Posts by Evan

1) Message boards : Number crunching : Reached daily quota of n results (Message 5229)
Posted 11 Dec 2010 by Evan
Post:

I assume that this happens on those among your computers that display quite a few "Compute errors".
The server limits your downloads until your computers have "proven themselves" by crunching the downloaded tasks successfully. If they manage to do so, your quota will increase.


But this rule, with ralph, has no sense. Ralph, by definition, makes a lot of "compute errors"....

BOINC doesn't take this into consideration. As far as it is concerned an error is an error.
2) Message boards : RALPH@home bug list : minirosetta 2.17 (Message 5216)
Posted 6 Nov 2010 by Evan
Post:
PCS_PGR122A_v1.frag_18-51_SAVE_ALL_OUT_15041_1_0
This one failed within a few seconds

ERROR: First parameter of SVD_Solver constructor MUST be larger than the second parameter
ERROR:: Exit from: ....srcnumericSVDSVD_Solver.cc line: 202
3) Message boards : RALPH@home bug list : Minirosetta 2.11 (Message 5128)
Posted 24 Apr 2010 by Evan
Post:
I got the second run on this one - validate error both times.

symm_bench_run01_D_1g6u_IGNORE_THE_REST_14701_5_1
4) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5104)
Posted 22 Mar 2010 by Evan
Post:
This site is designed to find and rectify any problems before the work units are sent to R@H. Don't expect to have all the work units working properly. If they do then it is a bonus!
5) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5099)
Posted 21 Mar 2010 by Evan
Post:
validate error for
placestub_alt_denovo_1zvy_2r0j_ProteinInterfaceDesign_19Mar2010_14558_1_0

50% (6 out of 12) of these work units have failed with this error
6) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5089)
Posted 11 Mar 2010 by Evan
Post:
I wouldn't be surprised if there is going to be a chorus of complaints from the Rosetta users about the way these fcDE-W3.. units are hogging the hard drive. I have found that if you want to open files, access the internet etc you have to put boinc on snooze because the hard drive is otherwise occupied. The task manager shows the processors changing from 0 to 100% at very frequent intervals. In the past the indicator show a steady 100%. To top it all, the validation error is still staying at a constant 100%.
7) Message boards : RALPH@home bug list : minirosetta 2.05 (Message 5088)
Posted 11 Mar 2010 by Evan
Post:
100% validate errors (11 out of 11) using win xp and the hard drive is going continuously as it processes 4 units at a time. The work units are fcDE-W3.....
8) Message boards : RALPH@home bug list : Why so many VALIDATE ERRORS? (Message 5051)
Posted 24 Jan 2010 by Evan
Post:
Most of my recent work is going to waste because of Validate Errors.

Your work is not going to waste. The object of Ralph is to test work units. "To test" means that you have to accept some failures even if it is due to the server.

I have had 10 tyrsim_3gbn fail to validate. 3 passed on a second machine and the jury is still out on one of them.

No doubt a new batch will be sent out once the validate problem has been corrected.
9) Message boards : RALPH@home bug list : minirosetta 2.01/2.02 (Message 5012)
Posted 10 Dec 2009 by Evan
Post:
Yes, something is not right. I have sent in over a page load of successful results and can't find them on 'my tasks'. No doubt they are hiding somewhere.
10) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4976)
Posted 23 Sep 2009 by Evan
Post:
now confirmed errors for these three:
frb_0_8_mike_chosen_cst_oct09_native_frag_hb_t293__IGNORE_THE_REST....
Maximum disk usage exceeded


1620080
1620079
1620078
11) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4967)
Posted 17 Sep 2009 by Evan
Post:
Several errors, second time around:
frb_0_8_mike_chosen_cst_oct09_hb_t293__IGNORE_THE_REST_1WS6A_12_12196_1_1 Maximum disk usage exceeded

frb_0_8_mike_chosen_cst_oct09_hb_t290__IGNORE_THE_REST_1IHGA_5_12195_1_1

frb_0_8_mike_chosen_cst_oct09_hb_t290__IGNORE_THE_REST_1IHGA_6_12195_1_1


symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_NOCON_12190_9_1 Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205

symm_lr8_seq_score12_A_rlbn_1tit_IGNORE_THE_REST_NATIVE_12190_9_1
symm_lr8_seq_score12_A_rlbn_1wdv_IGNORE_THE_REST_NATIVE_NOCON_12190_8_1
12) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4960)
Posted 16 Sep 2009 by Evan
Post:
Its symmetry this time.
symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_12192_1



ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm'
ERROR:: Exit from: ....srccoreconformationsymmetrySymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
13) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4959)
Posted 16 Sep 2009 by Evan
Post:
symm_lr8_seq_score12_A_rlbn_1s12_IGNORE_THE_REST_NATIVE_NOCON_12190_10

Its anchors aweigh - my second failure for today - 8 seconds

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
14) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4955)
Posted 16 Sep 2009 by Evan
Post:
This one failed after about 15 seconds
1601407

ERROR: Anchor outside the subunit...
ERROR:: Exit from: ....srccoreconformationsymmetryutil.cc line: 218
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

15) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4953)
Posted 11 Sep 2009 by Evan
Post:
One checkpoint arrived at 03:47 and the work unit is now 04:08 with 83% completed - Model 0 Step 6.
The other is 04:36 with 92% completed without a checkpoint. Model 0 Step 6
16) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4952)
Posted 11 Sep 2009 by Evan
Post:
I'm in the middle of running some lr5_score12_gb_run01_rlbd_work units. The first two of them have been running about three hours and the graphics show model 0 step 3 (or 4) with about 60% complete. They still seem to be working at the present moment but the big problem is that there is no checkpoint. People will not be happy if they lose 4-5 hours work when they shut down.
17) Message boards : RALPH@home bug list : Minirosetta 1.81 (Message 4879)
Posted 15 Jul 2009 by Evan
Post:
I am slowly working my way through the frb_0_8_cl_1... work units. No problems so far but I fear the lack of checkpoints will create a few complaints. So far on the long running models I am at aound 4 hours without a checkpoint.
18) Message boards : RALPH@home bug list : Minirosetta 1.81 (Message 4873)
Posted 13 Jul 2009 by Evan
Post:
1544975
http://ralph.bakerlab.org/result.php?resultid=1544975

1544974
http://ralph.bakerlab.org/result.php?resultid=1544974

Errors with both the above. There is a 50% chance it was an operator induced error as they both occurred after I rebooted the computer.
19) Message boards : RALPH@home bug list : Minirosetta 1.62 (Message 4788)
Posted 17 Apr 2009 by Evan
Post:
I noticed that graphics are corrupted in both two currently crunching work units.


I concur with that on the 1.62. It is even worse than the 1.61. I am also running the Rosetta@home with perfect graphics so it is not my machine at fault.
20) Message boards : RALPH@home bug list : Minirosetta 1.61 (Message 4782)
Posted 16 Apr 2009 by Evan
Post:
I assume the problem for 1.59 was the graphics.


Next 20



©2020 University of Washington
http://www.bakerlab.org