Posts by Jipsu

1) Message boards : RALPH@home bug list : Server upgrade issues (Message 4356) Posted 23 Nov 2008 by Jipsu Post: When I'm reading a message board thread and press back button on my browser the thread I just read still shows as unread.. Not really a problem and refreshing the page solves this, but it's annoying.. :)
2) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4194) Posted 8 Sep 2008 by Jipsu Post: <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> ******************************************************************** Rosetta is going too long. Watchdog is ending the run! CPU time: 11060.8 seconds. Greater than 3X preferred time: 3600 seconds ****************************************************************** called boinc_finish ERROR: unknown atom_name: ASN ERROR:: Exit from: src/core/chemical/ResidueType.hh line: 928 called boinc_finish </stderr_txt> ]]> http://ralph.bakerlab.org/result.php?resultid=1082964 <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> ****************************************************************** Rosetta is going too long. Watchdog is ending the run! CPU time: 14322.2 seconds. Greater than 3X preferred time: 3600 seconds ******************************************************************** called boinc_finish </stderr_txt> ]]> http://ralph.bakerlab.org/result.php?resultid=1083365 Both computers are running linux btw. :)
3) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4156) Posted 3 Jul 2008 by Jipsu Post: FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0 <core_client_version>6.2.7</core_client_version> <![CDATA[ <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 86400 # random seed: 1173207 ====================================================== DONE :: 1 starting structures 75928.6 cpu seconds This process generated 5 decoys from 5 attempts 0 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> <message> <file_xfer_error> <file_name>FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]>
4) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4152) Posted 27 Jun 2008 by Jipsu Post: FRA_t449_CASP8_MANUAL_1_IGNORE_THE_RESTt449_1_ttxxxxT0449_1CHIM_0001_0001_0001_4584_6_0 <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 86400 # random seed: 1173943 ERROR:: Exit from: loop_relax.cc line: 1745 </stderr_txt> ]]> http://ralph.bakerlab.org/result.php?resultid=1048265
5) Message boards : RALPH@home bug list : Bug report for Minirosetta version 1.29 (Message 4146) Posted 25 Jun 2008 by Jipsu Post: Yes it is deleting old minirosetta_database files. This is from stderr.txt windows xp sp3. Unrecognized XML in parse_init_data_file: fraction_done_update_period Skipping: 1.000000 Skipping: /fraction_done_update_period Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20412.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20940.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev21566.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev22619.zip # cpu_run_time_pref: 86400 Ok now this is strange, rebooted my computer, which means rebooting boinc and it downloaded all the minirosetta_database files again. They will most likely get deleted again when I get a new 1.29 task, but is it supposed to do that? 6/25/2008 7:56:02 AM\|\|Starting BOINC client version 5.10.45 for windows_intelx86 6/25/2008 7:56:02 AM\|\|log flags: task, file_xfer, sched_ops 6/25/2008 7:56:02 AM\|\|Libraries: libcurl/7.18.0 OpenSSL/0.9.8e zlib/1.2.3 6/25/2008 7:56:02 AM\|\|Data directory: C:Program FilesBOINC 6/25/2008 7:56:03 AM\|\|Processor: 2 GenuineIntel Intel(R) Core(TM)2 Duo CPU T7500 @ 2.20GHz [x86 Family 6 Model 15 Stepping 10] 6/25/2008 7:56:03 AM\|\|Processor features: fpu tsc sse sse2 mmx 6/25/2008 7:56:03 AM\|\|OS: Microsoft Windows XP: Professional Edition, Service Pack 3, (05.01.2600.00) 6/25/2008 7:56:03 AM\|\|Memory: 1.97 GB physical, 3.79 GB virtual 6/25/2008 7:56:03 AM\|\|Disk: 25.00 GB total, 13.65 GB free 6/25/2008 7:56:03 AM\|\|Local time is UTC +3 hours 6/25/2008 7:56:04 AM\|rosetta@home\|URL: http://boinc.bakerlab.org/rosetta/; Computer ID: 766606; location: (none); project prefs: default 6/25/2008 7:56:04 AM\|ralph@home\|URL: http://ralph.bakerlab.org/; Computer ID: 12866; location: (none); project prefs: default 6/25/2008 7:56:04 AM\|\|General prefs: from rosetta@home (last modified 13-May-2008 21:19:57) 6/25/2008 7:56:04 AM\|\|Host location: none 6/25/2008 7:56:04 AM\|\|General prefs: using your defaults 6/25/2008 7:56:04 AM\|\|Preferences limit memory usage when active to 1510.67MB 6/25/2008 7:56:04 AM\|\|Preferences limit memory usage when idle to 1510.67MB 6/25/2008 7:56:04 AM\|\|Preferences limit disk usage to 12.50GB 6/25/2008 7:56:05 AM\|\|file projects/ralph.bakerlab.org/minirosetta_database_rev20940.zip not found 6/25/2008 7:56:05 AM\|\|file projects/ralph.bakerlab.org/minirosetta_database_rev21566.zip not found 6/25/2008 7:56:05 AM\|\|file projects/ralph.bakerlab.org/minirosetta_database_rev20412.zip not found 6/25/2008 7:56:05 AM\|\|file projects/ralph.bakerlab.org/minirosetta_database_rev22619.zip not found 6/25/2008 7:56:05 AM\|rosetta@home\|Restarting task rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0 using minirosetta version 128 6/25/2008 7:56:05 AM\|ralph@home\|Restarting task h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0 using minirosetta version 129 6/25/2008 7:56:06 AM\|ralph@home\|Started download of minirosetta_database_rev20940.zip 6/25/2008 7:56:06 AM\|ralph@home\|Started download of minirosetta_database_rev21566.zip 6/25/2008 7:56:49 AM\|ralph@home\|Finished download of minirosetta_database_rev20940.zip 6/25/2008 7:56:49 AM\|ralph@home\|Started download of minirosetta_database_rev20412.zip 6/25/2008 7:56:54 AM\|ralph@home\|Finished download of minirosetta_database_rev21566.zip 6/25/2008 7:56:54 AM\|ralph@home\|Started download of minirosetta_database_rev22619.zip 6/25/2008 7:56:56 AM\|rosetta@home\|Computation for task rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0 finished 6/25/2008 7:56:56 AM\|ralph@home\|Sending scheduler request: To fetch work. Requesting 1 seconds of work, reporting 0 completed tasks 6/25/2008 7:56:58 AM\|rosetta@home\|Started upload of rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0_0 6/25/2008 7:57:01 AM\|ralph@home\|Computation for task h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0 finished 6/25/2008 7:57:02 AM\|ralph@home\|Scheduler request succeeded: got 0 new tasks 6/25/2008 7:57:03 AM\|ralph@home\|Started upload of h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0_0 6/25/2008 7:57:07 AM\|rosetta@home\|Sending scheduler request: To fetch work. Requesting 2 seconds of work, reporting 1 completed tasks 6/25/2008 7:57:08 AM\|rosetta@home\|Finished upload of rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0_0 6/25/2008 7:57:10 AM\|ralph@home\|Finished upload of h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0_0 6/25/2008 7:57:13 AM\|rosetta@home\|Scheduler request succeeded: got 1 new tasks 6/25/2008 7:57:15 AM\|rosetta@home\|Started download of rb_06_24_11702_20999_T0468_t000_.psipred_ss2 6/25/2008 7:57:15 AM\|rosetta@home\|Started download of rb_06_24_11702_20999_T0468_t000_.fasta 6/25/2008 7:57:16 AM\|rosetta@home\|Finished download of rb_06_24_11702_20999_T0468_t000_.psipred_ss2 6/25/2008 7:57:16 AM\|rosetta@home\|Finished download of rb_06_24_11702_20999_T0468_t000_.fasta 6/25/2008 7:57:16 AM\|rosetta@home\|Started download of rb_06_24_11702_20999_T0468_aat000_03_05.200_v1_3.gz 6/25/2008 7:57:16 AM\|rosetta@home\|Started download of rb_06_24_11702_20999_T0468_aat000_05_05.200_v1_3.gz 6/25/2008 7:57:20 AM\|rosetta@home\|Finished download of rb_06_24_11702_20999_T0468_aat000_03_05.200_v1_3.gz 6/25/2008 7:57:20 AM\|rosetta@home\|Started download of rb_06_24_11702_20999_T0468_aat000_10_05.200_v1_3.gz 6/25/2008 7:57:25 AM\|rosetta@home\|Finished download of rb_06_24_11702_20999_T0468_aat000_10_05.200_v1_3.gz 6/25/2008 7:57:27 AM\|rosetta@home\|Finished download of rb_06_24_11702_20999_T0468_aat000_05_05.200_v1_3.gz 6/25/2008 7:57:28 AM\|rosetta@home\|Starting rb_06_24_11702_20999_T0468_IGNORE_THE_REST_05_10_4109_130_0 6/25/2008 7:57:28 AM\|rosetta@home\|Starting task rb_06_24_11702_20999_T0468_IGNORE_THE_REST_05_10_4109_130_0 using minirosetta version 128 6/25/2008 7:57:40 AM\|ralph@home\|Finished download of minirosetta_database_rev20412.zip 6/25/2008 7:58:12 AM\|ralph@home\|Finished download of minirosetta_database_rev22619.zip
6) Message boards : RALPH@home bug list : Bug report for Minirosetta version 1.29 (Message 4140) Posted 24 Jun 2008 by Jipsu Post: Yes it is deleting old minirosetta_database files. This is from stderr.txt windows xp sp3. Unrecognized XML in parse_init_data_file: fraction_done_update_period Skipping: 1.000000 Skipping: /fraction_done_update_period Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20412.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20940.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev21566.zip Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev22619.zip # cpu_run_time_pref: 86400
7) Message boards : RALPH@home bug list : Bug report for Rosetta version 5.97 (Message 4128) Posted 21 Jun 2008 by Jipsu Post: This stderr might be interesting, it still was a success though. http://ralph.bakerlab.org/result.php?resultid=1045195
8) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4117) Posted 20 Jun 2008 by Jipsu Post: Just pick an error you like most http://ralph.bakerlab.org/results.php?hostid=12816 Only two choices though. <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 3600 ERROR:: Unable to determine sequence length from pdb file # random seed: 1178530 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> or <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> ]]>
9) Message boards : RALPH@home bug list : minirosetta v1.27 bug thread (Message 4106) Posted 7 Jun 2008 by Jipsu Post: This is not really a bug, maybe an issue though. I would like to see changelog when you release a new version, if that is not too much to ask. Just curious. :)
10) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4074) Posted 26 May 2008 by Jipsu Post: http://ralph.bakerlab.org/result.php?resultid=983408 failed. <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1326360 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00BF0601 read attempt to address 0x0E109000 Engaging BOINC Windows Runtime Debugger...
11) Message boards : RALPH@home bug list : minirosetta v1.25 bug thread (Message 4067) Posted 26 May 2008 by Jipsu Post: This was interesting WU, completed valid, but stderr out is full of "error writing" message. http://ralph.bakerlab.org/result.php?resultid=1016222
12) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4066) Posted 26 May 2008 by Jipsu Post: Working fine here. :o
13) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4053) Posted 22 May 2008 by Jipsu Post: Don't know if it's a problem with my computer or WU, but this WU doesn't have any moving graphics, only native form is visible.
14) Message boards : RALPH@home bug list : minirosetta v1.24 bug thread (Message 4052) Posted 22 May 2008 by Jipsu Post: This must have like the longest debug message I have ever seen. Don't know if it's a problem with the task or application because my wingman is still crunching. http://ralph.bakerlab.org/result.php?resultid=970782
15) Message boards : RALPH@home bug list : minirosetta v1.23 bug thread (Message 4045) Posted 21 May 2008 by Jipsu Post: Validate Error Validate Error
16) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4037) Posted 20 May 2008 by Jipsu Post: My first windows WU failed too, validate error. http://ralph.bakerlab.org/result.php?resultid=965349
17) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4036) Posted 20 May 2008 by Jipsu Post: 8 task so far failed with the following message: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 22 (0x16, -234) </message> <stderr_txt> execv: Exec format error </stderr_txt> ]]> This is Linux-2.6.24-gentoo-r7. Tasks for the computer above
18) Message boards : RALPH@home bug list : minirosetta 1.15 bug thread (Message 3970) Posted 25 Apr 2008 by Jipsu Post: I got tow failed wu with this error message <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Felaktig funktion. (0x1) - exit code 1 (0x1) </message> <stderr_txt> ERROR:: Exit from: ....srccoreiopdbfile_data.cc line: 373 called boinc_finish </stderr_txt> ]]> Work units 936949 936953 I have some random incorrect function errors too, but they all seem to be related to WU.
19) Message boards : RALPH@home bug list : minirosetta 1.14 bug thread (Message 3950) Posted 22 Apr 2008 by Jipsu Post: Epic Fail! I have failed WUs aswell, but I don't think there is need to post them because the errors are all posted before.
20) Message boards : RALPH@home bug list : minirosetta 1.12 bug thread (Message 3910) Posted 16 Apr 2008 by Jipsu Post: Getting the same error as before so I assume the linux problem isn't fixed :\|

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