Posts by Dr Who Fan

21) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4085) Posted 28 May 2008 by Dr Who Fan Post: This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it's error reporting and also crashed. Task ID 1017033 Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1 Workunit 903210 Created 27 May 2008 4:47:19 UTC Sent 27 May 2008 5:20:20 UTC Received 28 May 2008 4:01:03 UTC Server state Over Outcome Client error Client state Compute error Exit status -1073741819 (0xffffffffc0000005) Computer ID 12756 Report deadline 31 May 2008 5:20:20 UTC CPU time 47.92188 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 6.3.2 Dump Timestamp : 05/27/08 22:56:12 Loaded Library : D:BOINCdbghelp.dll Loaded Library : D:BOINCsymsrv.dll Loaded Library : D:BOINCsrcsrv.dll LoadLibraryA( D:BOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: D:BOINCslots1;D:BOINCprojectsralph.bakerlab.org;srvC:TEMPsymbolshttp://msdl.microsoft.com/download/symbols;srvC:TEMPsymbolshttp://boinc.berkeley.edu/symstore ModLoad: 00400000 004f2000 D:BOINCprojectsralph.bakerlab.orgminirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded) Linked PDB Filename : C:cygwinhomeboincboinc_buildminirosettaminirosetta_1.26miniVisual StudioBoincReleaseminirosetta_1.26_windows_intelx86.pdb ... * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]> Validate state Invalid Claimed credit 0.1491838370464 Granted credit 0 application version 1.26
22) Message boards : RALPH@home bug list : minirosetta v1.26 bug thread (Message 4084) Posted 28 May 2008 by Dr Who Fan Post: Task ID 1016915 Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0 Workunit 903223 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 CPU time 7347.984 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 Error writing THEN ANOTHER 4605 LINES OF "Error writing" * </stderr_txt> ]]> Validate state Invalid Claimed credit 22.8747379626083 Granted credit 0 application version 1.26
23) Message boards : RALPH@home bug list : minirosetta v1.25 bug thread (Message 4079) Posted 27 May 2008 by Dr Who Fan Post: Task ID 1016748 Name casp8_manu_t396_lb0_aaT0396_1JR8A_8_0001_4056_1_0 Workunit 903099 Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) CPU time 29.78125 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> fragment reading error -- pdb, chain and seqpos mismatch position: 66; neighbor: 187; line: 2 9 10000 3 9 1 3 ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb ERROR:: Exit from: ....srccoreiopdbpose_io.cc line: 157 called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 0.0841268804223367 Granted credit 0 application version 1.25
24) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4073) Posted 26 May 2008 by Dr Who Fan Post: Finally got that machine to report the 2 completed tasks. It required stopping BOINC, a DNS FLUSH/REFRESH then restarting BOINC.
25) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4064) Posted 26 May 2008 by Dr Who Fan Post: Does someone needs to kick the RALPH servers? I am still having same problems as 15 1/2 hours ago: 5/26/2008 2:36:13 AM [file_xfer] Temporarily failed upload of 2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-crystal_foldanddock__4023_593_0_0: transient upload error ,
26) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4063) Posted 25 May 2008 by Dr Who Fan Post: Are the problems noted below related to this info noted on the Server Status Page: file_deleter ralph Not running 5/25/2008 11:11:14 AM Sending scheduler request: To fetch work 5/25/2008 11:11:14 AM Requesting 2902 seconds of new work 5/25/2008 11:11:20 AM [error] No start tag in scheduler reply 5/25/2008 11:11:20 AM Deferring communication for 1 min 0 sec 5/25/2008 11:11:20 AM Reason: can't parse scheduler reply 5/25/2008 11:12:20 AM Fetching scheduler list 5/25/2008 11:12:26 AM Deferring communication for 1 min 0 sec 5/25/2008 11:12:26 AM Reason: Couldn't parse scheduler list 5/25/2008 11:13:32 AM Deferring communication for 1 days 0 hr 0 min 0 sec 5/25/2008 11:13:32 AM Reason: 3 consecutive failures fetching scheduler list
27) Message boards : RALPH@home bug list : minirosetta v1.24 bug thread (Message 4058) Posted 24 May 2008 by Dr Who Fan Post: Received a Validate Error: Task ID 972187 Name t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_3795_5_0 Workunit 859854 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 Report deadline 26 May 2008 6:23:57 UTC CPU time 7143.734 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> WARNING: Override of option -out:nstruct sets a different value sequence mismatch between pose and psipred_ss2 S vs </stderr_txt> ]]> Validate state Invalid Claimed credit 22.2075028113735 Granted credit 0 application version 1.24
28) Message boards : RALPH@home bug list : minirosetta v1.23 bug thread (Message 4048) Posted 21 May 2008 by Dr Who Fan Post: Running into similar problems I was having with the V1.22 apps. See my 3 post in the 1.22 bug list --> Msg 4043 4046 & 4047. This v1.23 app EXITED With A 161 Error and is still "stuck" on my machine at 100% Complete and won't upload/flush from the system. Task ID 967640 Name d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0 Workunit 856200 Created 20 May 2008 21:15:40 UTC Sent 20 May 2008 21:26:15 UTC Received 21 May 2008 12:15:17 UTC Server state Over Outcome Client error Client state Compute error Exit status 0 (0x0) Computer ID 12756 Report deadline 24 May 2008 21:26:15 UTC CPU time 6437.234 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 6437.17 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>d010__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-8-S3-8--d010_-_3730_1_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]> Validate state Invalid Claimed credit 20.0747462117394 Granted credit 0 application version 1.23
29) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4047) Posted 21 May 2008 by Dr Who Fan Post: A 3rd one completed and marked as INVALID: Task ID 964987 Name 1scjB_BOINC_ABRELAX_RESAMPLE2_IGNORE_THE_REST-S25-5-S3-7--1scjB-_3728_1_0 Workunit 855069 Created 20 May 2008 4:07:20 UTC Sent 20 May 2008 4:51:28 UTC Received 20 May 2008 21:01:42 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 Report deadline 24 May 2008 4:51:28 UTC CPU time 6315.672 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 6315.61 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 19.6956507339315 Granted credit 0 application version 1.22
30) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4046) Posted 21 May 2008 by Dr Who Fan Post: Another one that completed but is marked as INVALID: Task ID 964149 Name d100__BOINC_ABRELAX_t405_IGNORE_THE_REST-S25-10-S3-11--d100_-_3727_1_0 Workunit 854413 Created 20 May 2008 2:55:05 UTC Sent 20 May 2008 2:56:22 UTC Received 20 May 2008 19:41:02 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 4500 Report deadline 24 May 2008 2:56:22 UTC CPU time 5425.031 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 5424.2 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 15.5600062337934 Granted credit 0 application version 1.22
31) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4043) Posted 20 May 2008 by Dr Who Fan Post: This workunit is still stuck on my PC but reports as INVALID. I have tried several times to upload it but it fails every time saying 'no work' to report. Task ID 962920 Name 1opd__BOINC_ABRELAX_SAVE_ALL_OUT_IGNORE_THE_REST-S25-11-S3-3--1opd_-_3726_1_0 Workunit 853365 Created 20 May 2008 0:41:39 UTC Sent 20 May 2008 0:42:36 UTC Received 20 May 2008 6:01:18 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 Report deadline 24 May 2008 0:42:36 UTC CPU time 5962.875 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 5962.83 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 18.5954405754592 Granted credit 0 application version 1.22
32) Message boards : RALPH@home bug list : minirosetta v1.20 bug thread (Message 4025) Posted 15 May 2008 by Dr Who Fan Post: Reporting my 1st error on minirosetta v1.20 Task ID 957313 Name ev_t331_A_S.1.1079_3708_2_0 Workunit 848582 CPU time 7.125 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> WARNING: Override of option -out:nstruct sets a different value ERROR: NANs occured in hbonding! ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 763 called boinc_finish </stderr_txt> ]]>
33) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4012) Posted 8 May 2008 by Dr Who Fan Post: Same failure for me and my wingman> hbonds_geom.cc line: 749 Task ID 951691 Name mtlr_test2_S.00000001.1532_3672_1_1 Workunit 844103 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> WARNING: Override of option -out:nstruct sets a different value ERROR: NANs occured in hbonding! ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749 called boinc_finish </stderr_txt> ]]>
34) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4011) Posted 8 May 2008 by Dr Who Fan Post: Same failure for me and my wingman> hbonds_geom.cc line: 749 Task ID 951690 Name mtlr_test2_S.00000001.1529_3672_1_1 Workunit 844102 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> WARNING: Override of option -out:nstruct sets a different value ERROR: NANs occured in hbonding! ERROR:: Exit from: ....srccorescoringhbondshbonds_geom.cc line: 749 called boinc_finish </stderr_txt> ]]>
35) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4010) Posted 8 May 2008 by Dr Who Fan Post: Same failure for me and my wingman> TorsionFragment.cc Task ID 951570 Name mtlr_test2_S.00000001.23_3671_1_1 Workunit 843969 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: Cannot open 9-mer fragment library file: 9merfile ERROR:: Exit from: ....srcprotocolsfragsTorsionFragment.cc line: 70 called boinc_finish </stderr_txt> ]]>
36) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 4003) Posted 7 May 2008 by Dr Who Fan Post: Add one more "compute error" for me and my wing man. This also failed immediately at start up on my PC: Task ID 950663 Name fa_max_dis_9-1bq9A-test_2008-5-6_3655_3_1 Workunit 842405 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: Option matching -psipred_ss2:1bq9A.fa_max_dis_9.psipred_ss2 not found in command line top-level context </stderr_txt> ]]>
37) Message boards : RALPH@home bug list : minirosetta 1.19 bug thread (Message 3998) Posted 7 May 2008 by Dr Who Fan Post: Rack up another "compute error" for me and my wing man. This one failed immediately at start up on my PC: Task ID 949788 Name fa_max_dis_9-1c8cA-test_2008-5-6_3655_9_1 Workunit 842742 Outcome Client error Client state Compute error Exit status 1 (0x1) stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: Option matching -psipred_ss2:1c8cA.fa_max_dis_9.psipred_ss2 not found in command line top-level context </stderr_txt> ]]>
38) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3996) Posted 6 May 2008 by Dr Who Fan Post: This one seemed to run fine then suddenly exited with a Compute error. Task ID 946642 Name 1tig__BOINC_ABRELAX_IGNORE_THE_REST-S25-17-S3-17--1tig_-_3581_8_1 Workunit 840002 Created 4 May 2008 13:42:38 UTC Sent 4 May 2008 13:42:54 UTC Received 6 May 2008 18:34:36 UTC Server state Over Outcome Client error Client state Compute error Exit status 0 (0x0) Computer ID 4103 Report deadline 8 May 2008 13:42:54 UTC CPU time 6000.468 stderr out <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 6000.44 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>1tig__BOINC_ABRELAX_IGNORE_THE_REST-S25-17-S3-17--1tig_-_3581_8_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]> Validate state Invalid Claimed credit 7.85527830571945 Granted credit 0 application version 1.18
39) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3986) Posted 4 May 2008 by Dr Who Fan Post: Another one seems to have completed "ok" but Valid State was "Invalid" my wing man and me: Task ID 946587 Name 1fkb__BOINC_ABRELAX_IGNORE_THE_REST-S25-19-S3-3--1fkb_-_3578_1_1 Workunit 839221 Created 4 May 2008 6:40:34 UTC Sent 4 May 2008 6:40:36 UTC Received 4 May 2008 17:56:18 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 Report deadline 8 May 2008 6:40:36 UTC CPU time 6026.859 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 6026.7 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 18.6845466433726 Granted credit 0 application version 1.18
40) Message boards : RALPH@home bug list : minirosetta v1.18 bug thread (Message 3984) Posted 4 May 2008 by Dr Who Fan Post: This one seems to have completed "ok" but Valid State was "Invalid" my wing man and me: Task ID 945776 Name 1pgx__BOINC_ABRELAX_IGNORE_THE_REST-S25-6-S3-3--1pgx_-_3578_1_1 Workunit 839406 Created 3 May 2008 16:42:00 UTC Sent 3 May 2008 16:42:04 UTC Received 4 May 2008 0:43:59 UTC Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 4103 Report deadline 7 May 2008 16:42:04 UTC CPU time 4251.234 stderr out <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> No heartbeat from core client for 30 sec - exiting # cpu_run_time_pref: 7200 No heartbeat from core client for 30 sec - exiting # cpu_run_time_pref: 7200 No heartbeat from core client for 30 sec - exiting # cpu_run_time_pref: 7200 No heartbeat from core client for 30 sec - exiting # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 4251.01 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid Claimed credit 5.5653369391749 Granted credit 0 application version 1.18

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