Posts by Path7

1) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4944) Posted 28 Aug 2009 by Path7 Post: I'm getting Ralph workunits for 1.95 while Rosetta is at 1.97. How come? Good question. Looks like a (quick-)fix to me at Rosetta@home. Perhaps the techs would like to answer the question why Ralph is still at minirosetta 1.95? And an error: proteinG_PCS_BOINC_abrelax.1xcycles.v1_NOGZ_SAVE_ALL_OUT_12136_6_1 ERROR: ERROR: Unable to open silent_input file: 'default.out' ERROR:: Exit from: ....srccoreiosilentSilentFileData.cc line: 96 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Had the second run of this WU, the first run it had the same error. Have a nice day, Path7.
2) Message boards : RALPH@home bug list : Minirosetta 1.83-1.85 (Message 4914) Posted 6 Aug 2009 by Path7 Post: Thu 6 Aug 04:34:23 2009\|ralph@home\|Sending scheduler request: To fetch work. Requesting 3329 seconds of work, reporting 0 completed tasks Thu 6 Aug 04:34:28 2009\|ralph@home\|Scheduler request succeeded: got 0 new tasks Thu 6 Aug 04:34:28 2009\|ralph@home\|Message from server: Server error: can't attach shared memory Hello Odysseus, It's strange the servers are partly down: Server Status Page This has been mentioned in these threads: Can't report work, Server Error : Can't attach shared memory RALPH down a couple of days Still no reaction from the Team. We have to be patient.... Path7.
3) Message boards : RALPH@home bug list : minirosetta 1.90 (Message 4897) Posted 30 Jul 2009 by Path7 Post: Same error: lr10_seq_score12_ss2.5_rlbd_1ptq_IGNORE_THE_REST_DECOY_12033_3_1 ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_databasescoring/weights/dslf_weights.wts exist ERROR:: Exit from: ....srccorescoringScoreFunctionFactory.cc line: 177 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish
4) Message boards : RALPH@home bug list : Minirosetta 1.87 (Message 4896) Posted 30 Jul 2009 by Path7 Post: Similar result as posted above: Outcome: Success # cpu_run_time_pref: 7200 BOINC:: CPU time: 22073.6s, 14400s + 7200s[2009- 7-30 15:25:49:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) 2hdl_NNMAKE_DSLF_BOINC_abinitio.v1_SAVE_ALL_OUT_11974_3_1
5) Message boards : RALPH@home bug list : Minirosetta 1.74/1.75 (Message 4850) Posted 21 Jun 2009 by Path7 Post: Next 1.76 task: lr5_E_rama_map_all_ss_iter04_notsq_rlbd_2hng_SAVE_ALL_OUT_10709_81_0 ended with a validate error. After rebooting my computer, this task (re)started from model 1 â€“ according to the graphics. Have a nice day, Path7.
6) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4765) Posted 29 Mar 2009 by Path7 Post: @ Manuel Lupotto: Yes I also had 2 WU starting with: frb_1_8_ which took over 2 hours to complete a single decoy. frb_1_8_el_chosen_hb_t286__SAVE_ALL_OUT_IGNORE_THE_REST_1ESCA_11_8901_1_0 frb_1_8_bestfrag_hb_t297__SAVE_ALL_OUT_IGNORE_THE_REST_1VJGA_10_8858_1_0 Not a real problem I think, since Rosetta@home has a 3 hour default runtime. My last WU ended with an Unhandled Exception Detected: lb_save_all_out_hb_t369__SAVE_ALL_OUT_1HHSA_3_8759_1_1 I was the second one to crunch this WU, the first time it ended with the same error. Have a nice day, Path7.
7) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4694) Posted 13 Feb 2009 by Path7 Post: Hello all, Having the same kind of error as Paul D. Buck: ERROR: [ERROR] Error opening RBSeg file 'core_1B70B_12_noloop_loops.txt' ERROR:: Exit from: ....srcprotocolsloopsLoopClass.cc line: 443 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish loopbuild_chunk_cheat_3_5_hb_t306__IGNORE_THE_REST_1B70B_12_7794_1_0 Windows XP â€“ Boinc 5.10.45 This WU had the same error again when it was returned by another computer. Have a nice day, Path7.
8) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4569) Posted 27 Jan 2009 by Path7 Post: Hello all, Running Ubuntu 8.04 & BOINC 5.10.45 the next Wu's had an error after 0 seconds: ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t331__ mtyka_IGNORE_THE_REST_1RFEA_12_6251_9_1 ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t328 __mtyka_IGNORE_THE_REST_2GVKA_9_6250_9_0 ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t331 __mtyka_IGNORE_THE_REST_1RFEA_12_6251_5_0 All three: process exited with code 1 (0x1, -255) ERROR: Option matching -loop:close_loops not found in command line top-level context From BOINC (one example): di 27 jan 2009 19:00:50 CET\|ralph@home\|Computation for task ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t331__mtyka_IGNORE_THE_REST_1RFEA_12_6251_5_0 finished di 27 jan 2009 19:00:50 CET\|ralph@home\|Output file ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t331__mtyka_IGNORE_THE_REST_1RFEA_12_6251_5_0_0 for task ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t331__mtyka_IGNORE_THE_REST_1RFEA_12_6251_5_0 absent I hope this will be helpful, Path7.
9) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4528) Posted 24 Jan 2009 by Path7 Post: Hello mtyka, - Do the graphics behave properly again ? After having problems with the graphics running minrosetta 1.52, the combination of minrosetta 1.53 & minrosetta graphics 1.53 seems to work smoothly again. Thanks and a good weekend, Path7.
10) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4511) Posted 24 Jan 2009 by Path7 Post: Hello all, While crunching: lr6_D_score12_rlbn_1ynv_IGNORE_THE_REST_NATIVE_NOCON_6909_1_0 (minirosetta 1.52) I hit the â€œShow graphicâ€ button, Windows XP replied with an error message: Runtime error. Short message rapport: Hung application: minirosetta_graphics_1.40_windows_intelx86.exe, version: 0.0.0.0, hung module: hungapp, version: 0.0.0.0, hung at: 0x00000000. Retrying â€œShow graphicsâ€opened the graphics window, empty. At 16 minutes processor time the processor time stood still, CPU usage = 0 %. Stopped and started BOINC, the WU proceeded where it has stopped. Again tried to hit the â€œShow graphics buttonâ€, and the above repeated. Now the WU has started for the third time, and keeps on running. I don't dare to touch the â€œShow graphicsâ€ button again! Windows XP SP3, single core AMD Sempron 3000+ 1.8 GHz, 1.5 Gb RAM, BOINC 5.10.45. Path7.
11) Message boards : RALPH@home bug list : minirosetta v1.47 bug thread (Message 4428) Posted 18 Dec 2008 by Path7 Post: Hello all, The next WU ran for about 4 hours, when I had to reboot my PC due to an IE7-update. cc2_1_8_mammoth_mix_cen_cst_hb_t342__IGNORE_THE_REST_2G0QA_1_6636_1_0 The WU restarted from 0:00 hours runtime and finished within 4656 seconds (1.29 hours), and generated 1 decoy; valid. Also nice within my runtime preference of 7200 seconds. Why did this WU run for more than 4 hours at its first run? Have a nice day, Path7.
12) Message boards : RALPH@home bug list : minirosetta v1.46 bug thread (Message 4405) Posted 13 Dec 2008 by Path7 Post: Long running model The next WU: ccc_1_8_native_cst_homo_bench_foldcst_chunk_general_t305__mtyka_IGNORE_THE_REST_1FPRA_4_6306_1_0 ran for over 6 hours (22054.45 seconds) and generated one decoy. CPU_run_time_pref: 7200 seconds outcome: Success. Edit: Boinc setting: switch between application every 60 minutes. This WU ran its 22054.45 seconds ongoing (without switching to another application). Did it do any check pointing? Path7.
13) Message boards : RALPH@home bug list : minirosetta v1.45 bug thread (Message 4391) Posted 5 Dec 2008 by Path7 Post: this was a cancelled task. there will be a lot of them but you should be getting credit for them now. Thanks dekim, for your reaction. I didn't realize this one could be canceled, I see credit now. The next WU ran for 0.00 seconds. I suppose it was a real error (client error): 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0 <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Onjuiste functie. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR: Illegal value specified for option -run:rng : m </stderr_txt> ]]> (Onjuiste functie = incorrect function) Message from Boinc: 5-12-2008 22:18:17\|ralph@home\|Computation for task 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0 finished 5-12-2008 22:18:17\|ralph@home\|Output file 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0_0 for task 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0 absent Hope this will be helpful, Path7.
14) Message boards : RALPH@home bug list : minirosetta v1.45 bug thread (Message 4387) Posted 5 Dec 2008 by Path7 Post: Hello all, This WU, task ID 1206185: cc_1_3_nocst4_homo_bench_foldcst_chunk_general_t331__olange_IGNORE_THE_REST_1G76A_3_5889_3_0 ended with a validate error. Windows XP-home SP3, Boinc 5.10.45 Path7.
15) Message boards : RALPH@home bug list : minirosetta v1.43 bug thread (Message 4385) Posted 3 Dec 2008 by Path7 Post: Hi Path7, thanks for the report. ................ I will run this WU locally and check things out. what CPU was this WU running on ? -Oliver Hi olange/Oliver, Thanks for your reaction. The â€œolangeâ€ WU ran on a single core AMD sempron 3000+ 1.8 GHz, Ubuntu 8.04. I hope this helps, Path7.
16) Message boards : RALPH@home bug list : minirosetta v1.43 bug thread (Message 4378) Posted 3 Dec 2008 by Path7 Post: This WU: cc_0_6_nocst4_homo_bench_foldcst_chunk_general_t303__olange_IGNORE_THE_REST _2AH5A_3_5823_3_0 attracted my attention because it ran ongoing for 11250 seconds ( No other project ran in the meantime), and generated 2 decoys. Runtime preference: 2 hours (7200 seconds) Switch between application (setting): 60 minutes (3600 seconds). I wonder myself: did this WU made any checkpoint? Have a nice day, Path7.
17) Message boards : Number crunching : Enable RAC Decay please. (Message 4360) Posted 25 Nov 2008 by Path7 Post: Hello all, Can the RAC decay be activated so that we can see an accurate picture of who is doing what in regards to Participants, Computers and Teams. Don't know when it happened, but RAC decay seems to be activated (again). Thanks. Have a nice day, Path7.
18) Message boards : RALPH@home bug list : Server upgrade issues (Message 4353) Posted 21 Nov 2008 by Path7 Post: Hello all, Have just read from the home page: Server Status as of 21 Nov 2008 17:17:36 UTC [ Scheduler running ] Queued: 0 In progress: 484 Successes last 24h: 385,696 Failures last 24h: 62,533 Users : 2,967 Hosts : 9,586 Credits last 24h: 8,812,538 Total credits : 17,229,449 TeraFLOPS estimate: 88.125 Seems what exaggerated........... Have a nice day, Path7.
19) Message boards : RALPH@home bug list : minirosetta v1.41 bug thread (Message 4352) Posted 21 Nov 2008 by Path7 Post: This process generated 0 decoys from 0 attempts â€“ Outcome Success The next WU: rlb_2nd_iter_high_atr_rlb_1wgb_IGNORE_THE_REST_DECOY_5514_1_0 ended valid, however also had the message: DONE :: 1037 starting structures 9208.53 cpu seconds This process generated 0 decoys from 0 attempts # cpu_run_time_pref: 7200 Windows XP-home SP3 â€“ Boinc 5.10.45 Have a nice day, Path7.
20) Message boards : RALPH@home bug list : Bug Reports for Minirosetta v1.40 (Message 4338) Posted 7 Nov 2008 by Path7 Post: Hello all, This WU: test_cheaty_chunks1_homo_bench_foldcst_cheat_chunk_t297__olange_IGNORE_THE_REST_1VYHA_8_5282_1_1 ended with an error: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> ERROR:: Unable to open constraints file: tex_onealign_oneparam.cst </stderr_txt> The cruncher on this same WU before me ended up with the same error. Have a nice day, Path7.

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