Bug reports for 5.69-5.70

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Rhiju
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Message 3219 - Posted: 24 Jun 2007, 22:51:28 UTC

Thanks for continuing to post problems...
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j2satx

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Message 3220 - Posted: 25 Jun 2007, 2:06:20 UTC

Result ID 565131
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2158_1_0
Workunit 500452
Created 24 Jun 2007 23:20:48 UTC
Sent 24 Jun 2007 23:38:55 UTC
Received 25 Jun 2007 1:57:22 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 8761
Report deadline 28 Jun 2007 23:38:55 UTC
CPU time 2.234375
stderr out

<core_client_version>5.10.8</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 7200
ERROR:: Exit from: .\\pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0.00912644627413973
Granted credit 0
application version 5.69
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Message 3227 - Posted: 25 Jun 2007, 16:49:20 UTC

Result ID 565964
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_14_0
Workunit 501227
Created 25 Jun 2007 3:32:16 UTC
Sent 25 Jun 2007 4:43:14 UTC
Received 25 Jun 2007 4:47:22 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7180
Report deadline 29 Jun 2007 4:43:14 UTC
CPU time 2.936183
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0.0055551920526446
Granted credit 0
application version 5.69
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j2satx

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Message 3228 - Posted: 25 Jun 2007, 16:50:20 UTC

Result ID 565493
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_7_0
Workunit 500798
Created 25 Jun 2007 0:51:25 UTC
Sent 25 Jun 2007 1:22:21 UTC
Received 25 Jun 2007 2:36:27 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7180
Report deadline 29 Jun 2007 1:22:21 UTC
CPU time 1
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0.00189197745939017
Granted credit 0
application version 5.69
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j2satx

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Message 3229 - Posted: 25 Jun 2007, 16:51:03 UTC

Result ID 566072
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
Workunit 500961
Created 25 Jun 2007 4:05:10 UTC
Sent 25 Jun 2007 4:47:22 UTC
Received 25 Jun 2007 8:41:02 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7180
Report deadline 29 Jun 2007 4:47:22 UTC
CPU time 0
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0
Granted credit 0
application version 5.69
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Rhiju
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Message 3230 - Posted: 25 Jun 2007, 19:04:22 UTC - in response to Message 3229.  

Hi: Thanks, I figured out the problem with this WU!


Result ID 566072
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
Workunit 500961
Created 25 Jun 2007 4:05:10 UTC
Sent 25 Jun 2007 4:47:22 UTC
Received 25 Jun 2007 8:41:02 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7180
Report deadline 29 Jun 2007 4:47:22 UTC
CPU time 0
stderr out

5.10.2

process exited with code 1 (0x1, -255)


Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769


]]>

Validate state Invalid
Claimed credit 0
Granted credit 0
application version 5.69


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j2satx

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Message 3231 - Posted: 25 Jun 2007, 20:08:19 UTC - in response to Message 3230.  

Hi: Thanks, I figured out the problem with this WU!


Result ID 566072
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_RNA_ABINITIO-1csl_-_2156_10_1
Workunit 500961
Created 25 Jun 2007 4:05:10 UTC
Sent 25 Jun 2007 4:47:22 UTC
Received 25 Jun 2007 8:41:02 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7180
Report deadline 29 Jun 2007 4:47:22 UTC
CPU time 0
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0
Granted credit 0
application version 5.69



Is it the WU or 5.69?

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Profile iwi
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Message 3232 - Posted: 25 Jun 2007, 21:46:15 UTC
Last modified: 25 Jun 2007, 22:03:52 UTC

compute error, but for 5.68 - my mistake, not this bug list.

http://ralph.bakerlab.org/result.php?resultid=564845
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j2satx

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Message 3233 - Posted: 26 Jun 2007, 4:01:34 UTC

Result ID 566748
Name 1csl__BOINC_EXCLUDENB_PERMITZERO_FIXAXIS_RNA_ABINITIO-1csl_-_2157_12_1
Workunit 501103
Created 25 Jun 2007 8:38:13 UTC
Sent 25 Jun 2007 9:03:44 UTC
Received 26 Jun 2007 0:28:39 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
Computer ID 7181
Report deadline 29 Jun 2007 9:03:44 UTC
CPU time 0
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
ERROR:: Exit from: pose.cc line: 769

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0
Granted credit 0
application version 5.69
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Message 3234 - Posted: 26 Jun 2007, 6:02:19 UTC
Last modified: 26 Jun 2007, 6:03:34 UTC

This Wu failed after trying to restart from last checkpoint.

(I update BOINC so it was taken out of memory)

http://ralph.bakerlab.org/result.php?resultid=569191

Anders n
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Rhiju
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Message 3235 - Posted: 26 Jun 2007, 6:51:42 UTC - in response to Message 3234.  

Great, that\'s what I was hoping for actually. We\'re testing a mode of ralph in which we can run an old app version and a new app version at the same time. This is to allow some of our workunits to continue with a stable version to enable consistent results for publication, while other workunits can take advantage of later bug fixes and features. That workunit has a checkpointing issue with 5.68, but works well with 5.69 (now 5.70); I wanted to make sure I could send out one batch of jobs for the old app and one for the newer app!


This Wu failed after trying to restart from last checkpoint.

(I update BOINC so it was taken out of memory)

http://ralph.bakerlab.org/result.php?resultid=569191

Anders n


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Message 3236 - Posted: 26 Jun 2007, 6:57:57 UTC - in response to Message 3235.  

Just for Info this Wu was restarted at the same time and continued as usual.

http://ralph.bakerlab.org/result.php?resultid=569051




Great, that\'s what I was hoping for actually. We\'re testing a mode of ralph in which we can run an old app version and a new app version at the same time. This is to allow some of our workunits to continue with a stable version to enable consistent results for publication, while other workunits can take advantage of later bug fixes and features. That workunit has a checkpointing issue with 5.68, but works well with 5.69 (now 5.70); I wanted to make sure I could send out one batch of jobs for the old app and one for the newer app!


This Wu failed after trying to restart from last checkpoint.

(I update BOINC so it was taken out of memory)

http://ralph.bakerlab.org/result.php?resultid=569191

Anders n



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Message 3237 - Posted: 27 Jun 2007, 4:15:19 UTC

It seem the <error_code>-161</error_code>
from 5.68 is still here.
http://ralph.bakerlab.org/workunit.php?wuid=499558

Anders n
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Message 3239 - Posted: 27 Jun 2007, 9:48:17 UTC - in response to Message 3237.  

1 more
2007-06-27 11:35:41|ralph@home|Reason: Unrecoverable error for result SSH1_BOINC_MFR_ABRELAX_2150_47_1 (<file_xfer_error> <file_name>SSH1_BOINC_MFR_ABRELAX_2150_47_1_0</file_name> <error_code>-161</error_code></file_xfer_error>)

http://ralph.bakerlab.org/workunit.php?wuid=499792

It seem the <error_code>-161</error_code>
from 5.68 is still here.
http://ralph.bakerlab.org/workunit.php?wuid=499558

Anders n


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Message 3240 - Posted: 28 Jun 2007, 7:43:30 UTC

> Had this WU lock up for maybe 1 hour 33 minutes at least (shows 10 minutes in Boinc), going on the other Ralph WU that came in after this one.
I suspended then resumed the Work Unit and it went straight to Computational error.

This WU
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Message 3243 - Posted: 28 Jun 2007, 10:02:44 UTC

Not a bug but some of the lates Wu-s are huge and take up to 600 in VM.

Anders n
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j2satx

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Message 3244 - Posted: 28 Jun 2007, 12:20:40 UTC

Result ID 573207
Name 1tol_BOINC_MFR_ABRELAX_2152_27_3
Workunit 499578
Created 27 Jun 2007 12:08:48 UTC
Sent 27 Jun 2007 12:08:50 UTC
Received 28 Jun 2007 3:46:52 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 0 (0x0)
Computer ID 7012
Report deadline 1 Jul 2007 12:08:50 UTC
CPU time 6771.143169
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
# random seed: 2604966
======================================================
DONE :: 1 starting structures 6770.14 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================


BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...

</stderr_txt>
<message>
<file_xfer_error>
<file_name>1tol_BOINC_MFR_ABRELAX_2152_27_3_0</file_name>
<error_code>-161</error_code>
</file_xfer_error>

</message>
]]>

Validate state Invalid
Claimed credit 19.665808052477
Granted credit 0
application version 5.70
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Message 3245 - Posted: 28 Jun 2007, 12:22:14 UTC

Result ID 573538
Name 1wrp__BOINC_SYMM_FOLD_AND_DOCK-1wrp_-foldanddock__2185_8_0
Workunit 508020
Created 28 Jun 2007 4:55:27 UTC
Sent 28 Jun 2007 5:02:08 UTC
Received 28 Jun 2007 10:51:37 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)
Computer ID 7012
Report deadline 2 Jul 2007 5:02:08 UTC
CPU time 5
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
# random seed: 2524905
SIGSEGV: segmentation violation
Stack trace (12 frames):
[0x8cf2edb]
[0x8cedd0c]
[0xffffe420]
[0x804e052]
[0x88f3960]
[0x88f8ff6]
[0x8937f94]
[0x85c799e]
[0x86f62b6]
[0x86f63d6]
[0x8d56dd4]
[0x8048111]

Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0.0145217783479398
Granted credit 0
application version 5.70
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Message 3246 - Posted: 28 Jun 2007, 12:22:45 UTC

Result ID 573553
Name 1wrp__BOINC_SYMM_FOLD_AND_DOCK-1wrp_-foldanddock__2186_8_0
Workunit 508035
Created 28 Jun 2007 4:55:27 UTC
Sent 28 Jun 2007 5:06:17 UTC
Received 28 Jun 2007 10:51:37 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)
Computer ID 7012
Report deadline 2 Jul 2007 5:06:17 UTC
CPU time 4
stderr out

<core_client_version>5.10.2</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 7200
# random seed: 2524755
SIGSEGV: segmentation violation
Stack trace (12 frames):
[0x8cf2edb]
[0x8cedd0c]
[0xffffe420]
[0x804e052]
[0x88f3960]
[0x88f8ff6]
[0x8937f94]
[0x85c799e]
[0x86f62b6]
[0x86f63d6]
[0x8d56dd4]
[0x8048111]

Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 0.0116174226783518
Granted credit 0
application version 5.70
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Message 3247 - Posted: 28 Jun 2007, 14:05:58 UTC

A compute error for result 573807.
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