Bug reports for Ralph 5.30 and 5.31 and 5.32

Message boards : RALPH@home bug list : Bug reports for Ralph 5.30 and 5.31 and 5.32

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Rhiju
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Message 2351 - Posted: 8 Oct 2006, 5:43:07 UTC

Thanks for your help in our updates over the last week!
This one may be our last, or our second-to-last one, before update Rosetta@home. We\'re testing a new strategy for folding that will allow rosetta to handle non-linear protein topologies with all the atoms present. We already have a version of this protocol (\"jumping\") in earlier versions, but it couldn\'t handle all the sidechain atoms.
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Norman_RKN

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Message 2352 - Posted: 8 Oct 2006, 7:11:05 UTC - in response to Message 2351.  
Last modified: 8 Oct 2006, 7:05:18 UTC

Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 3600
# random seed: 2897923
ERROR:: Exit at: .\\chuck.cc line:1028

</stderr_txt>

08.10.2006 08:54:59|ralph@home|Unrecoverable error for result JUMPTEST_POSERELAX_1tul__1336_10_0 (Unzulässige Funktion. (0x1) - exit code 1 (0x1))


------------------

08.10.2006 09:16:03|ralph@home|Unrecoverable error for result JUMPTEST_POSERELAX_1tul__1336_19_0 (Unzulässige Funktion. (0x1) - exit code 1 (0x1))

<core_client_version>5.5.0</core_client_version>
<message>
Unzul�ssige Funktion. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# random seed: 2897914
# cpu_run_time_pref: 3600
ERROR:: Exit at: .\\chuck.cc line:1028

</stderr_txt>




285228

285274

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Message 2354 - Posted: 8 Oct 2006, 13:48:23 UTC

Unrecoverable error for result IDL_RLX_NT_t305_CASP7_hom001_1_1335_6_0 (<file_xfer_error> <file_name>IDL_RLX_NT_t305_CASP7_hom001_1_1335_6_0_0</file_name> <error_code>-161</error_code></file_xfer_error>)

resultid=284811
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Profile paul and kirsty yates
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Message 2355 - Posted: 8 Oct 2006, 18:11:23 UTC
Last modified: 8 Oct 2006, 17:57:44 UTC

just got another error on this one
08/10/2006 14:35:41|ralph@home|Unrecoverable error for result IDL_RLX_NT_t304_CASP7_hom001_1_1332_7_1 (<file_xfer_error>

<file_name>IDL_RLX_NT_t304_CASP7_hom001_1_1332_7_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)

<core_client_version>5.4.11</core_client_version>
<stderr_txt>
ERROR:: Unable to determine sequence length from pdb file
======================================================
DONE :: 1 starting structures built 5 (nstruct) times
This process generated 0 decoys from 0 attempts
1 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
<message>
<file_xfer_error>
<file_name>IDL_RLX_NT_t296_CASP7_hom001_1_1332_7_2_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>


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Profile William Senn
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Message 2357 - Posted: 8 Oct 2006, 19:05:10 UTC

Hi,

Reporting an error as can be seen in result 285411:

resultid=285411

Hope it helps you...

Cheers,

William Senn...


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Pieface

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Message 2358 - Posted: 8 Oct 2006, 19:14:55 UTC

I\'m also getting a couple of errors on the jumptest units:

resid 285431
and
resid 285518

error info was:

Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# random seed: 2897927
ERROR:: Exit at: .\\chuck.cc line:1028

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Rhiju
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Message 2360 - Posted: 8 Oct 2006, 21:03:52 UTC - in response to Message 2358.  

Thanks to everyone for posting! I\'m working on the fix. Hopefully it will go into an update later today, but that might get delayed. Several of our computers are down today because of an air conditioning problem.

I\'m also getting a couple of errors on the jumptest units:

resid 285431
and
resid 285518

error info was:

Incorrect function. (0x1) - exit code 1 (0x1)


# random seed: 2897927
ERROR:: Exit at: .\\chuck.cc line:1028



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Profile paul and kirsty yates
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Message 2361 - Posted: 8 Oct 2006, 22:09:50 UTC

just had another 2
this one
and this one

all mine are 161 errors
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Mike Gelvin
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Message 2362 - Posted: 9 Oct 2006, 1:02:10 UTC

A -161 error
http://ralph.bakerlab.org/workunit.php?wuid=248602

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Message 2363 - Posted: 9 Oct 2006, 3:15:37 UTC

Unrecoverable error for result IDL_RLX_NT_t326_CASP7_hom001_1_1335_6_0 (Incorrect function. (0x1) - exit code 1 (0x1))

resultid=284828
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Rhiju
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Message 2364 - Posted: 9 Oct 2006, 6:35:27 UTC - in response to Message 2351.  

Ralph 5.31 should fix some of the issues that you reported. The other issues were apparently not due to the new application but due to a bad workunit, and is getting fixed.

Thanks for your help in our updates over the last week!
This one may be our last, or our second-to-last one, before update Rosetta@home. We\'re testing a new strategy for folding that will allow rosetta to handle non-linear protein topologies with all the atoms present. We already have a version of this protocol (\"jumping\") in earlier versions, but it couldn\'t handle all the sidechain atoms.


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Message 2365 - Posted: 9 Oct 2006, 12:02:34 UTC

Unrecoverable error for result IDL_RLX_NT_t339_CASP7_hom001_1_1335_6_0 (One or more arguments are invalid (0x80000003) - exit code -2147483645 (0x80000003))

resultid=284837
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Message 2366 - Posted: 9 Oct 2006, 14:02:49 UTC

09/10/06 14:34:39 PM|ralph@home|Starting task IDL_RLX_NT_t345_CASP7_hom001_1_1332_10_2 using rosetta_beta version 531
09/10/06 14:35:16 PM||Rescheduling CPU: application exited
09/10/06 14:35:16 PM|ralph@home|Computation for task IDL_RLX_NT_t345_CASP7_hom001_1_1332_10_2 finished
09/10/06 14:35:16 PM|ralph@home|Starting task IDL_RLX_NT_t350_CASP7_hom001_1_1332_10_2 using rosetta_beta version 531
09/10/06 14:35:18 PM|ralph@home|Unrecoverable error for result IDL_RLX_NT_t345_CASP7_hom001_1_1332_10_2 (<file_xfer_error> <file_name>IDL_RLX_NT_t345_CASP7_hom001_1_1332_10_2_0</file_name> <error_code>-161</error_code></file_xfer_error>)
09/10/06 14:35:18 PM|ralph@home|Deferring scheduler requests for 1 minutes and 0 seconds
09/10/06 14:35:48 PM||Rescheduling CPU: application exited
09/10/06 14:35:48 PM|ralph@home|Computation for task IDL_RLX_NT_t350_CASP7_hom001_1_1332_10_2 finished
09/10/06 14:35:49 PM|ralph@home|Unrecoverable error for result IDL_RLX_NT_t350_CASP7_hom001_1_1332_10_2 (<file_xfer_error> <file_name>IDL_RLX_NT_t350_CASP7_hom001_1_1332_10_2_0</file_name> <error_code>-161</error_code></file_xfer_error>)
09/10/06 14:35:49 PM|ralph@home|Deferring scheduler requests for 1 minutes and 0 seconds
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Message 2369 - Posted: 9 Oct 2006, 20:41:11 UTC
Last modified: 9 Oct 2006, 20:26:52 UTC

I have a WU: JUMPTEST_POSERELAX_VARY_BOND_ANGLES_1tul__1336_32_0 (5.31)

stuck at 1% - Model 1 - Step 360000 for 20 minutes. Then starts working.




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Message 2370 - Posted: 9 Oct 2006, 21:12:16 UTC - in response to Message 2369.  

I have a WU: JUMPTEST_POSERELAX_VARY_BOND_ANGLES_1tul__1336_32_0 (5.31)

stuck at 1% - Model 1 - Step 360000 for 20 minutes. Then starts working.



After 45 minutes: step 360131 but still at 1%. Don\'t know if it\'s normal or not.
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Brian B

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Message 2371 - Posted: 10 Oct 2006, 1:14:32 UTC

This wu/result failed with these messages:

10/09/2006 09:03:07 PM|ralph@home|Starting result IDL_RLX_NT_t376_CASP7_hom001_1_1332_1_2 using rosetta_beta version 530
10/09/2006 09:03:33 PM|ralph@home|Sending scheduler request to http://ralph.bakerlab.org/ralph_cgi/cgi
10/09/2006 09:03:33 PM|ralph@home|Reason: To fetch work
10/09/2006 09:03:33 PM|ralph@home|Requesting 8640 seconds of new work
10/09/2006 09:03:38 PM|ralph@home|Scheduler request to http://ralph.bakerlab.org/ralph_cgi/cgi succeeded
10/09/2006 09:03:40 PM|ralph@home|Started download of rosetta_beta_5.31_windows_intelx86.exe
10/09/2006 09:03:40 PM|ralph@home|Started download of 1BRC.pdb
10/09/2006 09:03:43 PM||request_reschedule_cpus: process exited
10/09/2006 09:03:43 PM|ralph@home|Computation for result IDL_RLX_NT_t376_CASP7_hom001_1_1332_1_2 finished
10/09/2006 09:03:44 PM|ralph@home|Unrecoverable error for result IDL_RLX_NT_t376_CASP7_hom001_1_1332_1_2 (<file_xfer_error> <file_name>IDL_RLX_NT_t376_CASP7_hom001_1_1332_1_2_0</file_name> <error_code>-161</error_code> <error_message></error_message></file_xfer_error>)

This was on 5.30 though...

Good luck
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Message 2372 - Posted: 10 Oct 2006, 2:29:06 UTC

Result ID 286395
Name DOC_1WEJ_u_pert_mcm_bbmin_1338_8_0
Workunit 252472
Created 9 Oct 2006 22:58:45 UTC
Sent 9 Oct 2006 23:06:02 UTC
Received 10 Oct 2006 2:07:08 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 2078
Report deadline 13 Oct 2006 23:06:02 UTC
CPU time 5628.653606
stderr out

<core_client_version>5.6.5</core_client_version>
<![CDATA[
<stderr_txt>
# random seed: 2896945
# cpu_run_time_pref: 7200
WARNING! error deleting file .\\aa1WEJ.out
WARNING! error deleting file .\\aa1WEJ.out.bonds
WARNING! error deleting file .\\aa1WEJ.out.rot_templates
======================================================
DONE :: 1 starting structures built 3 (nstruct) times
This process generated 3 decoys from 4 attempts
0 starting pdbs were skipped
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 9.54912155099347
Granted credit 0
application version 5.31
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Message 2373 - Posted: 10 Oct 2006, 3:43:04 UTC

>>> Getting a few errors:-
http://ralph.bakerlab.org/workunit.php?wuid=252767
http://ralph.bakerlab.org/workunit.php?wuid=252768

Windows machine, getting error message
\"Incorrect function. (0x1)-exit code 1 (0x1)
ERROR:: Exit at: dock_structure.cc line:431\"

Also error on Linux machine:-
http://ralph.bakerlab.org/workunit.php?wuid=252033

\"process exited with code 1 (0x1)
ERROR:: Exit at: dock_structure.cc line:431\"


Note:-- Thanks Chu for responding to my troubles with 5.28, hopefully I will have no more trouble like that, although I now have my 4800+ AMD machine duplicated across Ralph, Rosetta and Einstein projects, I will have to live with it.

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Chu
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Message 2374 - Posted: 10 Oct 2006, 5:25:14 UTC - in response to Message 2373.  

We have noticed this kind of errors under 5.31 and just updated the app to 5.32. Hopefully it will be fixed.
>>> Getting a few errors:-
http://ralph.bakerlab.org/workunit.php?wuid=252767
http://ralph.bakerlab.org/workunit.php?wuid=252768

Windows machine, getting error message
\"Incorrect function. (0x1)-exit code 1 (0x1)
ERROR:: Exit at: dock_structure.cc line:431\"

Also error on Linux machine:-
http://ralph.bakerlab.org/workunit.php?wuid=252033

\"process exited with code 1 (0x1)
ERROR:: Exit at: dock_structure.cc line:431\"


Note:-- Thanks Chu for responding to my troubles with 5.28, hopefully I will have no more trouble like that, although I now have my 4800+ AMD machine duplicated across Ralph, Rosetta and Einstein projects, I will have to live with it.

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Message 2375 - Posted: 10 Oct 2006, 12:04:58 UTC

> On my Windows machine, I am still having screensaver lockups. It has carried over from 5.28. The screensaver will be processing and showing data fine but after a long time on (probably greater than 1 hour?) when I move the mouse nothing happens and the screensaver is doing nothing either. Task manager shows the programme is still working fine but not the screensaver. I tried stopping BoincManager.exe and boinc.exe but this did nothing, I can still get the start menu up but unable to get rid of screensaver background. I was about to reboot when I thought to double click on the screensaver and my computer was returned to me.
Has anyone else had this happen?
Not a problem on Linux machines as they don\'t have the screensaver function. Can it be turned of in Windows?
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