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Minirosetta 1.67
(Message 4820)
Posted 15 May 2009 by Pepo Post: an error occured in this task: Apparently the same error happened to my task lb_alnmatrix_brokerthread_hb_t328__IGNORE_THE_REST_9664_17_0 - error 1073741819 (0xffffffffc0000005), "Access Violation (0xc0000005) at address 0x0088A3C2 write attempt to address 0x00000000", broken stack for the errored thread, BOINC Windows Runtime Debugger dump is available. Windows XP SP3, BOINC 6.6.23. |
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minirosetta v1.54 bug thread
(Message 4549)
Posted 26 Jan 2009 by Pepo Post: And it ges on... test_cc2_1_8_mammoth_mix_cen_cst_hb_t327__IGNORE_THE_REST_1YYVA_3_6860_1_2 failed (0x1): <core_client_version>6.6.2</core_client_version> Incorrect function. (0x1) - exit code 1 (0x1) BOINC:: Initializing ... ok. [2009- 1-26 12:40:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing core... Initializing options.... ok ERROR: Option matching -loop:close_loops not found in command line top-level context One peer of mine failed few days ago using mini 1.51 with other error: ERROR: unknown model name: 2FRHA_10 ERROR:: Exit from: d:boinc_buildminirosetta_windowsminisrcprotocols/abinitio/PairingStatistics.hh line: 170 called boinc_finish Peter |
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minirosetta v1.54 bug thread
(Message 4546)
Posted 26 Jan 2009 by Pepo Post: Thumbs up! I keep the fingers crossed and look forward... Peter |
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minirosetta v1.48-1.51 bug thread
(Message 4450)
Posted 19 Jan 2009 by Pepo Post: As a first preliminary report: This (long anticipated, yes i know ) new release ...... is mistakenly dated to December 12, 2008 (probably a copy of the 1.47 release). Peter |
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Server upgrade issues
(Message 4371)
Posted 1 Dec 2008 by Pepo Post: The message's header, like this one: Message 4365 - Posted 27 Nov 2008 3:54:25 UTCor Message 4239, is being sometimes clipped as much, that I can see just upper 1-2 points of the second line. This happens with IE7, but does not with SeaMonkey. It probably happens to all Modified messages, which contain more lines than the height of the user's description at its left side. Message 4251 is just in-between. On this my message, I do not see even the upper 1-2 points of the second "Last modified: 1 Dec 2008 11:49:XX UTC" header line. Peter |
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minirosetta v1.41 bug thread
(Message 4351)
Posted 21 Nov 2008 by Pepo Post: rlb_test_ralph_splitterms2_rlb_2d4f_IGNORE_THE_REST_DECOY_5551_1_1 prematurely exited after 2.2 sec runtime with code 1 (Linux 2.6.9-42.0.2.EL host, BCC 6.3.21): process exited with code 1 (0x1, -255) loopbuild_minimalist_core_control_standardloopfiles_homo_bench_looprelax_cheat_chunk_control_standard_loopfiles_t306__olange_IGNORE_THE_REST_1B70B_2_5522_1_0 exited after nearly 2 hours runtime (Win XP SP3 host, BCC 6.4.0): # cpu_run_time_pref: 7200 As someone noted few days ago in other thread, these file names (on my system, path 88 + filename 160 chars) are everything but short... Peter |
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Bug Reports for Minirosetta v1.36
(Message 4283)
Posted 16 Oct 2008 by Pepo Post: The new 'hombench_mtyka' work units seem to now be working ok, as none of my latest have gone past my 6 hour preference. I've indeed got no errored "homebench_mtyka_looprelax", but crunched just a little bit. From what I've crunched in last weeks (both ralph and rosetta), 63 x homebench_mtyka_* (came since 22.9., 6 failed - 10% failure ratio), 6 x homebench_tex_* (since 2 deays ago, and all failed): 03 x homebench_mtyka_foldcst_boinc_test* - 2 failed, 11 x homebench_mtyka_foldcst_loopbuild_boinctest* - 0 failed, 03 x homebench_mtyka_foldcst_loopbuild_test1* - 1 failed, 04 x homebench_mtyka_foldcst_loopbuild_tex_cst_* - 3 failed, 03 x homebench_mtyka_foldcst_simple_* - 0 failed, 09 x homebench_mtyka_looprelax_ccd_close_* - 0 failed, 21 x homebench_mtyka_looprelax_ccd_moves_* - 0 failed, 09 x homebench_mtyka_looprelax_test_full_* - 0 failed, 06 x homebench_tex_looprelax_tex* - 6 failed, The list is sorted alphabetically, it'd be probably better to sort them according to their time of appearance. Peter |
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Bug Reports for Minirosetta v1.36
(Message 4281)
Posted 16 Oct 2008 by Pepo Post: The new 'hombench_mtyka' work units seem to now be working ok, as none of my latest have gone past my 6 hour preference. Some do, but some do not... One more hombench_mtyka_foldcst_ task with "Maximum disk usage exceeded" and error -177, on WinXP SP3, 6.3.14 client : hombench_mtyka_foldcst_loopbuild_tex_cst_foldcst_loopbuild_tex_cst_t286__IGNORE_THE_REST_1ZITA_1_5159_1_1 exited after 5916.234 seconds with -177 (0xffffffffffffff4f) <core_client_version>6.3.14</core_client_version> According to dbg output, I'd again bet on a broken stack... Peter |
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Bug Reports for Minirosetta v1.36
(Message 4278)
Posted 15 Oct 2008 by Pepo Post: some are invalid : hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t325__IGNORE_THE_REST_1DPMA_12_5151_1_1 exited with error 1. <core_client_version>6.3.14</core_client_version> Peter |
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Bug Reports for Minirosetta v1.36
(Message 4277)
Posted 15 Oct 2008 by Pepo Post: I've noticed that my hombench_mtyka_looprelax_ccd_close_looprelax_t286__IGNORE_THE_REST_1BWP__13_5163_1_0 is still running (now at 03:02:29, 76.011%, 01:25:16 to go), although was meant to be preempted approx. 1:18 hours (or 39 CPU minutes) ago. Linux P-III, 6.2.4 client. Peter [edit]It finished correctly.[/edit] |
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Bug Reports for Minirosetta v1.36
(Message 4276)
Posted 15 Oct 2008 by Pepo Post: Two hombench_mtyka_foldcst_ tasks with "Maximum disk usage exceeded" and error -177, both on WinXP SP3, client 6.3.14: hombench_mtyka_foldcst_loopbuild_tex_cst_foldcst_loopbuild_tex_cst_t286__IGNORE_THE_REST_2APJA_3_5159_1_0 exited after 0 seconds with -177 (0xffffffffffffff4f) <core_client_version>6.3.14</core_client_version> hombench_mtyka_foldcst_loopbuild_tex_cst_foldcst_loopbuild_tex_cst_t286__IGNORE_THE_REST_1ZITA_10_5159_1_0 exited after 4972.422 seconds with -177 (0xffffffffffffff4f) <core_client_version>6.3.14</core_client_version> According to dbg output, I'd bet the running thread's got a broken stack... ---- A bunch of hombench_tex_ tasks failed with "Incorrect function. - exit code 1" after 60-800 seconds; WinXP SP3, client 6.3.14 and Linux client 6.2.4: hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t288__IGNORE_THE_REST_1T2MA_5_5137_1_1 hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t328__IGNORE_THE_REST_2CFXA_4_5154_1_0 hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t328__IGNORE_THE_REST_2CFXA_3_5154_1_0 hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t315__IGNORE_THE_REST_1KCXA_17_5148_1_0 hombench_tex_looprelax_tex_cst_oneparam_looprelax_tex_cst_t293__IGNORE_THE_REST_1VQ1A_2_5139_1_0 Peter |
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Bug Reports for Minirosetta version 1.35
(Message 4232)
Posted 30 Sep 2008 by Pepo Post: One more -1073741819 (0xffffffffc0000005) error for hombench_mtyka_foldcst_boinc_test2_foldcst_simple_t317___4997_3_2, with large BOINC Windows Runtime Debugger output. - Unhandled Exception Record - And the callstack looks weird - the accvio happened at the same address as in the Path7's case, but the call stacks are definitely different. Peter |
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Bug Reports for Minirosetta version 1.34
(Message 4231)
Posted 30 Sep 2008 by Pepo Post: I recieved a similar error message, on this WU Me too: <core_client_version>6.2.4</core_client_version> WARNING: Override of option -out:file:silent sets a different value WARNING: Override of option -out:file:silent sets a different value # cpu_run_time_pref: 14400 ====================================================== DONE :: 1 starting structures 16363.7 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish <file_xfer_error> <file_name>hombench_mtyka_looprelax_test_full_2_looprelax_t374__IGNORE_THE_REST_2FE7A_5_4954_1_2_0</file_name> <error_code>-161</error_code> </file_xfer_error> Peter |
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Bug Reports for Rosetta version 5.98
(Message 4230)
Posted 30 Sep 2008 by Pepo Post: Had the same error: Me too: t042_1_NMRREF_1_t015_1_S_00001_0000163IGNORE_THE_REST_040000_5065_48_0. Peter |
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Bug Reports for Minirosetta version 1.34
(Message 4203)
Posted 17 Sep 2008 by Pepo Post: hombench_mtyka_ralph_test1_foldcst_simple_t303___4839_2_0 prematurely exited, after 200 sec runtime (Windows XP host, own modified BCC 6.3.8): Incorrect function. (0x1) - exit code 1 (0x1) Peter |
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Bug Reports for Minirosetta version 1.34
(Message 4200)
Posted 11 Sep 2008 by Pepo Post: Similarly like mentioned in the Bug Reports for Minirosetta version 1.33 thread, my task fa_dis7-t313_-2008-9-4_4786_8_1 prematurely exited, after 5 sec runtime (Linux host, stock BCC 6.2.4): <core_client_version>6.2.4</core_client_version> James Thompson mentioned that 1.34 should fix this error, apparently it did not (or it was not exactly the same error). My wingman processed this WU with minirosetta 1.33 and failed with "Maximum CPU time exceeded", the result was reported just yesterday. As this WU is already older, actually from before this note "...I sent out a batch with options for minirosetta version 1.32 rather than version 1.33. The offending workunits have been removed from the queue...", I wonder whether the WU was left on the system by accident and survived the deletion. Peter |
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Bug Reports for Rosetta version 5.98
(Message 4154)
Posted 3 Jul 2008 by Pepo Post: The FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4594_10_0 exited with code 1: "ERROR:: Exit from: barcode_classes.cc line: 657" after 73.5 seconds runtime. The same happened to wingman (both are Windows). Peter |
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Bug report for Minirosetta version 1.29
(Message 4148)
Posted 25 Jun 2008 by Pepo Post: Mini 1.29 deletes old database files – old db files downloaded again after reboot. Obviously they're still being kept listed in client_state.xml... then it is not enough to just delete them. Peter |
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Bug report for Rosetta version 5.97
(Message 4144)
Posted 24 Jun 2008 by Pepo Post: t419N_autoalign_IGNORE_THE_REST_renumbered_4285_6_2 The t419N_autoalign_IGNORE_THE_REST_renumbered_4406_8_1: "Maximum disk usage exceeded". The same happened to all 3 wingmen (Mac, Linux, Vista). Peter |
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Bug report for Rosetta version 5.97
(Message 4139)
Posted 23 Jun 2008 by Pepo Post: There is still a possibility of getting access violations with the t405 jobs. We have to track down and fix the cause. What we are really concerned about is fixing the client stalling issue. This is a really bad problem since without any information sent back from the client, we can't determine the status of tasks and obviously a stalled client is a very bad situation. If my tasks will stall again (as some already did in the past), what files from my slot/project folders would interest you? Peter |
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