Posts by Thomas Leibold

21) Message boards : RALPH@home bug list : Bug reports for 5.56-5.59 (Message 3007) Posted 22 Apr 2007 by Thomas Leibold Post: Compute error on workunit 439946 (JK_DOCKFUNNEL_DE_NOVO_INTERFACE_1958_1): <core_client_version>5.8.15</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1) </message> <stderr_txt> Graphics are disabled due to configuration... ERROR:: Exit at: input_pdb.cc line:2998 # cpu_run_time_pref: 14400 </stderr_txt> ]]> Has failed for others as well, not just on my system.
22) Message boards : RALPH@home bug list : Bug reports for 5.56-5.59 (Message 3002) Posted 7 Apr 2007 by Thomas Leibold Post: Workunit 431258 had problems with downloading two of its parts: Fri 06 Apr 2007 04:33:04 AM PDT\|ralph@home\|[file_xfer] Started download of file 1mhk_.fasta.gz Fri 06 Apr 2007 04:33:04 AM PDT\|ralph@home\|[file_xfer] Started download of file 1mhk__1ffk.fragments.gz Fri 06 Apr 2007 04:33:06 AM PDT\|ralph@home\|Incomplete read of 66.000000 < 5KB for 1mhk_.fasta.gz - truncating Fri 06 Apr 2007 04:33:06 AM PDT\|ralph@home\|[file_xfer] Finished download of file 1mhk_.fasta.gz Fri 06 Apr 2007 04:33:06 AM PDT\|ralph@home\|[file_xfer] Throughput 623 bytes/sec Fri 06 Apr 2007 04:33:06 AM PDT\|ralph@home\|[file_xfer] Started download of file 1mhk_RNA.pdb.gz Fri 06 Apr 2007 04:33:06 AM PDT\|ralph@home\|[error] Checksum or signature error for 1mhk_.fasta.gz Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[file_xfer] Finished download of file 1mhk_RNA.pdb.gz Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[file_xfer] Throughput 3265 bytes/sec Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[file_xfer] Started download of file 1mhk__pairing.pdat.gz Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[error] MD5 check failed for 1mhk_RNA.pdb.gz Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[error] expected 43fa6b24e2ed0b12d7d949aaa6952085, got 398a6a6e30c8d9493c75a549173bcd93 Fri 06 Apr 2007 04:33:12 AM PDT\|ralph@home\|[error] Checksum or signature error for 1mhk_RNA.pdb.gz Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[file_xfer] Finished download of file 1mhk__1ffk.fragments.gz Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[file_xfer] Throughput 159807 bytes/sec Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[file_xfer] Finished download of file 1mhk__pairing.pdat.gz Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[file_xfer] Throughput 162 bytes/sec Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[error] Checksum or signature error for 1mhk__1ffk.fragments.gz Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[error] MD5 check failed for 1mhk__pairing.pdat.gz Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[error] expected 6a8599df2728416df250dcde0449ece6, got 4b92756f68af0bf0c557fdb008fb878c Fri 06 Apr 2007 04:33:13 AM PDT\|ralph@home\|[error] Checksum or signature error for 1mhk__pairing.pdat.gz <core_client_version>5.8.15</core_client_version> <![CDATA[ <message> WU download error: couldn't get input files: <file_xfer_error> <file_name>1mhk_.fasta.gz</file_name> <error_code>-200</error_code> </file_xfer_error> </message> ]]>
23) Message boards : RALPH@home bug list : Bug reports for 5.56-5.59 (Message 3001) Posted 7 Apr 2007 by Thomas Leibold Post: Had 2 WU's fail ... Got one of those too: <core_client_version>5.8.15</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1) </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 14400 # random seed: 2693814 ERROR:: Exit at: loop_relax.cc line:1688 </stderr_txt> ]]> Workunit 430740 on Linux Server.
24) Message boards : RALPH@home bug list : Bug reports for Ralph 5.52-5.54 (Message 2893) Posted 20 Mar 2007 by Thomas Leibold Post: Sorry, more work coming now! Thanks! I got one and it appears to be running fine using Ralph 5.53 with the newly installed libstdc++.so.6 which means that this was the only library that was missing. I saw the news that Ralph 5.54 fixes the library issue, but haven't gotten that version of the client yet.
25) Message boards : RALPH@home bug list : Bug reports for Ralph 5.52-5.54 (Message 2885) Posted 18 Mar 2007 by Thomas Leibold Post: <stderr_txt> rosetta_beta_5.52_i686-pc-linux-gnu: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory </stderr_txt> Looks like my computer tried to get some Ralph work done last night: at least 15 of those errors. I have installed libstdc++.so.6.0.3 (there is no official package for SuSE 9.3, but I found a third party package that happened to include this library because they needed it too). Of course now the project is out of work, so I don't know whether that would have solved the problem or if there are other shared libraries that are missing as well.
26) Message boards : RALPH@home bug list : Bug reports for Ralph 5.52-5.54 (Message 2876) Posted 17 Mar 2007 by Thomas Leibold Post: I thought the linux client was statically linked ? I'm getting an error because of a missing shared library (C++ Standard Library version 6) with the 5.52 Ralph client. <stderr_txt> rosetta_beta_5.52_i686-pc-linux-gnu: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory </stderr_txt> Workunits 408735, 408642, 408607 OS: SuSE Linux 9.3
27) Message boards : RALPH@home bug list : Bug reports for 5.49-5.51 (Message 2851) Posted 10 Mar 2007 by Thomas Leibold Post: 400678 400776 400748 On the same workunits that windows users are getting "exit code -1073741819 (0xc0000005)" and "- Unhandled Exception Record - Reason: Access Violation (0xc0000005)" I'm getting on Linux "process exited with code 131 (0x83)" and a segmentation violation: ERROR:: Unable to determine sequence length from pdb file # random seed: 2719130 SIGSEGV: segmentation violation Stack trace (13 frames): [0x8b95623] [0x8bb146c] [0xffffe420] [0x8857337] [0x861bad6] [0x8620366] [0x86222e3] [0x8973172] [0x8529c73] [0x8641c32] [0x8641cdc] [0x8c10a94] [0x8048111] Exiting...

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