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21) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4668) Posted 6 Feb 2009 by I _ quit Post: 1irg__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1irg_-native_frag__7418_1_0 Exit status -1073741819 (0xffffffffc0000005) CPU time 271.375 stderr out <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3363701 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x008BB9A5 read attempt to address 0x12166000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 6.1.5 Dump Timestamp : 02/06/09 14:25:57 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 Debugger Engine : 4.0.5.0 Symbol Search Path: E:boincprojectsslots3;E:boincprojectsprojectsralph.bakerlab.org;srvC:DOCUME~1MeLOCALS~1Tempsymbolshttp://msdl.microsoft.com/download/symbols;srvC:DOCUME~1MeLOCALS~1Tempsymbolshttp://boinc.bakerlab.org/rosetta/symstore SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded the above 2 lines repeat greater than 10 times
22) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4667) Posted 6 Feb 2009 by I _ quit Post: 2dlb__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2dlb_-native_frag__7418_1_0 5.9375 stderr out <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3363601 ERROR:: Exit from: .fragments.cc line: 769 </stderr_txt> ]]>
23) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4666) Posted 6 Feb 2009 by I _ quit Post: 2mlt__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2mlt_-native_frag__7418_1_0 big error dump <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3363541 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x008BB7E2 read attempt to address 0x122B0000 Engaging BOINC Windows Runtime Debugger... Dump Timestamp : 02/06/09 22:07:25 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 Debugger Engine : 4.0.5.0 Symbol Search Path: E:boincprojectsslots3;E:boincprojectsprojectsralph.bakerlab.org;srvC:DOCUME~1MeLOCALS~1Tempsymbolshttp://msdl.microsoft.com/download/symbols;srvC:DOCUME~1MeLOCALS~1Tempsymbolshttp://boinc.bakerlab.org/rosetta/symstore SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) these last two lines repeat more than 10 times.
24) Message boards : RALPH@home bug list : Bug Reports for Rosetta version 5.98 (Message 4665) Posted 6 Feb 2009 by I _ quit Post: 2dlb__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2dlb_-native_frag__7418_3_0 CPU time 6.359375 stderr out <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 14400 # random seed: 3363599 ERROR:: Exit from: .fragments.cc line: 769 </stderr_txt> ]]>
25) Message boards : RALPH@home bug list : where do we post 5.98 errors? (Message 4664) Posted 6 Feb 2009 by I _ quit Post: ahh...thanks feet1st couldnt find that thread
26) Message boards : RALPH@home bug list : where do we post 5.98 errors? (Message 4662) Posted 6 Feb 2009 by I _ quit Post: since there are some 5.98 tasks being tested here..where do we report the errors for those?
27) Message boards : RALPH@home bug list : minirosetta v1.55 bug thread (Message 4661) Posted 6 Feb 2009 by I _ quit Post: nothing today either and i got room on my system now after playing catch up again.
28) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4659) Posted 3 Feb 2009 by I _ quit Post: i see in the rosie graphics the same size of boxes for low energy and native models as those here on ralph. 6cm for low energy and 7cm for native(not including the extra mm's) on both rosie and here on ralph. the low energy model here on ralph looks a bit close to the top of the box vs rosie. but then again its hard to compare two different proteins and their rotations to each other. i am noticing that the top of the model for low energy is getting clipped by the title bar here on ralph. this is in the 1.54 rosie and the 1.56 ralph. I also started my first 1.58 and see the same dimensions and the same issue that the top of whatever strand is at the top of the low energy box gets a few mm's cut off of it if it happens to be a ribbon strand that is in a long vertical loop. in stick form the model fits into the box. box size did not change.
29) Message boards : RALPH@home bug list : minirosetta 1.58 (Message 4655) Posted 2 Feb 2009 by I _ quit Post: Feet1st, both ralph and rosie open the graphics in a reduced window on my system and i am running wide screen 1680 x1050. once i click on the the windows box to bring it to full screen it does.
30) Message boards : RALPH@home bug list : Beta 5.98 downloaded (Message 4616) Posted 30 Jan 2009 by I _ quit Post: theres no beta stuff here. rosie gave me one beta 5.98 that i already completed. that particular program comes around every now and then. rosie is spitting out mini 1.54 now and here is 1.55 and 1.56
31) Message boards : RALPH@home bug list : minirosetta v1.55 bug thread (Message 4614) Posted 30 Jan 2009 by I _ quit Post: since we are on 1.56 now, should there be a new thread for that? btw..very interesting color choice for the accepted energy line and the other line above the rmsd box. what does the blue and yellow mean and isn't there a purplish color in there as well? just completed 2 of the 1.56 tasks with no problems on 4 hr run time.
32) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4600) Posted 29 Jan 2009 by I _ quit Post: Not Paul but just came from Einstein so think I think I remember right where to look It's a long thread so for the short, extremely lucid version go straight to Gary Roberts Hope this helps. Snags we had a discussion about lockfile problem in rosie. I can't seem to find the thread(s) related to that. essentially it was just deleting the file from the slots folder where the file/folder equaled 0 bytes. once you cleaned that up and restarted boinc and had all your usual settings of memory and the such set up then it seemed to go away. also with boinc 6.4.5 the problem went away. but this was mostly with windows machines.
33) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4584) Posted 28 Jan 2009 by I _ quit Post: testD_cc2_1_8_mammoth_mix_cen_cst_hb_t342__IGNORE_THE_REST_2G0QA_19_7107_1_0 had a validate error happen. the task ran ok producing 15 decoys.
34) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4571) Posted 27 Jan 2009 by I _ quit Post: pretty good success rate on my machine 25 tasks downloaded 10 to still do 1 failure and 14 successful completions so far.
35) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4562) Posted 27 Jan 2009 by I _ quit Post: testD_cc2_1_8_mammoth_mix_cen_cst_hb_t342__IGNORE_THE_REST_2G0QA_18_7107_1_0 crashed with this error message: CPU time 1976.188 stderr out <core_client_version>6.4.5</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> BOINC:: Initializing ... ok. [2009- 1-26 23:43:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing core... Initializing options.... ok ERROR: Option file open failed for: testD_cc2_1_8_mammoth_mix_cen_cst.foldcst_chunk_general_mammoth_cst.t342_.mtyka.flags.boinc </stderr_txt> ]]>
36) Message boards : RALPH@home bug list : minirosetta v1.54 bug thread (Message 4553) Posted 26 Jan 2009 by I _ quit Post: Kinda makes me jealous ... All mine are working fine ... even the ones I am running on windows ... First two tasks for me ran ok, the next two are running ok so far with about 30 minutes left.
37) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4547) Posted 26 Jan 2009 by I _ quit Post: Please mister, can I have some more? Can't test the version with no work to do ... :) No worries - there shall be more work soon. I'm preparring another update. I just got 25 new tasks after changing my allocation percentage.
38) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4542) Posted 25 Jan 2009 by I _ quit Post: Is this due to the current updates being sent only to machines of specific types, or due to a very small number of people actually currently trying to be active in RALPH@home (I'd guess around 500)? Here's some numbers BOINC Stats for RALPH 642 active users out of 3073 HTH I got caught behind a ton of work in my buffer for Ralph and then ran up a big debt load to rosie. I have shrunk my buffer size since then. When there is work available I should get it automatically and be active in testing again.
39) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4500) Posted 23 Jan 2009 by I _ quit Post: Feet1st , this is awesome - debugging on an unprecedented level :) Nice to get an idea of what all this looks like from your point of view. These docking tasks are new and not mine - lemme track down the person submiting these and make sure the graphics app can deal with it. Mike I've seen a number of other reports of the screen saver/graphic just displaying as a black window. And I had always assumed people just weren't waiting long enough for the display to refresh. It does often take a long time, and I always assumed this was due to the allowed % of CPU time for the graphic. But, on the other hand, this wasn't an issue before about 2 or 3 months ago. I meant to point out that the screenshot shows the graphic thread has used 4:02 of CPU time, but the corresponding Ralph thread is shown with only 2:11 of CPU received so far. So the % CPU shown in the screenshot is only the last interval, but you can see from the totals that the number is roughly what it's been during the entire 4 minutes the task has been running. I was wondering if perhaps the graphic could always display at least it's grid lines, and text immediately, and perhaps a "protein information being retrieved... please wait" message in the frames. That way at least it would never just be "blank". Cool idea...I would love to see that as well.
40) Message boards : RALPH@home bug list : minirosetta v1.48-1.51 bug thread (Message 4479) Posted 22 Jan 2009 by I _ quit Post: I don't see that in my boinc manager You can find it in your slots directory. (v6.2.19) You will find the boinc_checkpoint_count file. Open it and you will see how many checkpoints you have. Also there is a list of the checkpoints. My work unit has been running for for about 34 minutes and I have accumulated 43 checkpoints. thanks for the info evan. found the file, in 3 hrs+ run time one task accumulated 561 so far and the other 305. that's a pretty healthy number for 3 hrs. feet1st looks easy enough. i may try that later. thanks mtyka - now into the 1.50 tasks and so far no errors on any of the tasks sent to my system.

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