<message>
Maximum memory exceeded
</message>

...
Setting up checkpointing ...
Setting up graphics native ...
ERROR:: Exit from: src/core/pack/task/ResfileReader.cc line: 987
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

1573375
lr8_rama_map_all_ss_iter08_rlbn_1bkr_IGNORE_THE_REST_NATIVE_12056_1_1

<core_client_version>6.4.5</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>

...
...
...

Native pose needed for OptionKeys::relax::constrain_relax_to_native_coords
ERROR:: Exit from: ....srcprotocolsrelaxClassicRelax.cc line: 544
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>

All recent workunits are failing quickly on Mac on file errors

1572293
1572221

(plus some others)

Sample output:

</stderr_txt>
<message>
<file_xfer_error>
<file_name>1a2p_A_30_S_ddg_predictions_0.3_1_8_local_min_test_sc_min_input_73009__12047_1_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

reached end of minirosetta::main()
======================================================
DONE ::     1 starting structures     1201 cpu seconds
This process generated      1 decoys from       1 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
  <file_name>1ten_L_61_A_ddg_predictions_0.2_10_8_local_min_test_sc_min_input_73009__12046_1_0_0</file_name>
  <error_code>-161</error_code>
</file_xfer_error>

</message>

[color=red]ERROR: Option matching -in:detect_disulfides not found in command line top-level context
[/color]

This is a 1.83 WU error

<core_client_version>6.4.7</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2009- 7-23 9:34:44:] :: BOINC:: Initializing ... ok.
[2009- 7-23 9:34:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Option matching -detect_disulphides not found in command line top-level context

See this WU

<![CDATA[
<message>
Maximum memory exceeded
</message>

Hbond tripped: [2009- 7-13  0:35: 0:]

ERROR: dis==0 in pairtermderiv!
ERROR:: Exit from: src/core/scoring/methods/PairEnergy.cc line: 334
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

ERROR: in::file::boinc_wu_zip /work/rvernon/disulfides/TARGETS/zipfiles/zipfile.1yl2.cs.set1.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 114
BOINC:: Error reading and gzipping output datafile: default.out

. . .
BOINC:: Worker startup. 
Starting watchdog...
Watchdog active.
# cpu_run_time_pref: 14400
Hbond tripped !!!
BOINC:: CPU time: 28889.1s, 14400s + 14400s[2009- 2-14 15:24: 2:] :: BOINC 
======================================================
DONE ::     2 starting structures  28889.1 cpu seconds
This process generated      3 decoys from       3 attempts
======================================================
called boinc_finish

ERROR: [ERROR] Error opening RBSeg file 'core_1X7OA_7_noloop_loops.txt'
ERROR:: Exit from: src/protocols/loops/LoopClass.cc line: 443
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

since we are on 1.56 now, should there be a new thread for that?

btw..very interesting color choice for the accepted energy line and the other line above the rmsd box. what does the blue and yellow mean and isn't there a purplish color in there as well?

Nope - its just prettyness. No extra meaning i'm afraid.

...
Starting work on structure: S_shuffle_00012 <--- F_00007_0000861_0
Fullatom mode .. 
Hbond tripped.

ERROR: dis==0 in pairtermderiv!
ERROR:: Exit from: src/core/scoring/methods/PairEnergy.cc line: 338
called boinc_finish
...

I am using Ubuntu 8.10, two core system with 2G memory, disk space 58.5 G

shmax = 33554432
shall = 2097152
shmmni = 4096

the citation's note at the top on determining the values did work on Ubuntu ... if someone has another version of Linux could you post your numbers?

sysctl -A | grep shm

is the command to run in terminal, you may get some access errors which I suppose you could supress by running it as sudo

<core_client_version>6.2.15</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>

ERROR: not able to build valid fold-tree in JumpingFoldConstraints::setup_foldtree
ERROR:: Exit from: src/protocols/abinitio/LoopJumpFoldCst.cc line: 108
called boinc_finish
# cpu_run_time_pref: 14400

</stderr_txt>
]]>