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Bug Report for Ralph 5.26

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Message boards : RALPH@home bug list : Bug Report for Ralph 5.26

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Chu
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Message 2278 - Posted 26 Sep 2006 1:48:53 UTC

    this is our first update since a long time. In this update, we include for the first time a protein-protein docking application, which is to predict the structure of a protein complex given the individual structures are known.

    Norman_RKN

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    Message 2279 - Posted 26 Sep 2006 6:47:50 UTC - in response to Message 2278.

      i´ve no checkpointing with the new app! is it a bug or a feature ;)

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      Message 2280 - Posted 26 Sep 2006 7:05:40 UTC

        Last modified: 26 Sep 2006 6:51:46 UTC

        Is it normal, that the WU is now counting in single steps the separate models?

        Count up to nearly 100% for model 1, jump back to 10% and start with model 2 etc.

        Edit - how many models can be included in 1 WU?
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        Message 2281 - Posted 26 Sep 2006 7:17:08 UTC

          1st WU is done - no error message at the BOINC manager.

          Looking into my reports:

          DOCK_1AVW_unbound_perturb_benchmark_1315_13 show up a \"validate error\"

          Biba - Inais.


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          Message 2282 - Posted 26 Sep 2006 7:56:36 UTC - in response to Message 2281.

            1st WU is done - no error message at the BOINC manager.

            Looking into my reports:

            DOCK_1AVW_unbound_perturb_benchmark_1315_13 show up a \"validate error\"

            Biba - Inais.



            Every DOCK wu I\'ve looked up has had nothing but validate errors. Does anyone know of one that\'s completed & validated successfully?

            Honza

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            Message 2283 - Posted 26 Sep 2006 8:40:28 UTC

              Same error here; suspending.
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              Message 2284 - Posted 26 Sep 2006 9:17:31 UTC

                An other one with \"validate error\"

                DOCK_1ATN_unbound_perturb_benchmark_1315_10

                Biba - Inais

                svenni96

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                Message 2285 - Posted 26 Sep 2006 10:30:27 UTC

                  Last modified: 26 Sep 2006 10:30:29 UTC

                  All my results get a validate error too.

                  It looks that the validator does not know what to do with the new results.
                  I could not believe that all results are invalid.

                  I will also suspend ralph till there is an information from one of the programmers


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                  Femue

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                  Message 2286 - Posted 26 Sep 2006 11:47:00 UTC - in response to Message 2285.

                    All my results get a validate error too.

                    It looks that the validator does not know what to do with the new results.
                    I could not believe that all results are invalid.

                    I will also suspend ralph till there is an information from one of the programmers



                    Howdie,

                    i have a 24-hour-wu that already ran for ~4 hours. I suspended it, too - but what should i do? Will the validator be corrected or is it better to abort the wu?

                    Femue

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                    Message 2287 - Posted 26 Sep 2006 12:34:45 UTC

                      First I had 3 WUs with \'Validate error\'
                      And now each one is with \'Client error\' / \'Computing\'
                      In messages window I get:
                      2006-09-26 14:02:09|ralph@home|Unrecoverable error for result DOCK_1BVK_unbound_perturb_benchmark_1315_18_1 (Niepoprawna funkcja. (0x1) - exit code 1 (0x1))
                      \'Niepoprawna funkcja\' = incorrect function
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                      Message 2288 - Posted 26 Sep 2006 12:53:55 UTC

                        Validate error

                        http://ralph.bakerlab.org/result.php?resultid=271383

                        http://ralph.bakerlab.org/result.php?resultid=271769

                        http://ralph.bakerlab.org/result.php?resultid=271016

                        Anders n
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                        Chu
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                        Message 2290 - Posted 26 Sep 2006 15:56:43 UTC

                          Thanks for all the feedbacks and reports. I started working on adding docking into Rosetta@home only from recently and am still learning how Rosetta@home and boinc work. I will consult with other experienced project developers in Baker Lab to invesgigate these errors and come back soon with answers.

                          svenni96

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                          Message 2291 - Posted 26 Sep 2006 16:23:19 UTC

                            May be you could also think about if you will grant us credits for the validation error - wus?

                            I know its still alpha, but i wasted round about 10 hours cputime today. :(
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                            Chu
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                            Message 2292 - Posted 26 Sep 2006 19:06:01 UTC

                              The validator has been updated to handle the docking output file with a slightly diifferent format and a couple of returning results have been validated with the new validator.

                              Docking application is being checkpointed, but the percentage of completion shown on the graphic was updated incorrectly in docking. This will be fixed in the next updated version.

                              Thanks for everyone\'s effort again.

                              Femue

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                              Message 2293 - Posted 26 Sep 2006 20:22:03 UTC - in response to Message 2292.

                                The validator has been updated to handle the docking output file with a slightly diifferent format and a couple of returning results have been validated with the new validator.

                                Thanks for everyone\'s effort again.


                                No problem,

                                I have it running again ;-)

                                Femue

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                                Message 2300 - Posted 29 Sep 2006 9:26:34 UTC - in response to Message 2288.

                                  Validate error

                                  http://ralph.bakerlab.org/result.php?resultid=271383

                                  http://ralph.bakerlab.org/result.php?resultid=271769

                                  http://ralph.bakerlab.org/result.php?resultid=271016

                                  Anders n



                                  Is there a way to run the faild ones thru the validator again??

                                  Anders n
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                                  Message boards : RALPH@home bug list : Bug Report for Ralph 5.26


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