV (Linux) / SIGBUS (Mac) -- for example
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.1.0.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.4.1.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.3.4.pdb.pdb.JOB_14301_1
and many more.
6)
Message boards
:
RALPH@home bug list
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minirosetta 2.05
(
Message 5063
)
Posted 5 Feb 2010 by
coturnix
Post:
tyrsim_3gbn_2qsb_Protein_interface_design_01Feb2010_14280_2
(Validate Error for task
1735683
, second task succeeded)
tyrsim_3gbn_2qsv_Protein_interface_design_01Feb2010_14280_2
(Validate Error for task
1735685
, second task succeeded)
tyrsim_3gbn_2qvk_Protein_interface_design_01Feb2010_14280_2
(Validate Error for task
1735699
, second task succeeded)
dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_4
(Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_7
(Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_4
(Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14286_1
(Validate Error for both tasks)
1fxaA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7
(Validate Error for task
1737477
, second task succeeded)
1hz6A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7
(Validate Error for task
1737482
, second task succeeded)
7)
Message boards
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RALPH@home bug list
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minirosetta 2.03
(
Message 5037
)
Posted 9 Jan 2010 by
coturnix
Post:
Task
1707216
(
homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000222_090.pdb.JOB_13800_1
)
Task
1707217
(
homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000272_00016.pdb.JOB_13800_1
)
Task
1707218
(
homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000781_045.pdb.JOB_13800_1
)
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FNAME: native.pdb
FNAME: native.pdb
ERROR: [ERROR] Unable to open constraints file: /work/tex/projects/cm/benchmark/cross_filt/t317_/t317_.aln_list_mike_chosen_bestaln.alns.combined.csts
ERROR:: Exit from: ....srccorescoringconstraintsConstraintIO.cc line: 332
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
8)
Message boards
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RALPH@home bug list
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minirosetta 2.03
(
Message 5036
)
Posted 9 Jan 2010 by
coturnix
Post:
Validate errors:
ha_notyr_3gbn_2img_6Jan2010_13734_2
ha_notyr_3gbn_2fu2_6Jan2010_13734_1
9)
Message boards
:
RALPH@home bug list
:
minirosetta 2.03
(
Message 5035
)
Posted 9 Jan 2010 by
coturnix
Post:
Task:
1703705
Workunit:
ha_notyr_3gbn_2z84_6Jan2010_13734_1
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
SIGSEGV: segmentation violation
Crashed executable name: minirosetta_2.03_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.8 build 9L30
Thu Jan 7 06:48:34 2010
Same workunit segfaults on Windows.
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