Posts by Jipsu

1) Message boards : RALPH@home bug list : Server upgrade issues (Message 4356)
Posted 23 Nov 2008 by Jipsu
Post:
When I'm reading a message board thread and press back button on my browser the thread I just read still shows as unread.. Not really a problem and refreshing the page solves this, but it's annoying.. :)
2) Message boards : RALPH@home bug list : Bug Reports for Minirosetta version 1.34 (Message 4194)
Posted 8 Sep 2008 by Jipsu
Post:
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
**********************************************************************
Rosetta is going too long. Watchdog is ending the run!
CPU time: 11060.8 seconds. Greater than 3X preferred time: 3600 seconds
**********************************************************************
called boinc_finish

ERROR: unknown atom_name: ASN
ERROR:: Exit from: src/core/chemical/ResidueType.hh line: 928
called boinc_finish

</stderr_txt>
]]>

http://ralph.bakerlab.org/result.php?resultid=1082964



<core_client_version>5.10.45</core_client_version>
<![CDATA[
<stderr_txt>
**********************************************************************
Rosetta is going too long. Watchdog is ending the run!
CPU time: 14322.2 seconds. Greater than 3X preferred time: 3600 seconds
**********************************************************************
called boinc_finish

</stderr_txt>
]]>

http://ralph.bakerlab.org/result.php?resultid=1083365

Both computers are running linux btw. :)
3) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4156)
Posted 3 Jul 2008 by Jipsu
Post:
FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0

<core_client_version>6.2.7</core_client_version>
<![CDATA[
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 86400
# random seed: 1173207
======================================================
DONE :: 1 starting structures 75928.6 cpu seconds
This process generated 5 decoys from 5 attempts
0 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>FRA_t451_CASP8_HYBRID_MANUAL_1_IGNORE_THE_RESTt451_1_axmin1_0001_4599_7_0_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>
4) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4152)
Posted 27 Jun 2008 by Jipsu
Post:
FRA_t449_CASP8_MANUAL_1_IGNORE_THE_RESTt449_1_ttxxxxT0449_1CHIM_0001_0001_0001_4584_6_0

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 86400
# random seed: 1173943
ERROR:: Exit from: loop_relax.cc line: 1745

</stderr_txt>
]]>

http://ralph.bakerlab.org/result.php?resultid=1048265
5) Message boards : RALPH@home bug list : Bug report for Minirosetta version 1.29 (Message 4146)
Posted 25 Jun 2008 by Jipsu
Post:
Yes it is deleting old minirosetta_database files. This is from stderr.txt windows xp sp3.

Unrecognized XML in parse_init_data_file: fraction_done_update_period
Skipping: 1.000000
Skipping: /fraction_done_update_period
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20412.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20940.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev21566.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev22619.zip
# cpu_run_time_pref: 86400


Ok now this is strange, rebooted my computer, which means rebooting boinc and it downloaded all the minirosetta_database files again. They will most likely get deleted again when I get a new 1.29 task, but is it supposed to do that?

6/25/2008 7:56:02 AM||Starting BOINC client version 5.10.45 for windows_intelx86
6/25/2008 7:56:02 AM||log flags: task, file_xfer, sched_ops
6/25/2008 7:56:02 AM||Libraries: libcurl/7.18.0 OpenSSL/0.9.8e zlib/1.2.3
6/25/2008 7:56:02 AM||Data directory: C:Program FilesBOINC
6/25/2008 7:56:03 AM||Processor: 2 GenuineIntel Intel(R) Core(TM)2 Duo CPU T7500 @ 2.20GHz [x86 Family 6 Model 15 Stepping 10]
6/25/2008 7:56:03 AM||Processor features: fpu tsc sse sse2 mmx
6/25/2008 7:56:03 AM||OS: Microsoft Windows XP: Professional Edition, Service Pack 3, (05.01.2600.00)
6/25/2008 7:56:03 AM||Memory: 1.97 GB physical, 3.79 GB virtual
6/25/2008 7:56:03 AM||Disk: 25.00 GB total, 13.65 GB free
6/25/2008 7:56:03 AM||Local time is UTC +3 hours
6/25/2008 7:56:04 AM|rosetta@home|URL: http://boinc.bakerlab.org/rosetta/; Computer ID: 766606; location: (none); project prefs: default
6/25/2008 7:56:04 AM|ralph@home|URL: http://ralph.bakerlab.org/; Computer ID: 12866; location: (none); project prefs: default
6/25/2008 7:56:04 AM||General prefs: from rosetta@home (last modified 13-May-2008 21:19:57)
6/25/2008 7:56:04 AM||Host location: none
6/25/2008 7:56:04 AM||General prefs: using your defaults
6/25/2008 7:56:04 AM||Preferences limit memory usage when active to 1510.67MB
6/25/2008 7:56:04 AM||Preferences limit memory usage when idle to 1510.67MB
6/25/2008 7:56:04 AM||Preferences limit disk usage to 12.50GB
6/25/2008 7:56:05 AM||file projects/ralph.bakerlab.org/minirosetta_database_rev20940.zip not found
6/25/2008 7:56:05 AM||file projects/ralph.bakerlab.org/minirosetta_database_rev21566.zip not found
6/25/2008 7:56:05 AM||file projects/ralph.bakerlab.org/minirosetta_database_rev20412.zip not found
6/25/2008 7:56:05 AM||file projects/ralph.bakerlab.org/minirosetta_database_rev22619.zip not found

6/25/2008 7:56:05 AM|rosetta@home|Restarting task rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0 using minirosetta version 128
6/25/2008 7:56:05 AM|ralph@home|Restarting task h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0 using minirosetta version 129
6/25/2008 7:56:06 AM|ralph@home|Started download of minirosetta_database_rev20940.zip
6/25/2008 7:56:06 AM|ralph@home|Started download of minirosetta_database_rev21566.zip
6/25/2008 7:56:49 AM|ralph@home|Finished download of minirosetta_database_rev20940.zip
6/25/2008 7:56:49 AM|ralph@home|Started download of minirosetta_database_rev20412.zip
6/25/2008 7:56:54 AM|ralph@home|Finished download of minirosetta_database_rev21566.zip
6/25/2008 7:56:54 AM|ralph@home|Started download of minirosetta_database_rev22619.zip

6/25/2008 7:56:56 AM|rosetta@home|Computation for task rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0 finished
6/25/2008 7:56:56 AM|ralph@home|Sending scheduler request: To fetch work. Requesting 1 seconds of work, reporting 0 completed tasks
6/25/2008 7:56:58 AM|rosetta@home|Started upload of rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0_0
6/25/2008 7:57:01 AM|ralph@home|Computation for task h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0 finished
6/25/2008 7:57:02 AM|ralph@home|Scheduler request succeeded: got 0 new tasks
6/25/2008 7:57:03 AM|ralph@home|Started upload of h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0_0
6/25/2008 7:57:07 AM|rosetta@home|Sending scheduler request: To fetch work. Requesting 2 seconds of work, reporting 1 completed tasks
6/25/2008 7:57:08 AM|rosetta@home|Finished upload of rb_06_23_11701_20993_T0467_IGNORE_THE_REST_09_16_4103_89_0_0
6/25/2008 7:57:10 AM|ralph@home|Finished upload of h001b_BOINC_CASP8_ABRELAX_RANGE_t443_IGNORE_THE_REST-S25-10-S3-7--h001b-_4561_35_0_0
6/25/2008 7:57:13 AM|rosetta@home|Scheduler request succeeded: got 1 new tasks
6/25/2008 7:57:15 AM|rosetta@home|Started download of rb_06_24_11702_20999_T0468_t000_.psipred_ss2
6/25/2008 7:57:15 AM|rosetta@home|Started download of rb_06_24_11702_20999_T0468_t000_.fasta
6/25/2008 7:57:16 AM|rosetta@home|Finished download of rb_06_24_11702_20999_T0468_t000_.psipred_ss2
6/25/2008 7:57:16 AM|rosetta@home|Finished download of rb_06_24_11702_20999_T0468_t000_.fasta
6/25/2008 7:57:16 AM|rosetta@home|Started download of rb_06_24_11702_20999_T0468_aat000_03_05.200_v1_3.gz
6/25/2008 7:57:16 AM|rosetta@home|Started download of rb_06_24_11702_20999_T0468_aat000_05_05.200_v1_3.gz
6/25/2008 7:57:20 AM|rosetta@home|Finished download of rb_06_24_11702_20999_T0468_aat000_03_05.200_v1_3.gz
6/25/2008 7:57:20 AM|rosetta@home|Started download of rb_06_24_11702_20999_T0468_aat000_10_05.200_v1_3.gz
6/25/2008 7:57:25 AM|rosetta@home|Finished download of rb_06_24_11702_20999_T0468_aat000_10_05.200_v1_3.gz
6/25/2008 7:57:27 AM|rosetta@home|Finished download of rb_06_24_11702_20999_T0468_aat000_05_05.200_v1_3.gz
6/25/2008 7:57:28 AM|rosetta@home|Starting rb_06_24_11702_20999_T0468_IGNORE_THE_REST_05_10_4109_130_0
6/25/2008 7:57:28 AM|rosetta@home|Starting task rb_06_24_11702_20999_T0468_IGNORE_THE_REST_05_10_4109_130_0 using minirosetta version 128
6/25/2008 7:57:40 AM|ralph@home|Finished download of minirosetta_database_rev20412.zip
6/25/2008 7:58:12 AM|ralph@home|Finished download of minirosetta_database_rev22619.zip

6) Message boards : RALPH@home bug list : Bug report for Minirosetta version 1.29 (Message 4140)
Posted 24 Jun 2008 by Jipsu
Post:
Yes it is deleting old minirosetta_database files. This is from stderr.txt windows xp sp3.

Unrecognized XML in parse_init_data_file: fraction_done_update_period
Skipping: 1.000000
Skipping: /fraction_done_update_period
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20412.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev20940.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev21566.zip
Removed deprecated file: C:Program FilesBOINC/projects/ralph.bakerlab.orgminirosetta_database_rev22619.zip
# cpu_run_time_pref: 86400
7) Message boards : RALPH@home bug list : Bug report for Rosetta version 5.97 (Message 4128)
Posted 21 Jun 2008 by Jipsu
Post:
This stderr might be interesting, it still was a success though.

http://ralph.bakerlab.org/result.php?resultid=1045195
8) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4117)
Posted 20 Jun 2008 by Jipsu
Post:
Just pick an error you like most http://ralph.bakerlab.org/results.php?hostid=12816

Only two choices though.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
ERROR:: Unable to determine sequence length from pdb file
# random seed: 1178530
ERROR:: Exit from: .refold.cc line: 338

</stderr_txt>
]]>

or

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Maximum disk usage exceeded
</message>
]]>
9) Message boards : RALPH@home bug list : minirosetta v1.27 bug thread (Message 4106)
Posted 7 Jun 2008 by Jipsu
Post:
This is not really a bug, maybe an issue though.

I would like to see changelog when you release a new version, if that is not too much to ask.

Just curious. :)
10) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4074)
Posted 26 May 2008 by Jipsu
Post:
http://ralph.bakerlab.org/result.php?resultid=983408 failed.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 1326360


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00BF0601 read attempt to address 0x0E109000

Engaging BOINC Windows Runtime Debugger...
11) Message boards : RALPH@home bug list : minirosetta v1.25 bug thread (Message 4067)
Posted 26 May 2008 by Jipsu
Post:
This was interesting WU, completed valid, but stderr out is full of "error writing" message.

http://ralph.bakerlab.org/result.php?resultid=1016222
12) Message boards : RALPH@home bug list : Scheduler/Server Problems? (Message 4066)
Posted 26 May 2008 by Jipsu
Post:
Working fine here. :o
13) Message boards : RALPH@home bug list : Bug reports for 5.96 (Message 4053)
Posted 22 May 2008 by Jipsu
Post:
Don't know if it's a problem with my computer or WU, but this WU doesn't have any moving graphics, only native form is visible.
14) Message boards : RALPH@home bug list : minirosetta v1.24 bug thread (Message 4052)
Posted 22 May 2008 by Jipsu
Post:
This must have like the longest debug message I have ever seen.
Don't know if it's a problem with the task or application because my wingman is still crunching.

http://ralph.bakerlab.org/result.php?resultid=970782
15) Message boards : RALPH@home bug list : minirosetta v1.23 bug thread (Message 4045)
Posted 21 May 2008 by Jipsu
Post:
Validate Error
Validate Error
16) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4037)
Posted 20 May 2008 by Jipsu
Post:
My first windows WU failed too, validate error.

http://ralph.bakerlab.org/result.php?resultid=965349
17) Message boards : RALPH@home bug list : minirosetta v1.22 bug thread (Message 4036)
Posted 20 May 2008 by Jipsu
Post:
8 task so far failed with the following message:

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
process exited with code 22 (0x16, -234)
</message>
<stderr_txt>
execv: Exec format error

</stderr_txt>
]]>


This is Linux-2.6.24-gentoo-r7.

Tasks for the computer above
18) Message boards : RALPH@home bug list : minirosetta 1.15 bug thread (Message 3970)
Posted 25 Apr 2008 by Jipsu
Post:
I got tow failed wu with this error message


<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Felaktig funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR:: Exit from: ....srccoreiopdbfile_data.cc line: 373
called boinc_finish

</stderr_txt>
]]>

Work units
936949
936953




I have some random incorrect function errors too, but they all seem to be related to WU.
19) Message boards : RALPH@home bug list : minirosetta 1.14 bug thread (Message 3950)
Posted 22 Apr 2008 by Jipsu
Post:
Epic Fail!

I have failed WUs aswell, but I don't think there is need to post them because the errors are all posted before.
20) Message boards : RALPH@home bug list : minirosetta 1.12 bug thread (Message 3910)
Posted 16 Apr 2008 by Jipsu
Post:
Getting the same error as before so I assume the linux problem isn't fixed :|


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