Posts by coturnix

1) Message boards : RALPH@home bug list : minirosetta 2.12 (Message 5156)
Posted 6 Jun 2010 by coturnix
Post:
ERROR: ERROR: Residue not supported by Placement coordinate constraint machinery
ERROR:: Exit from: src/protocols/ProteinInterfaceDesign/movers/PlaceUtils.cc line: 281

MDMX_3jzp_2p57_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2nr7_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2j6a_ProteinInterfaceDesign_4Jun2010_14813_2_0
MDMX_3jzp_2ihd_ProteinInterfaceDesign_4Jun2010_14813_2_0
2) Message boards : RALPH@home bug list : minirosetta 2.12 (Message 5137)
Posted 14 May 2010 by coturnix
Post:
Segmentation fault for both tasks: PID_benchmark_col9_1sq2.pdb.gz_native_11May2010_ProteinInterfaceDesign_14744_5
3) Message boards : RALPH@home bug list : minirosetta 2.10 (Message 5114)
Posted 7 Apr 2010 by coturnix
Post:
Lots of ha_notyr29Jan2010_3gbn_****_ProteinInterfaceDesign_6Apr2010_14587_1_0 work units fail with a segmentation violation on x86_64 Linux, e.g. http://ralph.bakerlab.org/result.php?resultid=1782249
4) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5097)
Posted 21 Mar 2010 by coturnix
Post:
Quite a few placestub_alt_denovo_1zvy_****_ProteinInterfaceDesign_19Mar2010_14558_*** work units report

ERROR: Value of inactive option accessed: -holes:dalphaball
(e.g. placestub_alt_denovo_1zvy_2amh_ProteinInterfaceDesign_19Mar2010_14558_2)
5) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5070)
Posted 11 Feb 2010 by coturnix
Post:
Lots of Compute Errors -- SIGSEGV (Linux) / SIGBUS (Mac) -- for example

test_run1.1ttz.1ttz.IGNORE_THE_REST.c.1.0.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.4.1.pdb.pdb.JOB_14301_1
test_run1.1ttz.1ttz.IGNORE_THE_REST.c.3.4.pdb.pdb.JOB_14301_1

and many more.
6) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5063)
Posted 5 Feb 2010 by coturnix
Post:
tyrsim_3gbn_2qsb_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735683, second task succeeded)
tyrsim_3gbn_2qsv_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735685, second task succeeded)
tyrsim_3gbn_2qvk_Protein_interface_design_01Feb2010_14280_2 (Validate Error for task 1735699, second task succeeded)
dckCFA_1sq2_2ODU_ppk_0025_foldit_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_7 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_1GS9_ppk_0056_0001_ProteinInterfaceDesign_3Feb2010_14288_4 (Compute Error for both tasks, file_xfer_error)
dckCFA_1sq2_3EGN_ppk_0002_foldit_ProteinInterfaceDesign_3Feb2010_14286_1 (Validate Error for both tasks)
1fxaA_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737477, second task succeeded)
1hz6A_boinc_70pct_loopbuild_threading_cst_relax_tex_IGNORE_THE_REST_14292_7 (Validate Error for task 1737482, second task succeeded)
7) Message boards : RALPH@home bug list : minirosetta 2.03 (Message 5037)
Posted 9 Jan 2010 by coturnix
Post:
Task 1707216 (homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000222_090.pdb.JOB_13800_1)
Task 1707217 (homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000272_00016.pdb.JOB_13800_1)
Task 1707218 (homopt_cstmc_1.t317_.t317_.IGNORE_THE_REST.S_00006_0000781_045.pdb.JOB_13800_1)

BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FNAME: native.pdb
FNAME: native.pdb

ERROR: [ERROR] Unable to open constraints file: /work/tex/projects/cm/benchmark/cross_filt/t317_/t317_.aln_list_mike_chosen_bestaln.alns.combined.csts
ERROR:: Exit from: ..\..\src\core\scoring\constraints\ConstraintIO.cc line: 332
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
8) Message boards : RALPH@home bug list : minirosetta 2.03 (Message 5036)
Posted 9 Jan 2010 by coturnix
Post:
Validate errors:

ha_notyr_3gbn_2img_6Jan2010_13734_2
ha_notyr_3gbn_2fu2_6Jan2010_13734_1
9) Message boards : RALPH@home bug list : minirosetta 2.03 (Message 5035)
Posted 9 Jan 2010 by coturnix
Post:
Task: 1703705
Workunit: ha_notyr_3gbn_2z84_6Jan2010_13734_1

BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
SIGSEGV: segmentation violation

Crashed executable name: minirosetta_2.03_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.8 build 9L30
Thu Jan 7 06:48:34 2010

Same workunit segfaults on Windows.






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