bug report for version 5.64

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Bin Qian

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Message 3067 - Posted: 5 May 2007, 7:05:50 UTC

Please report problem you encountered for version 5.64 here. Thanks!
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Dr Who Fan
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Message 3070 - Posted: 5 May 2007, 16:41:16 UTC

Client error / Computer error

http://ralph.bakerlab.org/result.php?resultid=504923

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Unable to determine sequence length from pdb file
# random seed: 2680658
ERROR:: Exit from: .\\pose.cc line: 1929

</stderr_txt>
]]>

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Thomas Leibold

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Message 3075 - Posted: 6 May 2007, 0:51:31 UTC - in response to Message 3067.  

Please report problem you encountered for version 5.64 here. Thanks!


First 5.64 workunit 448473 failed pretty quick:

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 14400
# random seed: 2679311
Unable to find fullatom number for constraint atom:
Atom Type5Residue type 6 Type CB Fullatom aa 6 Fullatom aav 1
ERROR:: Exit from: constraints.cc line: 464

</stderr_txt>
]]>
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Profile anders n

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Message 3078 - Posted: 6 May 2007, 5:01:01 UTC

I got a failure on my MAC.

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
process got signal 6
</message>
<stderr_txt>
Rosetta@home Macintosh Stack Size checker.
Original size: 8388608.
Maximum size: 0.
RLIM_INFINITY 67108864
# cpu_run_time_pref: 14400
SIGBUS: bus error

Crashed executable name: rosetta_beta_5.64_i686-apple-darwin
built using BOINC library version 5.9.5
Machine type Intel 80486
System version: Macintosh OS 10.4.9 build 8P2137
Sun May 6 04:29:25 2007
/Users/boinc/boinc_build/rosetta_5.64/boinc/mac_build/../lib/mac/QCrashReport.c:343: failed assertion `*crRefPtr == NULL\'
Caught SIGABRT in graphics thread

This WU http://ralph.bakerlab.org/result.php?resultid=506638

Anders n

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fastdude

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Message 3079 - Posted: 6 May 2007, 7:17:16 UTC

1. the cpu time & progress looks good, but the time to completion is meaningless.
the time allowed is 2H but the To completion shows 5H with 5% done

2. I closed BOINC manager (right click - exit) via the task bar icon, at about 7% & 12min then reloaded BOINC, but the running task started from 0 CPU time & 0% Progress, so it lost any results that should have been saved?

save to disk is set to 120sec.
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Profile anders n

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Message 3080 - Posted: 6 May 2007, 7:51:37 UTC - in response to Message 3079.  

1. the cpu time & progress looks good, but the time to completion is meaningless.
the time allowed is 2H but the To completion shows 5H with 5% done

2. I closed BOINC manager (right click - exit) via the task bar icon, at about 7% & 12min then reloaded BOINC, but the running task started from 0 CPU time & 0% Progress, so it lost any results that should have been saved?

save to disk is set to 120sec.


Om my P4 2,8 the tasks I got today checkpoints every 10-12 min.

Anders n

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Message 3083 - Posted: 6 May 2007, 23:53:53 UTC

Client error / Computer error
http://ralph.bakerlab.org/result.php?resultid=506042
<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
# random seed: 2679328
Unable to find fullatom number for constraint atom:
Atom Type5Residue type 6 Type CB Fullatom aa 6 Fullatom aav 1
ERROR:: Exit from: .\\constraints.cc line: 464

</stderr_txt>
]]>


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Message 3086 - Posted: 8 May 2007, 7:02:21 UTC
Last modified: 8 May 2007, 7:02:39 UTC

Just a heads up don\'t know if this is relevant here but on Einstien they have had much troubel with process \"Caught SIGABRT in graphics thread\" and
\"got signal 11\" mostley on LINUX.

I reported my first error on that 5 posts down and now I saw a report on Rosetta to.

Hope it\'s nothing.

Anders n

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Message 3087 - Posted: 8 May 2007, 23:14:24 UTC

Download Errors >
Outcome: Client error /Client state: Downloading / Exit status -186 (0xffffffffffffff46)

http://ralph.bakerlab.org/result.php?resultid=508426

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>frags83_1mkyA.psipred_ss2.gz</file_name>
<error_code>-200</error_code>
</file_xfer_error>

</message>
]]>

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Message 3088 - Posted: 8 May 2007, 23:15:40 UTC

Download Errors >
Outcome: Client error /Client state: Downloading / Exit status -186 (0xffffffffffffff46)

http://ralph.bakerlab.org/result.php?resultid=508427

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>frags83_1b72_.psipred_ss2.gz</file_name>
<error_code>-200</error_code>
</file_xfer_error>

</message>
]]>



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Message 3089 - Posted: 8 May 2007, 23:17:32 UTC

Download Errors >
Outcome: Client error /Client state: Downloading / Exit status -186 (0xffffffffffffff46)

http://ralph.bakerlab.org/result.php?resultid=508429

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
WU download error: couldn\'t get input files:
<file_xfer_error>
<file_name>frags83_1b72_.psipred_ss2.gz</file_name>
<error_code>-200</error_code>
</file_xfer_error>

</message>
]]>

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Thomas Leibold

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Message 3090 - Posted: 11 May 2007, 5:05:43 UTC - in response to Message 3083.  

This error on workunit 448473 is almost identical to the earlier one posted by Dr. Who Fan:

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 14400
# random seed: 2679311
Unable to find fullatom number for constraint atom:
Atom Type5Residue type 6 Type CB Fullatom aa 6 Fullatom aav 1
ERROR:: Exit from: constraints.cc line: 464

</stderr_txt>
]]>
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ferry

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Message 3091 - Posted: 12 May 2007, 9:27:51 UTC

My dual Opteron 64bit Linux system (Ubuntu 7.04) is not receiving any work. It keeps requesting, but not getting anything. If I can help you out with additional information, please reply and say so :)

Regards,
BorkesComputers
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Profile anders n

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Message 3092 - Posted: 12 May 2007, 9:30:48 UTC - in response to Message 3091.  

My dual Opteron 64bit Linux system (Ubuntu 7.04) is not receiving any work. It keeps requesting, but not getting anything. If I can help you out with additional information, please reply and say so :)

Regards,
BorkesComputers


This is a test project so there are not work availabel at all times.

Stick arround and you will get your share :)

Anders n



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Odysseus

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Message 3093 - Posted: 13 May 2007, 0:56:03 UTC

My G4/733 (Mac OS v10.3.9, BOINC v5.8.17) got an error with “Exit status 6 (0x6)” on vgcc__BOINC_ABRELAX-vgcc_-_2019_203, just twelve seconds in; a crash-dump is in the output file along with “SIGBUS: bus error” and “Caught SIGABRT in graphics thread”. Would you like me to post the system’s crash log (if any)?
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Phil

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Message 3094 - Posted: 13 May 2007, 19:06:17 UTC - in response to Message 3067.  
Last modified: 13 May 2007, 19:07:00 UTC

First time I\'ve seen one and wish I\'d had more time and do a screen capture, but this unit http://ralph.bakerlab.org/result.php?resultid=509878 displayed the freaky blue dot syndrome.
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mdettweiler
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Message 3095 - Posted: 13 May 2007, 20:42:44 UTC - in response to Message 3094.  

First time I\'ve seen one and wish I\'d had more time and do a screen capture, but this unit http://ralph.bakerlab.org/result.php?resultid=509878 displayed the freaky blue dot syndrome.


What\'s the blue dot syndrome?
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Khorun

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Message 3096 - Posted: 13 May 2007, 20:51:47 UTC
Last modified: 13 May 2007, 20:54:51 UTC

I dont know if this is a bug or not.. but posting anyways.
My last 2 WU\'s have gone up to about 80-85% going fine and then the remaining time just stops counting down. Now my current WU is at 94% saying 10 min left as it has done for the last hour or so.
So maybe it is some kind of bug when counting the % or something?
My last one took maybe 4 hours to complete which is def. higher than the usual 55 to 90 min so I think this is some kind of special WU.

My current WU is here:
Current
and the one before:
The One before

as you can see its the same naming i.e \"1gidA_BOINC\"



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Profile Jack Shaftoe

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Message 3097 - Posted: 14 May 2007, 0:48:15 UTC - in response to Message 3095.  

First time I\'ve seen one and wish I\'d had more time and do a screen capture, but this unit http://ralph.bakerlab.org/result.php?resultid=509878 displayed the freaky blue dot syndrome.


What\'s the blue dot syndrome?


Indeed! It sounds bad!
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Phil

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Message 3098 - Posted: 14 May 2007, 3:25:07 UTC - in response to Message 3095.  
Last modified: 14 May 2007, 3:32:02 UTC

First time I\'ve seen one and wish I\'d had more time and do a screen capture, but this unit http://ralph.bakerlab.org/result.php?resultid=509878 displayed the freaky blue dot syndrome.


What\'s the blue dot syndrome?



see this message: http://ralph.bakerlab.org/forum_thread.php?id=295&nowrap=true#2872
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