Posts by Dr Who Fan

1) Message boards : Number crunching : What the ??? tasks need 6675.72 MB RAM ??? (Message 6989)
Posted 8 Apr 2021 by Dr Who Fan
Post:
Got this RED warning notice within last hour when one of my PC's was checking to see if work was available on RALPH...
ralph@home: Notice from server: Rosetta needs 6675.72 MB RAM but only 2009.65 MB is available for use
2) Message boards : RALPH@home bug list : I can no longer log in to the project via the Boinc Manager? (Message 6853)
Posted 22 Jul 2020 by Dr Who Fan
Post:
I can no longer log in to the project via the Boinc Manager is always unsuccessful, try again later ???
I've been trying for a few days just can't.

Have you try to change the password on the site?

Maybe it's related to the security certificate issue that they have not addressed yet.

https://ralph.bakerlab.org/forum_thread.php?id=853
3) Message boards : Number crunching : Download failure on Ralph/Rosetta Beta data files (Message 6842)
Posted 8 Jul 2020 by Dr Who Fan
Post:
Just got two RALPH tasks on ANDROID that I had to cancel because they will NOT DOWNLOAD.
i see that Rosetta has finally fixed the security certificate issue.
WHEN WILL YOU FIX THE CERTIFICATE HERE?
Hopefully this will be addressed sooner than later.
4) Message boards : Number crunching : Download failure on Ralph/Rosetta Beta data files (Message 6838)
Posted 21 Jun 2020 by Dr Who Fan
Post:
Guess I will have to abort the two tasks that have failed download errors since I can't get any help here.
5) Message boards : Number crunching : Download failure on Ralph/Rosetta Beta data files (Message 6837)
Posted 21 Jun 2020 by Dr Who Fan
Post:
24 hours later I still can't download the data files.
6) Message boards : Number crunching : Download failure on Ralph/Rosetta Beta data files (Message 6836)
Posted 20 Jun 2020 by Dr Who Fan
Post:
Anybody home?
12+ hours later this problem STILL exists!
Have two tasks that can not download the data files
Rosetta v4.20 arm-android-linux-gnu
Tasks:
https://ralph.bakerlab.org/result.php?resultid=5165464
https://ralph.bakerlab.org/result.php?resultid=5165422

Jun 19, 2020 20:15:40||
Internet access OK - project servers may be temporarily down.

Jun 19, 2020 20:15:38|ralph@home|
Backing off 00:15:20 on download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip

Jun 19, 2020 20:15:38|ralph@home|
Temporarily failed download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip: transient HTTP error

Jun 19, 2020 20:15:38|ralph@home|
Backing off 00:09:08 on download of bmpr2_flags

Jun 19, 2020 20:15:38|ralph@home|
Temporarily failed download of bmpr2_flags: transient HTTP error

Jun 19, 2020 20:15:38||
Project communication failed: attempting access to reference site

Jun 19, 2020 20:15:36|ralph@home|
Started download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip

Jun 19, 2020 20:15:36|ralph@home|
Started download of bmpr2_flags
7) Message boards : Number crunching : Download failure on Ralph/Rosetta Beta data files (Message 6834)
Posted 20 Jun 2020 by Dr Who Fan
Post:
Have two tasks that can not download the data files
Rosetta v4.20 arm-android-linux-gnu
Tasks:
https://ralph.bakerlab.org/result.php?resultid=5165464
https://ralph.bakerlab.org/result.php?resultid=5165422

Jun 19, 2020 20:15:40||
Internet access OK - project servers may be temporarily down.

Jun 19, 2020 20:15:38|ralph@home|
Backing off 00:15:20 on download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip

Jun 19, 2020 20:15:38|ralph@home|
Temporarily failed download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip: transient HTTP error

Jun 19, 2020 20:15:38|ralph@home|
Backing off 00:09:08 on download of bmpr2_flags

Jun 19, 2020 20:15:38|ralph@home|
Temporarily failed download of bmpr2_flags: transient HTTP error

Jun 19, 2020 20:15:38||
Project communication failed: attempting access to reference site

Jun 19, 2020 20:15:36|ralph@home|
Started download of bmpr2_att1_0_SAVE_ALL_OUT_IGNORE_THE_REST_7mg5aq2s.zip

Jun 19, 2020 20:15:36|ralph@home|
Started download of bmpr2_flags
8) Message boards : RALPH@home bug list : Rosetta 4.12+ (Message 6830)
Posted 28 May 2020 by Dr Who Fan
Post:
Failed for BOTH me and the wingman
Task 5155194
Outcome Computation error
Client state Compute error
Exit status 0 (0x00000000)


Stderr output
<core_client_version>7.16.3</core_client_version>
<![CDATA[
<stderr_txt>
command: projects/ralph.bakerlab.org/rosetta_4.20_windows_x86_64.exe @jml20200526_358_A.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 5000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3960217
Using database: database_357d5d93529_n_methylminirosetta_database
======================================================
DONE :: 66 starting structures 28483.3 cpu seconds
This process generated 66 decoys from 66 attempts
======================================================
BOINC :: WS_max 1.09564e+09
15:04:23 (4612): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>jml20200526_358_A_54_34_1_r1983490202_0</file_name>
<error_code>-240 (stat() failed)</error_code>
</file_xfer_error>

</message>
]]>
9) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6615)
Posted 3 Oct 2019 by Dr Who Fan
Post:
SAME HERE "finish file present too long" message.
Task 4918499

Also see my topic on the BOINC ,message boards "Suddenly BOINC Android thinks my battery is too low".

This leads me to suspect the latest RALPH program is ignoring the BOINC RAM & storage settings.

I have disabled work request from this project on Android. When or if things are fixed here at RALPH I might consider letting it have access to my Android device. BOINC is supposed to play nice with our device(s) but when it becomes a P.I.T.A. and causes major problems the offending project(s) no longer get my resources.
10) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6507)
Posted 25 Mar 2018 by Dr Who Fan
Post:
Same here.

Win XP 32 bit. Host ID 32648

11 tasks, 11 failures with Exit status -185 (0xFFFFFF47) ERR_RESULT_START

Application version	Rosetta v4.07 
windows_intelx86

Stderr output
<core_client_version>7.9.2</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>
11) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6493)
Posted 20 Jan 2018 by Dr Who Fan
Post:
SAME HERE:
Application version	Rosetta Mini v3.78 
windows_intelx86

TASK 4193784
======================================================
DONE ::     1 starting structures  25656.8 cpu seconds
This process generated      2 decoys from       2 attempts
======================================================
BOINC :: WS_max 4.0303e+008

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>84897_SOL_jumping_all_pairings_SAVE_ALL_OUT_20700_10_1_r1828484885_0</file_name>
  <error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>
]]>
12) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6490)
Posted 17 Jan 2018 by Dr Who Fan
Post:
Same error on 4 tasks:
4191210
4191171
4189917
4189960

ERROR: Warning: can't open file t000_.fasta!
ERROR:: Exit from: ......srccoresequenceutil.cc line: 148
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
13) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6222)
Posted 3 Nov 2017 by Dr Who Fan
Post:
Workunit 3680728 FAILED immediately upon starting for BOTH ME & WING PERSON.

Task# 4172557
Exit status -185 (0xffffffffffffff47)

application version 4.05

Name: rb_05_04_73708_117593__t000__ab_robetta_IGNORE_THE_REST_20692_26445_1

stderr out	
<core_client_version>7.8.3</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>

14) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6092)
Posted 7 Nov 2016 by Dr Who Fan
Post:
Minirosetta 3.73 Task ran about 8 seconds before crashing:
Name: NHE1_14-423_symm_hyb_cst_01_t000__krypton_SAVE_ALL_OUT_03_09_20559_416_1

ERROR: [ERROR] Error opening symmetry file '4czb.symm'
ERROR:: Exit from: ......srccoreconformationsymmetrySymmData.cc line: 392
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
15) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6022)
Posted 27 Jan 2016 by Dr Who Fan
Post:
Ver 3.71 FAILED for both of us who ran this task:

Task ID 3722270

Name gaurav_design13_SAVE_ALL_OUT_20284_27_1
======================================================
DONE ::     2 starting structures  28399.3 cpu seconds
This process generated     56 decoys from      56 attempts
======================================================
BOINC :: WS_max 2.1257e+008

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>gaurav_design13_SAVE_ALL_OUT_20284_27_1_0</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>
Validate state	Invalid
Claimed credit	93.8624553758775
Granted credit	0
application version	3.71
16) Message boards : RALPH@home bug list : Mini Rosetta Beta Version 356 (Android) all failing (Message 5797)
Posted 6 Sep 2014 by Dr Who Fan
Post:
All tasks are failing on my Android Tablet and do not show correct CPU/RUN times here.

Tasks are running about 7 to 7 1/2, some 8+ hours before failing and showing only a FRACTION of the ACTUAL RUN TIMES.

One example > Task # 3306997

From the message log on the device:
    06-09-2014 10:58 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:01 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:05 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:09 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:12 Computation for task relax_2oml.2_ralph_test_bbonly_20191_25_1 finished
    06-09-2014 11:12 Output file relax_2oml.2_ralph_test_bbonly_20191_25_1_0 for task relax_2oml.2_ralph_test_bbonly_20191_25_1 absent.

17) Message boards : RALPH@home bug list : Rosetta Mini Beta 3.53 (Message 5778)
Posted 3 Aug 2014 by Dr Who Fan
Post:
I have yet to receive ANY work for my Nexus 7 Android tablet HOST# 32700 since I attached it on 13 Jun 2014 13:56:02 UTC.
I posted about this here but never received any response.
18) Message boards : RALPH@home bug list : minirosetta beta 3.50-3.52 apps (Message 5749)
Posted 19 Jul 2014 by Dr Who Fan
Post:
Unable to get work for my Nexus 7 Tablet WHY?

ralph@home 18-07-2014 20:52 Rosetta Mini is not available for your type of computer.

    CPU type ARM
    ARMv7 Processor rev 9 (v7l) @1300MHz
    Number of CPUs 4
    Operating System Android
    3.1.10-g1e42d16



19) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4120)
Posted 20 Jun 2008 by Dr Who Fan
Post:
Reporting 4 workunits all with the same error:
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179014
ERROR:: Exit from: .refold.cc line: 338

Task ID 1041144
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4373_4_0
Workunit 921753

CPU time 3106.453
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1178115
ERROR:: Exit from: .refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 8.34820561908388
Granted credit 0
application version 5.96

---------------

Task ID 1041154
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4283_5_0
Workunit 921763
CPU time 433.9688
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179014
ERROR:: Exit from: .refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 1.16623711180149
Granted credit 0
application version 5.96

---------------

Task ID 1041155
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4284_5_0
Workunit 921764

CPU time 6452.938
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179004
ERROR:: Exit from: .refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 17.3414673491599
Granted credit 0
application version 5.96

---------------

Task ID 1041643
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4372_9_0
Workunit 922252

CPU time 2584.141
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1178120
ERROR:: Exit from: .refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 7.19297851625512
Granted credit 0
application version 5.96
20) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4113)
Posted 16 Jun 2008 by Dr Who Fan
Post:
This one failed after 76.64063 seconds:

Task ID 1035762
Name FRA_t423_CASP8_1G3U_11_IGNORE_THE_RESTaggt423_11_t423__t423_7_aa1G3U_7.fasta.template_0003_4216_1_0
Workunit 916914

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 1183334
ERROR:: Exit from: .loop_relax.cc line: 1745

</stderr_txt>

]]>


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