Posts by Maurice Goulois

1) Message boards : RALPH@home bug list : Rosetta 4.20 (Message 6921) Posted 16 Dec 2020 by Maurice Goulois Post: Hello :) problem seems to be solved :) no errors on last batch of 4.20.
2) Message boards : RALPH@home bug list : Rosetta 4.20 (Message 6919) Posted 15 Dec 2020 by Maurice Goulois Post: Hello, all wus seem to error :( <core_client_version>7.16.6</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255)</message> <stderr_txt> command: ../../projects/ralph.bakerlab.org/rosetta_4.20_x86_64-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol design.xml @flags_norn_sIaaUAESrJPM -in:file:silent 165_0_0.45_1_6_7404_0_0.35_1_W17_Y33_Q117d1ohpa__clean_0001_N22.rd1.silent_norn_sIaaUAESrJPM_SAVE_ALL_OUT_IGNORE_THE_REST_5ik1xb8p.silent -in:file:silent_struct_type binary -silent_gz -mute all -silent_read_through_errors true -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip 165_0_0.45_1_6_7404_0_0.35_1_W17_Y33_Q117d1ohpa__clean_0001_N22.rd1.silent_norn_sIaaUAESrJPM_SAVE_ALL_OUT_IGNORE_THE_REST_5ik1xb8p.zip -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 5000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3896392 Using database: database_357d5d93529_n_methyl/minirosetta_database ERROR: Cannot find file '-extra_res_fa or minirosetta_database/chemical/residue_type_sets/fa_standard/residue_types/-extra_res_fa' ERROR:: Exit from: src/core/chemical/residue_io.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out 16:06:20 (762737): called boinc_finish(1) </stderr_txt> ]]>
3) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6225) Posted 3 Nov 2017 by Maurice Goulois Post: Different error but all fail on pc 38733: (ubuntu 16.04 LTS) <code><core_client_version>7.8.3</core_client_version> <![CDATA[ <message> finish file present too long</message> <stderr_txt> command: ../../projects/ralph.bakerlab.org/rosetta_beta_4.05_x86_64-pc-linux-gnu @flags_rb_05_04_73708_117593__t000__ab_robetta -in:file:boinc_wu_zip input_rb_05_04_73708_117593__t000__ab_robetta.zip -in:file:fasta t000_.fasta -frag3 t000_.200.3mers.gz -fragB t000_.200.3mers.gz -fragA t000_.200.9mers.gz -constraints::cst_file t000_.fasta.CB.cst -constraints:cst_weight 3.0 -constraints::cst_fa_file t000_.fasta.MIN.cst -constraints:cst_fa_weight 3.0 -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 600 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2635422 Starting watchdog... Watchdog active. ERROR: unrecognized aa type OU3_ALA ERROR:: Exit from: src/core/chemical/AA.cc line: 270 </code>