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Bug reports for 5.69-5.70

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Rhiju
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Message 3219 - Posted 24 Jun 2007 22:51:28 UTC

    Thanks for continuing to post problems...
    ____________

    j2satx

    Joined: Feb 17 06
    Posts: 42
    ID: 467
    Credit: 168,797
    RAC: 0
    Message 3220 - Posted 25 Jun 2007 2:06:20 UTC

      Result ID 565131
      Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2158_1_0
      Workunit 500452
      Created 24 Jun 2007 23:20:48 UTC
      Sent 24 Jun 2007 23:38:55 UTC
      Received 25 Jun 2007 1:57:22 UTC
      Server state Over
      Outcome Client error
      Client state Compute error
      Exit status 1 (0x1)
      Computer ID 8761
      Report deadline 28 Jun 2007 23:38:55 UTC
      CPU time 2.234375
      stderr out

      <core_client_version>5.10.8</core_client_version>
      <![CDATA[
      <message>
      Incorrect function. (0x1) - exit code 1 (0x1)
      </message>
      <stderr_txt>
      # cpu_run_time_pref: 7200
      ERROR:: Exit from: .\\pose.cc line: 769

      </stderr_txt>
      ]]>

      Validate state Invalid
      Claimed credit 0.00912644627413973
      Granted credit 0
      application version 5.69
      ____________

      j2satx

      Joined: Feb 17 06
      Posts: 42
      ID: 467
      Credit: 168,797
      RAC: 0
      Message 3227 - Posted 25 Jun 2007 16:49:20 UTC

        Result ID 565964
        Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_14_0
        Workunit 501227
        Created 25 Jun 2007 3:32:16 UTC
        Sent 25 Jun 2007 4:43:14 UTC
        Received 25 Jun 2007 4:47:22 UTC
        Server state Over
        Outcome Client error
        Client state Compute error
        Exit status 1 (0x1)
        Computer ID 7180
        Report deadline 29 Jun 2007 4:43:14 UTC
        CPU time 2.936183
        stderr out

        <core_client_version>5.10.2</core_client_version>
        <![CDATA[
        <message>
        process exited with code 1 (0x1, -255)
        </message>
        <stderr_txt>
        Graphics are disabled due to configuration...
        # cpu_run_time_pref: 7200
        ERROR:: Exit from: pose.cc line: 769

        </stderr_txt>
        ]]>

        Validate state Invalid
        Claimed credit 0.0055551920526446
        Granted credit 0
        application version 5.69
        ____________

        j2satx

        Joined: Feb 17 06
        Posts: 42
        ID: 467
        Credit: 168,797
        RAC: 0
        Message 3228 - Posted 25 Jun 2007 16:50:20 UTC

          Result ID 565493
          Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_7_0
          Workunit 500798
          Created 25 Jun 2007 0:51:25 UTC
          Sent 25 Jun 2007 1:22:21 UTC
          Received 25 Jun 2007 2:36:27 UTC
          Server state Over
          Outcome Client error
          Client state Compute error
          Exit status 1 (0x1)
          Computer ID 7180
          Report deadline 29 Jun 2007 1:22:21 UTC
          CPU time 1
          stderr out

          <core_client_version>5.10.2</core_client_version>
          <![CDATA[
          <message>
          process exited with code 1 (0x1, -255)
          </message>
          <stderr_txt>
          Graphics are disabled due to configuration...
          # cpu_run_time_pref: 7200
          ERROR:: Exit from: pose.cc line: 769

          </stderr_txt>
          ]]>

          Validate state Invalid
          Claimed credit 0.00189197745939017
          Granted credit 0
          application version 5.69
          ____________

          j2satx

          Joined: Feb 17 06
          Posts: 42
          ID: 467
          Credit: 168,797
          RAC: 0
          Message 3229 - Posted 25 Jun 2007 16:51:03 UTC

            Result ID 566072
            Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
            Workunit 500961
            Created 25 Jun 2007 4:05:10 UTC
            Sent 25 Jun 2007 4:47:22 UTC
            Received 25 Jun 2007 8:41:02 UTC
            Server state Over
            Outcome Client error
            Client state Compute error
            Exit status 1 (0x1)
            Computer ID 7180
            Report deadline 29 Jun 2007 4:47:22 UTC
            CPU time 0
            stderr out

            <core_client_version>5.10.2</core_client_version>
            <![CDATA[
            <message>
            process exited with code 1 (0x1, -255)
            </message>
            <stderr_txt>
            Graphics are disabled due to configuration...
            # cpu_run_time_pref: 7200
            ERROR:: Exit from: pose.cc line: 769

            </stderr_txt>
            ]]>

            Validate state Invalid
            Claimed credit 0
            Granted credit 0
            application version 5.69
            ____________

            Rhiju
            Forum moderator
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            Joined: Feb 14 06
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            Message 3230 - Posted 25 Jun 2007 19:04:22 UTC - in response to Message 3229.

              Hi: Thanks, I figured out the problem with this WU!


              Result ID 566072
              Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
              Workunit 500961
              Created 25 Jun 2007 4:05:10 UTC
              Sent 25 Jun 2007 4:47:22 UTC
              Received 25 Jun 2007 8:41:02 UTC
              Server state Over
              Outcome Client error
              Client state Compute error
              Exit status 1 (0x1)
              Computer ID 7180
              Report deadline 29 Jun 2007 4:47:22 UTC
              CPU time 0
              stderr out

              <core_client_version>5.10.2</core_client_version>
              <![CDATA[
              <message>
              process exited with code 1 (0x1, -255)
              </message>
              <stderr_txt>
              Graphics are disabled due to configuration...
              # cpu_run_time_pref: 7200
              ERROR:: Exit from: pose.cc line: 769

              </stderr_txt>
              ]]>

              Validate state Invalid
              Claimed credit 0
              Granted credit 0
              application version 5.69


              ____________

              j2satx

              Joined: Feb 17 06
              Posts: 42
              ID: 467
              Credit: 168,797
              RAC: 0
              Message 3231 - Posted 25 Jun 2007 20:08:19 UTC - in response to Message 3230.

                Hi: Thanks, I figured out the problem with this WU!


                Result ID 566072
                Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
                Workunit 500961
                Created 25 Jun 2007 4:05:10 UTC
                Sent 25 Jun 2007 4:47:22 UTC
                Received 25 Jun 2007 8:41:02 UTC
                Server state Over
                Outcome Client error
                Client state Compute error
                Exit status 1 (0x1)
                Computer ID 7180
                Report deadline 29 Jun 2007 4:47:22 UTC
                CPU time 0
                stderr out

                <core_client_version>5.10.2</core_client_version>
                <![CDATA[
                <message>
                process exited with code 1 (0x1, -255)
                </message>
                <stderr_txt>
                Graphics are disabled due to configuration...
                # cpu_run_time_pref: 7200
                ERROR:: Exit from: pose.cc line: 769

                </stderr_txt>
                ]]>

                Validate state Invalid
                Claimed credit 0
                Granted credit 0
                application version 5.69



                Is it the WU or 5.69?

                ____________

                Profile iwi
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                Joined: Jan 26 07
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                Message 3232 - Posted 25 Jun 2007 21:46:15 UTC

                  Last modified: 25 Jun 2007 22:03:52 UTC

                  compute error, but for 5.68 - my mistake, not this bug list.

                  http://ralph.bakerlab.org/result.php?resultid=564845

                  j2satx

                  Joined: Feb 17 06
                  Posts: 42
                  ID: 467
                  Credit: 168,797
                  RAC: 0
                  Message 3233 - Posted 26 Jun 2007 4:01:34 UTC

                    Result ID 566748
                    Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_12_1
                    Workunit 501103
                    Created 25 Jun 2007 8:38:13 UTC
                    Sent 25 Jun 2007 9:03:44 UTC
                    Received 26 Jun 2007 0:28:39 UTC
                    Server state Over
                    Outcome Client error
                    Client state Compute error
                    Exit status 1 (0x1)
                    Computer ID 7181
                    Report deadline 29 Jun 2007 9:03:44 UTC
                    CPU time 0
                    stderr out

                    <core_client_version>5.10.2</core_client_version>
                    <![CDATA[
                    <message>
                    process exited with code 1 (0x1, -255)
                    </message>
                    <stderr_txt>
                    Graphics are disabled due to configuration...
                    # cpu_run_time_pref: 7200
                    ERROR:: Exit from: pose.cc line: 769

                    </stderr_txt>
                    ]]>

                    Validate state Invalid
                    Claimed credit 0
                    Granted credit 0
                    application version 5.69
                    ____________

                    Profile anders n

                    Joined: Feb 16 06
                    Posts: 166
                    ID: 91
                    Credit: 131,419
                    RAC: 0
                    Message 3234 - Posted 26 Jun 2007 6:02:19 UTC

                      Last modified: 26 Jun 2007 6:03:34 UTC

                      This Wu failed after trying to restart from last checkpoint.

                      (I update BOINC so it was taken out of memory)

                      http://ralph.bakerlab.org/result.php?resultid=569191

                      Anders n
                      ____________

                      Rhiju
                      Forum moderator
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                      Message 3235 - Posted 26 Jun 2007 6:51:42 UTC - in response to Message 3234.

                        Great, that\'s what I was hoping for actually. We\'re testing a mode of ralph in which we can run an old app version and a new app version at the same time. This is to allow some of our workunits to continue with a stable version to enable consistent results for publication, while other workunits can take advantage of later bug fixes and features. That workunit has a checkpointing issue with 5.68, but works well with 5.69 (now 5.70); I wanted to make sure I could send out one batch of jobs for the old app and one for the newer app!


                        This Wu failed after trying to restart from last checkpoint.

                        (I update BOINC so it was taken out of memory)

                        http://ralph.bakerlab.org/result.php?resultid=569191

                        Anders n


                        ____________

                        Profile anders n

                        Joined: Feb 16 06
                        Posts: 166
                        ID: 91
                        Credit: 131,419
                        RAC: 0
                        Message 3236 - Posted 26 Jun 2007 6:57:57 UTC - in response to Message 3235.

                          Just for Info this Wu was restarted at the same time and continued as usual.

                          http://ralph.bakerlab.org/result.php?resultid=569051




                          Great, that\'s what I was hoping for actually. We\'re testing a mode of ralph in which we can run an old app version and a new app version at the same time. This is to allow some of our workunits to continue with a stable version to enable consistent results for publication, while other workunits can take advantage of later bug fixes and features. That workunit has a checkpointing issue with 5.68, but works well with 5.69 (now 5.70); I wanted to make sure I could send out one batch of jobs for the old app and one for the newer app!


                          This Wu failed after trying to restart from last checkpoint.

                          (I update BOINC so it was taken out of memory)

                          http://ralph.bakerlab.org/result.php?resultid=569191

                          Anders n



                          ____________

                          Profile anders n

                          Joined: Feb 16 06
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                          Message 3237 - Posted 27 Jun 2007 4:15:19 UTC

                            It seem the <error_code>-161</error_code>
                            from 5.68 is still here.
                            http://ralph.bakerlab.org/workunit.php?wuid=499558

                            Anders n
                            ____________

                            Profile anders n

                            Joined: Feb 16 06
                            Posts: 166
                            ID: 91
                            Credit: 131,419
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                            Message 3239 - Posted 27 Jun 2007 9:48:17 UTC - in response to Message 3237.

                              1 more
                              2007-06-27 11:35:41|ralph@home|Reason: Unrecoverable error for result SSH1_BOINC_MFR_ABRELAX_2150_47_1 (<file_xfer_error> <file_name>SSH1_BOINC_MFR_ABRELAX_2150_47_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)

                              http://ralph.bakerlab.org/workunit.php?wuid=499792

                              It seem the <error_code>-161</error_code>
                              from 5.68 is still here.
                              http://ralph.bakerlab.org/workunit.php?wuid=499558

                              Anders n


                              ____________

                              Profile Conan
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                              Joined: Feb 16 06
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                              Message 3240 - Posted 28 Jun 2007 7:43:30 UTC

                                > Had this WU lock up for maybe 1 hour 33 minutes at least (shows 10 minutes in Boinc), going on the other Ralph WU that came in after this one.
                                I suspended then resumed the Work Unit and it went straight to Computational error.

                                This WU
                                ____________

                                Profile anders n

                                Joined: Feb 16 06
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                                Message 3243 - Posted 28 Jun 2007 10:02:44 UTC

                                  Not a bug but some of the lates Wu-s are huge and take up to 600 in VM.

                                  Anders n
                                  ____________

                                  j2satx

                                  Joined: Feb 17 06
                                  Posts: 42
                                  ID: 467
                                  Credit: 168,797
                                  RAC: 0
                                  Message 3244 - Posted 28 Jun 2007 12:20:40 UTC

                                    Result ID 573207
                                    Name 1tol_BOINC_MFR_ABRELAX_2152_27_3
                                    Workunit 499578
                                    Created 27 Jun 2007 12:08:48 UTC
                                    Sent 27 Jun 2007 12:08:50 UTC
                                    Received 28 Jun 2007 3:46:52 UTC
                                    Server state Over
                                    Outcome Client error
                                    Client state Compute error
                                    Exit status 0 (0x0)
                                    Computer ID 7012
                                    Report deadline 1 Jul 2007 12:08:50 UTC
                                    CPU time 6771.143169
                                    stderr out

                                    <core_client_version>5.10.2</core_client_version>
                                    <![CDATA[
                                    <stderr_txt>
                                    Graphics are disabled due to configuration...
                                    # cpu_run_time_pref: 7200
                                    # random seed: 2604966
                                    ======================================================
                                    DONE :: 1 starting structures 6770.14 cpu seconds
                                    This process generated 7 decoys from 7 attempts
                                    ======================================================


                                    BOINC :: Watchdog shutting down...
                                    BOINC :: BOINC support services shutting down...

                                    </stderr_txt>
                                    <message>
                                    <file_xfer_error>
                                    <file_name>1tol_BOINC_MFR_ABRELAX_2152_27_3_0</file_name>
                                    <error_code>-161</error_code>
                                    </file_xfer_error>

                                    </message>
                                    ]]>

                                    Validate state Invalid
                                    Claimed credit 19.665808052477
                                    Granted credit 0
                                    application version 5.70
                                    ____________

                                    j2satx

                                    Joined: Feb 17 06
                                    Posts: 42
                                    ID: 467
                                    Credit: 168,797
                                    RAC: 0
                                    Message 3245 - Posted 28 Jun 2007 12:22:14 UTC

                                      Result ID 573538
                                      Name 1wrp__BOINC_SYMM_FOLD_AND_DOCK-1wrp_-foldanddock__2185_8_0
                                      Workunit 508020
                                      Created 28 Jun 2007 4:55:27 UTC
                                      Sent 28 Jun 2007 5:02:08 UTC
                                      Received 28 Jun 2007 10:51:37 UTC
                                      Server state Over
                                      Outcome Client error
                                      Client state Compute error
                                      Exit status 193 (0xc1)
                                      Computer ID 7012
                                      Report deadline 2 Jul 2007 5:02:08 UTC
                                      CPU time 5
                                      stderr out

                                      <core_client_version>5.10.2</core_client_version>
                                      <![CDATA[
                                      <message>
                                      process exited with code 193 (0xc1, -63)
                                      </message>
                                      <stderr_txt>
                                      Graphics are disabled due to configuration...
                                      # cpu_run_time_pref: 7200
                                      # random seed: 2524905
                                      SIGSEGV: segmentation violation
                                      Stack trace (12 frames):
                                      [0x8cf2edb]
                                      [0x8cedd0c]
                                      [0xffffe420]
                                      [0x804e052]
                                      [0x88f3960]
                                      [0x88f8ff6]
                                      [0x8937f94]
                                      [0x85c799e]
                                      [0x86f62b6]
                                      [0x86f63d6]
                                      [0x8d56dd4]
                                      [0x8048111]

                                      Exiting...

                                      </stderr_txt>
                                      ]]>

                                      Validate state Invalid
                                      Claimed credit 0.0145217783479398
                                      Granted credit 0
                                      application version 5.70
                                      ____________

                                      j2satx

                                      Joined: Feb 17 06
                                      Posts: 42
                                      ID: 467
                                      Credit: 168,797
                                      RAC: 0
                                      Message 3246 - Posted 28 Jun 2007 12:22:45 UTC

                                        Result ID 573553
                                        Name 1wrp__BOINC_SYMM_FOLD_AND_DOCK-1wrp_-foldanddock__2186_8_0
                                        Workunit 508035
                                        Created 28 Jun 2007 4:55:27 UTC
                                        Sent 28 Jun 2007 5:06:17 UTC
                                        Received 28 Jun 2007 10:51:37 UTC
                                        Server state Over
                                        Outcome Client error
                                        Client state Compute error
                                        Exit status 193 (0xc1)
                                        Computer ID 7012
                                        Report deadline 2 Jul 2007 5:06:17 UTC
                                        CPU time 4
                                        stderr out

                                        <core_client_version>5.10.2</core_client_version>
                                        <![CDATA[
                                        <message>
                                        process exited with code 193 (0xc1, -63)
                                        </message>
                                        <stderr_txt>
                                        Graphics are disabled due to configuration...
                                        # cpu_run_time_pref: 7200
                                        # random seed: 2524755
                                        SIGSEGV: segmentation violation
                                        Stack trace (12 frames):
                                        [0x8cf2edb]
                                        [0x8cedd0c]
                                        [0xffffe420]
                                        [0x804e052]
                                        [0x88f3960]
                                        [0x88f8ff6]
                                        [0x8937f94]
                                        [0x85c799e]
                                        [0x86f62b6]
                                        [0x86f63d6]
                                        [0x8d56dd4]
                                        [0x8048111]

                                        Exiting...

                                        </stderr_txt>
                                        ]]>

                                        Validate state Invalid
                                        Claimed credit 0.0116174226783518
                                        Granted credit 0
                                        application version 5.70
                                        ____________

                                        HTH

                                        Joined: Mar 6 06
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                                        Message 3247 - Posted 28 Jun 2007 14:05:58 UTC

                                          A compute error for result 573807.
                                          ____________

                                          John McLeod VII
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                                          Joined: Feb 16 06
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                                          Message 3248 - Posted 28 Jun 2007 14:30:49 UTC

                                            I just had 5.70 crash on one of my machines. What is worse, it brought up a dialog box indicating a thrown and uncaught exception. This dialog box effectively stopped BOINC. All exceptions should be caught at the topmost level, and used to generate an error message that is sent back to the project.
                                            ____________


                                            BOINC WIKI

                                            Profile [AF>Le_Pommier] ninicool
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                                            Message 3249 - Posted 28 Jun 2007 15:11:42 UTC

                                              hello,
                                              4 WU this day - application version 5.70
                                              3 Ok, but 1 \"Compute error\" : [url=http://ralph.bakerlab.org/result.php?resultid=573411]http://ralph.bakerlab.org/result.php?resultid=573411[url]
                                              ____________

                                              RAD-Poland

                                              Joined: Apr 6 07
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                                              Credit: 100,029
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                                              Message 3250 - Posted 28 Jun 2007 16:45:29 UTC

                                                Last modified: 28 Jun 2007 16:45:43 UTC

                                                application version 5.70

                                                Work Unit http://ralph.bakerlab.org/result.php?resultid=573239
                                                <file_xfer_error>
                                                <file_name>1FAB_BOINC_MFR_ABRELAX_2143_43_3_0</file_name>
                                                <error_code>-161</error_code>
                                                </file_xfer_error>

                                                Keith T.
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                                                Message 3251 - Posted 28 Jun 2007 17:44:53 UTC - in response to Message 3248.

                                                  I just had 5.70 crash on one of my machines. What is worse, it brought up a dialog box indicating a thrown and uncaught exception. This dialog box effectively stopped BOINC. All exceptions should be caught at the topmost level, and used to generate an error message that is sent back to the project.


                                                  I had one of these too with 1otf__BOINC_SYMM_FOLD_AND_DOCK-1otf_-foldanddock__2186_3_0.


                                                  ____________

                                                  Profile Conan
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                                                  Message 3258 - Posted 30 Jun 2007 13:33:09 UTC

                                                    Last modified: 30 Jun 2007 13:33:53 UTC

                                                    Had 3 fail, each for a different reason

                                                    code -161 transfer error (completed 35 decoys)
                                                    exit code -1073741819 Unhandled Exception Error
                                                    code -119 Download Error

                                                    Hope this helps

                                                    ____________

                                                    Profile anders n

                                                    Joined: Feb 16 06
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                                                    Message 3263 - Posted 2 Jul 2007 6:17:43 UTC

                                                      wu error - exit code 1 (0x1)

                                                      I happend to be looking at grafics when it went wrong.

                                                      It suddenly went to model 0 (maybe 1) step 0 and then exit.

                                                      Anders n

                                                      ____________

                                                      Profile feet1st

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                                                      Message 4150 - Posted 26 Jun 2008 15:27:15 UTC

                                                        t405 got hung up on Win/XP. BOINC showed about 90 min of runtime, task manager showed no CPU going to the task. Exited and restart BOINC. Now the task shows more then 6hrs in to a 24 hours runtime preference. So, it would seem BOINC lost track of it several hours before it stopped getting actual CPU time.

                                                        Seems to be running normally at the moment.
                                                        ____________

                                                        Message boards : RALPH@home bug list : Bug reports for 5.69-5.70


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