Posts by Murasaki

1) Message boards : RALPH@home bug list : Minirosetta 2.11 (Message 5133)
Posted 8 May 2010 by Murasaki
Post:
phe_only_3dre_2z8l_ProteinInterfaceDesign_5May2010_14721_1_0 wasn't checkpointing for some reason. I noticed it had run for over an hour one day before shutting my computer down, then spotted the next day that it was back to zero.

The task did eventually produce a valid result after it was able to complete in a single computer session.
2) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4969)
Posted 19 Sep 2009 by Murasaki
Post:
Task 1610565
symm_lr8_seq_score12_A_rlbn_1wit_IGNORE_THE_REST_NATIVE_NOCON_12192_9_1

ERROR: [ERROR] Error opening symmetry file '1wit.pdb.symm'
ERROR:: Exit from: ..\..\src\core\conformation\symmetry\SymmData.cc line: 205
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Another user who crunched this WU encountered the same error.
3) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4950)
Posted 4 Sep 2009 by Murasaki
Post:
Any particular reason why RALPH@home is still testing 1.95 when Rosetta@home is already using 1.97?


The Rosetta@home message board says 1.95, 1.96 & 1.97 are the same version but with a few minor changes.
4) Message boards : RALPH@home bug list : Minirosetta 1.95 (Message 4946)
Posted 30 Aug 2009 by Murasaki
Post:
Task 1585136
myoglobin_PCS_BOINC_abrelax.1xcycles.v1_SAVE_ALL_OUT_12132_13_1

======================================================
DONE :: 6 starting structures 3145.11 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
<message>
<file_xfer_error>
<file_name>myoglobin_PCS_BOINC_abrelax.1xcycles.v1_SAVE_ALL_OUT_12132_13_1_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>


An earlier attempt to crunch this WU by another user resulted in the same xfer error.
5) Message boards : RALPH@home bug list : minirosetta 1.90 (Message 4916)
Posted 8 Aug 2009 by Murasaki
Post:
1574093
1u5p_I_164_A_ddg_predictions_8709_run6_WT.1u5p_I_164_A_.out_12063_1_0

This WU was stuck in the initialising phase for 1 hour 50 minutes and when BOINC switched to another task the Ralph process retained half of my available memory as committed (I use the option to NOT keep suspended tasks in memory). I restarted the system and let it run overnight.

Looking at it this morning I have had a massive memory leak somewhere and Ralph is stuck with the message "waiting for memory". I tried restarting to clear the memory again, but the Ralph WU retained the "waiting for memory" status and refused to start even when I suspended all other tasks.

I aborted the Ralph task as I don't believe it would have reported back on its own.
6) Message boards : RALPH@home bug list : minirosetta 1.90 (Message 4915)
Posted 8 Aug 2009 by Murasaki
Post:
Another one of the line 544 errors.
1573827
lr8_rama_map_all_ss_iter08_rlbn_1tif_IGNORE_THE_REST_NATIVE_12056_1_1


Native pose needed for OptionKeys::relax::constrain_relax_to_native_coords
ERROR:: Exit from: ..\..\src\protocols\relax\ClassicRelax.cc line: 544
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>


7) Message boards : RALPH@home bug list : minirosetta 1.90 (Message 4902)
Posted 2 Aug 2009 by Murasaki
Post:
1573375
lr8_rama_map_all_ss_iter08_rlbn_1bkr_IGNORE_THE_REST_NATIVE_12056_1_1


<core_client_version>6.4.5</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>

...
...
...

Native pose needed for OptionKeys::relax::constrain_relax_to_native_coords
ERROR:: Exit from: ..\..\src\protocols\relax\ClassicRelax.cc line: 544
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>






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