Posts by Dr Who Fan

21) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4085)
Posted 28 May 2008 by Dr Who Fan
Post:
This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it's error reporting and also crashed.

Task ID 1017033
Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1
Workunit 903210
Created 27 May 2008 4:47:19 UTC
Sent 27 May 2008 5:20:20 UTC
Received 28 May 2008 4:01:03 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status -1073741819 (0xffffffffc0000005)
Computer ID 12756
Report deadline 31 May 2008 5:20:20 UTC
CPU time 47.92188
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 22:56:12
Loaded Library : D:BOINCdbghelp.dll
Loaded Library : D:BOINCsymsrv.dll
Loaded Library : D:BOINCsrcsrv.dll
LoadLibraryA( D:BOINCversion.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: D:BOINCslots1;D:BOINCprojectsralph.bakerlab.org;srv*C:TEMPsymbols*http://msdl.microsoft.com/download/symbols;srv*C:TEMPsymbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 004f2000 D:BOINCprojectsralph.bakerlab.orgminirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded)
Linked PDB Filename : C:cygwinhomeboincboinc_buildminirosettaminirosetta_1.26miniVisual StudioBoincReleaseminirosetta_1.26_windows_intelx86.pdb

...

*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.1491838370464
Granted credit 0
application version 1.26
22) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4084)
Posted 28 May 2008 by Dr Who Fan
Post:
Task ID 1016915
Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0
Workunit 903223
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
CPU time 7347.984
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
Error writing
** THEN ANOTHER 4605 LINES OF "Error writing" ***
</stderr_txt>
]]>

Validate state Invalid
Claimed credit 22.8747379626083
Granted credit 0
application version 1.26
23) Message boards : RALPH@home bug list : minirosetta v1.25 bug thread (Message 4079)
Posted 27 May 2008 by Dr Who Fan
Post:
Task ID 1016748
Name casp8_manu_t396_lb0_aaT0396_1JR8A_8_0001_4056_1_0
Workunit 903099
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
CPU time 29.78125
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2
9 10000
3 9
1 3

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ....srccoreiopdbpose_io.cc line: 157
called boinc_finish


</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.0841268804223367
Granted credit 0
application version 1.25
24) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4073)
Posted 26 May 2008 by Dr Who Fan
Post:
Finally got that machine to report the 2 completed tasks. It required stopping BOINC, a DNS FLUSH/REFRESH then restarting BOINC.
25) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4064)
Posted 26 May 2008 by Dr Who Fan
Post:
Does someone needs to kick the RALPH servers?
I am still having same problems as 15 1/2 hours ago:
5/26/2008 2:36:13 AM [file_xfer] Temporarily failed upload of 2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-crystal_foldanddock__4023_593_0_0: transient upload error
,
26) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4063)
Posted 25 May 2008 by Dr Who Fan
Post:
Are the problems noted below related to this info noted on the Server Status Page: file_deleter ralph Not running

5/25/2008 11:11:14 AM Sending scheduler request: To fetch work
5/25/2008 11:11:14 AM Requesting 2902 seconds of new work
5/25/2008 11:11:20 AM [error] No start tag in scheduler reply
5/25/2008 11:11:20 AM Deferring communication for 1 min 0 sec
5/25/2008 11:11:20 AM Reason: can't parse scheduler reply
5/25/2008 11:12:20 AM Fetching scheduler list
5/25/2008 11:12:26 AM Deferring communication for 1 min 0 sec
5/25/2008 11:12:26 AM Reason: Couldn't parse scheduler list
5/25/2008 11:13:32 AM Deferring communication for 1 days 0 hr 0 min 0 sec
5/25/2008 11:13:32 AM Reason: 3 consecutive failures fetching scheduler list
27) Message boards : RALPH@home bug list : minirosetta v1.24 bug thread (Message 4058)
Posted 24 May 2008 by Dr Who Fan
Post:
Received a Validate Error:

Task ID 972187
Name t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3795_5_0
Workunit 859854

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
Report deadline 26 May 2008 6:23:57 UTC
CPU time 7143.734
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value
sequence mismatch between pose and psipred_ss2 S vs

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 22.2075028113735
Granted credit 0
application version 1.24
28) Message boards : RALPH@home bug list : minirosetta v1.23 bug thread (Message 4048)
Posted 21 May 2008 by Dr Who Fan
Post:
Running into similar problems I was having with the V1.22 apps. See my 3 post in the 1.22 bug list --> Msg 4043 4046 & 4047.

This v1.23 app EXITED With A 161 Error and is still "stuck" on my machine at 100% Complete and won't upload/flush from the system.
Task ID 967640
Name d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0
Workunit 856200
Created 20 May 2008 21:15:40 UTC
Sent 20 May 2008 21:26:15 UTC
Received 21 May 2008 12:15:17 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 0 (0x0)
Computer ID 12756
Report deadline 24 May 2008 21:26:15 UTC
CPU time 6437.234
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6437.17 cpu seconds
This process generated 3 decoys from 3 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>


</message>

]]>

Validate state Invalid
Claimed credit 20.0747462117394
Granted credit 0
application version 1.23
29) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4047)
Posted 21 May 2008 by Dr Who Fan
Post:
A 3rd one completed and marked as INVALID:

Task ID 964987
Name 1scjB_BOINC_ABRELAX_RESAMPLE2_IGNORE_THE_REST-S25-5-S3-7--1scjB-_3728_1_0
Workunit 855069
Created 20 May 2008 4:07:20 UTC
Sent 20 May 2008 4:51:28 UTC
Received 20 May 2008 21:01:42 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
Report deadline 24 May 2008 4:51:28 UTC
CPU time 6315.672
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6315.61 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 19.6956507339315
Granted credit 0
application version 1.22
30) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4046)
Posted 21 May 2008 by Dr Who Fan
Post:
Another one that completed but is marked as INVALID:

Task ID 964149
Name d100__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-10-S3-11--d100_-_3727_1_0
Workunit 854413
Created 20 May 2008 2:55:05 UTC
Sent 20 May 2008 2:56:22 UTC
Received 20 May 2008 19:41:02 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 4500
Report deadline 24 May 2008 2:56:22 UTC
CPU time 5425.031
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 5424.2 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 15.5600062337934
Granted credit 0
application version 1.22
31) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4043)
Posted 20 May 2008 by Dr Who Fan
Post:
This workunit is still stuck on my PC but reports as INVALID. I have tried several times to upload it but it fails every time saying 'no work' to report.

Task ID 962920
Name 1opd__BOINC_ABRELAX_SAVE_ALL_OUT_IGNORE_THE_REST-S25-11-S3-3--1opd_-_3726_1_0
Workunit 853365
Created 20 May 2008 0:41:39 UTC
Sent 20 May 2008 0:42:36 UTC
Received 20 May 2008 6:01:18 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
Report deadline 24 May 2008 0:42:36 UTC
CPU time 5962.875
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 5962.83 cpu seconds
This process generated 3 decoys from 3 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 18.5954405754592
Granted credit 0
application version 1.22
32) Message boards : RALPH@home bug list : minirosetta v1.20 bug thread (Message 4025)
Posted 15 May 2008 by Dr Who Fan
Post:
Reporting my 1st error on minirosetta v1.20

Task ID 957313
Name ev_t331_A_S.1.1079_3708_2_0
Workunit 848582
CPU time 7.125
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 763

called boinc_finish

</stderr_txt>

]]>
33) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4012)
Posted 8 May 2008 by Dr Who Fan
Post:
Same failure for me and my wingman> hbonds_geom.cc line: 749

Task ID 951691
Name mtlr_test2_S.00000001.1532_3672_1_1
Workunit 844103

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749

called boinc_finish

</stderr_txt>
]]>
34) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4011)
Posted 8 May 2008 by Dr Who Fan
Post:
Same failure for me and my wingman> hbonds_geom.cc line: 749

Task ID 951690
Name mtlr_test2_S.00000001.1529_3672_1_1
Workunit 844102

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
WARNING: Override of option -out:nstruct sets a different value

ERROR: NANs occured in hbonding!
ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749

called boinc_finish

</stderr_txt>
]]>
35) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4010)
Posted 8 May 2008 by Dr Who Fan
Post:
Same failure for me and my wingman> TorsionFragment.cc

Task ID 951570
Name mtlr_test2_S.00000001.23_3671_1_1
Workunit 843969

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: Cannot open 9-mer fragment library file: 9merfile

ERROR:: Exit from: ....srcprotocolsfragsTorsionFragment.cc line: 70

called boinc_finish

</stderr_txt>
]]>
36) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4003)
Posted 7 May 2008 by Dr Who Fan
Post:
Add one more "compute error" for me and my wing man. This also failed immediately at start up on my PC:

Task ID 950663
Name fa_max_dis_9-1bq9A-test_2008-5-6_3655_3_1
Workunit 842405

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1bq9A.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>

]]>
37) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 3998)
Posted 7 May 2008 by Dr Who Fan
Post:
Rack up another "compute error" for me and my wing man. This one failed immediately at start up on my PC:

Task ID 949788
Name fa_max_dis_9-1c8cA-test_2008-5-6_3655_9_1
Workunit 842742
Outcome Client error
Client state Compute error
Exit status 1 (0x1)

stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Option matching -psipred_ss2:1c8cA.fa_max_dis_9.psipred_ss2 not found in command line top-level context

</stderr_txt>

]]>
38) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3996)
Posted 6 May 2008 by Dr Who Fan
Post:
This one seemed to run fine then suddenly exited with a Compute error.

Task ID 946642
Name 1tig__BOINC_ABRELAX_IGNORE_THE_REST-S25-17-S3-17--1tig_-_3581_8_1
Workunit 840002
Created 4 May 2008 13:42:38 UTC
Sent 4 May 2008 13:42:54 UTC
Received 6 May 2008 18:34:36 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 0 (0x0)

Computer ID 4103
Report deadline 8 May 2008 13:42:54 UTC
CPU time 6000.468
stderr out

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6000.44 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>1tig__BOINC_ABRELAX_IGNORE_THE_REST-S25-17-S3-17--1tig_-_3581_8_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>


</message>
]]>

Validate state Invalid
Claimed credit 7.85527830571945
Granted credit 0
application version 1.18
39) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3986)
Posted 4 May 2008 by Dr Who Fan
Post:
Another one seems to have completed "ok" but Valid State was "Invalid" my wing man and me:

Task ID 946587
Name 1fkb__BOINC_ABRELAX_IGNORE_THE_REST-S25-19-S3-3--1fkb_-_3578_1_1
Workunit 839221
Created 4 May 2008 6:40:34 UTC
Sent 4 May 2008 6:40:36 UTC
Received 4 May 2008 17:56:18 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

Computer ID 12756
Report deadline 8 May 2008 6:40:36 UTC
CPU time 6026.859
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 6026.7 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 18.6845466433726
Granted credit 0
application version 1.18
40) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3984)
Posted 4 May 2008 by Dr Who Fan
Post:
This one seems to have completed "ok" but Valid State was "Invalid" my wing man and me:

Task ID 945776
Name 1pgx__BOINC_ABRELAX_IGNORE_THE_REST-S25-6-S3-3--1pgx_-_3578_1_1
Workunit 839406
Created 3 May 2008 16:42:00 UTC
Sent 3 May 2008 16:42:04 UTC
Received 4 May 2008 0:43:59 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

Computer ID 4103
Report deadline 7 May 2008 16:42:04 UTC
CPU time 4251.234
stderr out

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
No heartbeat from core client for 30 sec - exiting
# cpu_run_time_pref: 7200
No heartbeat from core client for 30 sec - exiting
# cpu_run_time_pref: 7200
No heartbeat from core client for 30 sec - exiting
# cpu_run_time_pref: 7200
No heartbeat from core client for 30 sec - exiting
# cpu_run_time_pref: 7200
======================================================
DONE :: 1 starting structures 4251.01 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 5.5653369391749
Granted credit 0
application version 1.18


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