Posts by blackbird

1) Message boards : RALPH@home bug list : Bug Report for Ralph 5.41 (Message 2577)
Posted 4 Dec 2006 by blackbird
Post:

WU 291498 crashed on SUSE Linux 10.1 - kernel 2.6.18.2-jen37-default
stderr.txt:

SIGSEGV: segmentation violation
Stack trace (34 frames):
[0x8a47b6f]
[0x8a638bc]
[0xa7ff4420]
[0x8ae4300]
[0x8ae5bb9]
[0x8ab48d7]
[0x8a9a1ba]
[0x8a9a22d]
[0x8a9a690]
[0x8a9766a]
[0x8a98ba2]
[0x8a90e32]
[0x8a2bce1]
[0x879288c]
[0x81d88d4]
[0x8788300]
[0x804cf1d]
[0x84f40cd]
[0x861a7fd]
[0x861c62c]
[0x861e38f]
[0x862b559]
[0x84f858e]
[0x862ec65]
[0x804d695]
[0x87433d5]
[0x8745e9f]
[0x8746cc0]
[0x82ef851]
[0x84c998f]
[0x85dd0a3]
[0x85dd14c]
[0x8ac2da4]
[0x8048111]

tail stdout.txt:

Cycle: 41 -- Monte_carlo:: best_score,low_score: -502.661 -502.661
Cycle: 42 -- Monte_carlo:: best_score,low_score: -502.661 -502.661
Cycle: 43 -- Monte_carlo:: best_score,low_score: -502.661 -502.661
Cycle: 44 -- Monte_carlo:: best_score,low_score: -502.661 -502.661
Cycle: 45 -- Monte_carlo:: best_score,low_score: -502.661 -502.661
pose_docking_mcm --2 out of 45 monte carlo cycles accepted
***** pose_docking_monte_carlo_minimize *****

***** pose_docking_minimize_trial *****
WARNING!!! position and full_coord disagree!

2) Message boards : RALPH@home bug list : Bug reports for Ralph 5.25 (Message 1904)
Posted 24 Jul 2006 by blackbird
Post:

Ralph 5.25 has terminated this WU on 96.64%.
stderr.log:

Exiting...
Graphics are disabled due to configuration...
# cpu_run_time_pref: 345600
Graphics are disabled due to configuration...
# cpu_run_time_pref: 345600
Graphics are disabled due to configuration...
# cpu_run_time_pref: 345600
SIGSEGV: segmentation violation
Stack trace (20 frames):
[0x8849d1b]
[0x8861dcc]
[0xffffe420]
[0x88e40a9]
[0x88b2de7]
[0x88b51d1]
[0x809f31c]
[0x86b4609]
[0x86bab32]
[0x84b14f8]
[0x84b343b]
[0x84b6573]
[0x84b8231]
[0x87e6e77]
[0x86c3ac7]
[0x805f7c1]
[0x846e09d]
[0x8470594]
[0x88c12b4]
[0x8048111]

stdout.txt:

[T/F  OPT]Default FALSE value for [-minimize_exclude_helix]
[T/F  OPT]Default FALSE value for [-minimize_exclude_strand]
CYCLES::number is  1 x total_residue: 86
initializing full atom coordinates
BOINC :: [2006-07-23 23:31:01] :: checkpoint_decoys() :: saved decoy info :: attempted_decoys: 305 :: num_decoys: 305 :: farlx_stage: 10
dump_fullatom_pdb: farlxcheck
starting score  4429.49316 rms  0
starting full atom minimization
[T/F  OPT]Default FALSE value for [-infinite_loop]
score_filter: tag= relax_score_filter1 score= -112.872 rank= 91 max_rank= 95 nscores= 190 filter_score= -112.28

Suse Linux 10.1 on Athlon 2400+