Posts by Dr Who Fan

1) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6507)
Posted 25 Mar 2018 by Dr Who Fan
Post:
Same here.

Win XP 32 bit. Host ID 32648

11 tasks, 11 failures with Exit status -185 (0xFFFFFF47) ERR_RESULT_START

Application version	Rosetta v4.07 
windows_intelx86

Stderr output
<core_client_version>7.9.2</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>
2) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6493)
Posted 20 Jan 2018 by Dr Who Fan
Post:
SAME HERE:
Application version	Rosetta Mini v3.78 
windows_intelx86

TASK 4193784
======================================================
DONE ::     1 starting structures  25656.8 cpu seconds
This process generated      2 decoys from       2 attempts
======================================================
BOINC :: WS_max 4.0303e+008

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>84897_SOL_jumping_all_pairings_SAVE_ALL_OUT_20700_10_1_r1828484885_0</file_name>
  <error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>
]]>
3) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6490)
Posted 17 Jan 2018 by Dr Who Fan
Post:
Same error on 4 tasks:
4191210
4191171
4189917
4189960

ERROR: Warning: can't open file t000_.fasta!
ERROR:: Exit from: ..\..\..\src\core\sequence\util.cc line: 148
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
4) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6222)
Posted 3 Nov 2017 by Dr Who Fan
Post:
Workunit 3680728 FAILED immediately upon starting for BOTH ME & WING PERSON.

Task# 4172557
Exit status -185 (0xffffffffffffff47)

application version 4.05

Name: rb_05_04_73708_117593__t000__ab_robetta_IGNORE_THE_REST_20692_26445_1

stderr out	
<core_client_version>7.8.3</core_client_version>
<![CDATA[
<message>
couldn't start app: CreateProcess() failed - (unknown error)</message>
]]>

5) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6092)
Posted 7 Nov 2016 by Dr Who Fan
Post:
Minirosetta 3.73 Task ran about 8 seconds before crashing:
Name: NHE1_14-423_symm_hyb_cst_01_t000__krypton_SAVE_ALL_OUT_03_09_20559_416_1

ERROR: [ERROR] Error opening symmetry file '4czb.symm'
ERROR:: Exit from: ..\..\..\src\core\conformation\symmetry\SymmData.cc line: 392
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
6) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6022)
Posted 27 Jan 2016 by Dr Who Fan
Post:
Ver 3.71 FAILED for both of us who ran this task:

Task ID 3722270

Name gaurav_design13_SAVE_ALL_OUT_20284_27_1
======================================================
DONE ::     2 starting structures  28399.3 cpu seconds
This process generated     56 decoys from      56 attempts
======================================================
BOINC :: WS_max 2.1257e+008

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>gaurav_design13_SAVE_ALL_OUT_20284_27_1_0</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>
Validate state	Invalid
Claimed credit	93.8624553758775
Granted credit	0
application version	3.71
7) Message boards : RALPH@home bug list : Mini Rosetta Beta Version 356 (Android) all failing (Message 5797)
Posted 6 Sep 2014 by Dr Who Fan
Post:
All tasks are failing on my Android Tablet and do not show correct CPU/RUN times here.

Tasks are running about 7 to 7 1/2, some 8+ hours before failing and showing only a FRACTION of the ACTUAL RUN TIMES.

One example > Task # 3306997

From the message log on the device:
    06-09-2014 10:58 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:01 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:05 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:09 Restarting task relax_2oml.2_ralph_test_bbonly_20191_25_1 using minirosetta_beta version 356 in slot 4
    06-09-2014 11:12 Computation for task relax_2oml.2_ralph_test_bbonly_20191_25_1 finished
    06-09-2014 11:12 Output file relax_2oml.2_ralph_test_bbonly_20191_25_1_0 for task relax_2oml.2_ralph_test_bbonly_20191_25_1 absent.

8) Message boards : RALPH@home bug list : Rosetta Mini Beta 3.53 (Message 5778)
Posted 3 Aug 2014 by Dr Who Fan
Post:
I have yet to receive ANY work for my Nexus 7 Android tablet HOST# 32700 since I attached it on 13 Jun 2014 13:56:02 UTC.
I posted about this here but never received any response.
9) Message boards : RALPH@home bug list : minirosetta beta 3.50-3.52 apps (Message 5749)
Posted 19 Jul 2014 by Dr Who Fan
Post:
Unable to get work for my Nexus 7 Tablet WHY?

ralph@home 18-07-2014 20:52 Rosetta Mini is not available for your type of computer.

    CPU type ARM
    ARMv7 Processor rev 9 (v7l) @1300MHz
    Number of CPUs 4
    Operating System Android
    3.1.10-g1e42d16



10) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4120)
Posted 20 Jun 2008 by Dr Who Fan
Post:
Reporting 4 workunits all with the same error:
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179014
ERROR:: Exit from: .\\refold.cc line: 338

Task ID 1041144
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4373_4_0
Workunit 921753

CPU time 3106.453
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1178115
ERROR:: Exit from: .\\refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 8.34820561908388
Granted credit 0
application version 5.96

---------------

Task ID 1041154
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4283_5_0
Workunit 921763
CPU time 433.9688
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179014
ERROR:: Exit from: .\\refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 1.16623711180149
Granted credit 0
application version 5.96

---------------

Task ID 1041155
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4284_5_0
Workunit 921764

CPU time 6452.938
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1179004
ERROR:: Exit from: .\\refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 17.3414673491599
Granted credit 0
application version 5.96

---------------

Task ID 1041643
Name t419N_autoalign_IGNORE_THE_REST_renumbered_4372_9_0
Workunit 922252

CPU time 2584.141
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1178120
ERROR:: Exit from: .\\refold.cc line: 338


</stderr_txt>
]]>

Validate state Invalid
Claimed credit 7.19297851625512
Granted credit 0
application version 5.96
11) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4113)
Posted 16 Jun 2008 by Dr Who Fan
Post:
This one failed after 76.64063 seconds:

Task ID 1035762
Name FRA_t423_CASP8_1G3U_11_IGNORE_THE_RESTaggt423_11_t423__t423_7_aa1G3U_7.fasta.template_0003_4216_1_0
Workunit 916914

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 1183334
ERROR:: Exit from: .\\loop_relax.cc line: 1745

</stderr_txt>

]]>
12) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4085)
Posted 28 May 2008 by Dr Who Fan
Post:
This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it\'s error reporting and also crashed.

Task ID 1017033
Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1
Workunit 903210
Created 27 May 2008 4:47:19 UTC
Sent 27 May 2008 5:20:20 UTC
Received 28 May 2008 4:01:03 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status -1073741819 (0xffffffffc0000005)
Computer ID 12756
Report deadline 31 May 2008 5:20:20 UTC
CPU time 47.92188
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 22:56:12
Loaded Library : D:\\BOINC\\dbghelp.dll
Loaded Library : D:\\BOINC\\symsrv.dll
Loaded Library : D:\\BOINC\\srcsrv.dll
LoadLibraryA( D:\\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: D:\\BOINC\\slots\\1;D:\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\TEMP\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\TEMP\\symbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 004f2000 D:\\BOINC\\projects\\ralph.bakerlab.org\\minirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded)
Linked PDB Filename : C:\\cygwin\\home\\boinc\\boinc_build\\minirosetta\\minirosetta_1.26\\mini\\Visual Studio\\BoincRelease\\minirosetta_1.26_windows_intelx86.pdb

...

*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.1491838370464
Granted credit 0
application version 1.26
13) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4084)
Posted 28 May 2008 by Dr Who Fan
Post:
Task ID 1016915
Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0
Workunit 903223
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
CPU time 7347.984
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
Error writing
** THEN ANOTHER 4605 LINES OF \"Error writing\" ***
</stderr_txt>
]]>

Validate state Invalid
Claimed credit 22.8747379626083
Granted credit 0
application version 1.26
14) Message boards : RALPH@home bug list : minirosetta v1.25 bug thread (Message 4079)
Posted 27 May 2008 by Dr Who Fan
Post:
Task ID 1016748
Name casp8_manu_t396_lb0_aaT0396_1JR8A_8_0001_4056_1_0
Workunit 903099
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
CPU time 29.78125
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2
9 10000
3 9
1 3

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157
called boinc_finish


</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.0841268804223367
Granted credit 0
application version 1.25
15) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4073)
Posted 26 May 2008 by Dr Who Fan
Post:
Finally got that machine to report the 2 completed tasks. It required stopping BOINC, a DNS FLUSH/REFRESH then restarting BOINC.
16) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4064)
Posted 26 May 2008 by Dr Who Fan
Post:
Does someone needs to kick the RALPH servers?
I am still having same problems as 15 1/2 hours ago:
5/26/2008 2:36:13 AM [file_xfer] Temporarily failed upload of 2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-crystal_foldanddock__4023_593_0_0: transient upload error
,
17) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4063)
Posted 25 May 2008 by Dr Who Fan
Post:
Are the problems noted below related to this info noted on the Server Status Page: file_deleter ralph Not running

5/25/2008 11:11:14 AM Sending scheduler request: To fetch work
5/25/2008 11:11:14 AM Requesting 2902 seconds of new work
5/25/2008 11:11:20 AM [error] No start tag in scheduler reply
5/25/2008 11:11:20 AM Deferring communication for 1 min 0 sec
5/25/2008 11:11:20 AM Reason: can\'t parse scheduler reply
5/25/2008 11:12:20 AM Fetching scheduler list
5/25/2008 11:12:26 AM Deferring communication for 1 min 0 sec
5/25/2008 11:12:26 AM Reason: Couldn\'t parse scheduler list
5/25/2008 11:13:32 AM Deferring communication for 1 days 0 hr 0 min 0 sec
5/25/2008 11:13:32 AM Reason: 3 consecutive failures fetching scheduler list
18) Message boards : RALPH@home bug list : minirosetta v1.24 bug thread (Message 4058)
Posted 24 May 2008 by Dr Who Fan
Post:
Received a Validate Error:

Task ID 972187
Name t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3795_5_0
Workunit 859854

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
Report deadline 26 May 2008 6:23:57 UTC
CPU time 7143.734
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 22.2075028113735
Granted credit 0
application version 1.24
19) Message boards : RALPH@home bug list : minirosetta v1.23 bug thread (Message 4048)
Posted 21 May 2008 by Dr Who Fan
Post:
Running into similar problems I was having with the V1.22 apps. See my 3 post in the 1.22 bug list --> Msg 4043 4046 & 4047.

This v1.23 app EXITED With A 161 Error and is still \"stuck\" on my machine at 100% Complete and won\'t upload/flush from the system.
Task ID 967640
Name d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0
Workunit 856200
Created 20 May 2008 21:15:40 UTC
Sent 20 May 2008 21:26:15 UTC
Received 21 May 2008 12:15:17 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 0 (0x0)
Computer ID 12756
Report deadline 24 May 2008 21:26:15 UTC
CPU time 6437.234
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6437.17 cpu seconds
This process generated 3 decoys from 3 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>


</message>

]]>

Validate state Invalid
Claimed credit 20.0747462117394
Granted credit 0
application version 1.23
20) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4047)
Posted 21 May 2008 by Dr Who Fan
Post:
A 3rd one completed and marked as INVALID:

Task ID 964987
Name 1scjB_BOINC_ABRELAX_RESAMPLE2_IGNORE_THE_REST-S25-5-S3-7--1scjB-_3728_1_0
Workunit 855069
Created 20 May 2008 4:07:20 UTC
Sent 20 May 2008 4:51:28 UTC
Received 20 May 2008 21:01:42 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
Report deadline 24 May 2008 4:51:28 UTC
CPU time 6315.672
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6315.61 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 19.6956507339315
Granted credit 0
application version 1.22


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