Bug reports for 5.72-5.76

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Rhiju
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Message 3290 - Posted: 22 Jul 2007, 21:53:45 UTC

Thanks for continuing to post... things have overall been pretty quiet, and ralph has been chugging along great. This might be our last update before we update the real rosetta@home app, so I\'m hoping that this looks good!
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Message 3292 - Posted: 31 Jul 2007, 10:25:33 UTC
Last modified: 31 Jul 2007, 10:28:49 UTC

> Here is one that died
This One

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 21600
ERROR:: Unable to determine sequence length from pdb file
ERROR:: Exit from: pose.cc line: 1929
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Message 3299 - Posted: 3 Aug 2007, 11:25:27 UTC
Last modified: 3 Aug 2007, 11:26:27 UTC

Two that have failed with the same error
This one
And this one

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 21600
# random seed: 2188369
SIGSEGV: segmentation violation
Stack trace (13 frames):
[0x8d3c25b]
[0x8d3708c]
[0xb7f36420]
[0x8c904f4]
[0x8978b52]
[0x891f51f]
[0x89200d1]
[0x895e9a0]
[0x85ed69e]
[0x871c866]
[0x871c986]
[0x8da0154]
[0x8048111]

Exiting...

</stderr_txt>
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Profile Tomislaw

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Message 3300 - Posted: 4 Aug 2007, 4:37:57 UTC

Client/Compute error
599457
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Message 3301 - Posted: 4 Aug 2007, 8:20:01 UTC - in response to Message 3299.  

Two that have failed with the same error
This one
And this one

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 21600
# random seed: 2188369
SIGSEGV: segmentation violation
Stack trace (13 frames):
[0x8d3c25b]
[0x8d3708c]
[0xb7f36420]
[0x8c904f4]
[0x8978b52]
[0x891f51f]
[0x89200d1]
[0x895e9a0]
[0x85ed69e]
[0x871c866]
[0x871c986]
[0x8da0154]
[0x8048111]

Exiting...

</stderr_txt>


> Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
600557

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Message 3303 - Posted: 5 Aug 2007, 6:29:09 UTC

3 more, these ones on a Windows machine

1i8f type WU

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\hbonds.cc line: 651

calbindin_BOINC_MFR type WU
MFR type WU

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\fragments.cc line: 769




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Message 3305 - Posted: 6 Aug 2007, 13:54:04 UTC - in response to Message 3303.  

3 more, these ones on a Windows machine

1i8f type WU

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\hbonds.cc line: 651

calbindin_BOINC_MFR type WU
MFR type WU

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\fragments.cc line: 769




Here is another MFR with same fault
MFR type WU

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Rhiju
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Message 3306 - Posted: 7 Aug 2007, 5:19:51 UTC - in response to Message 3305.  

Thanks we noted these, and they\'ll be tested again on ralph with a fix before getting sent out to Rosetta@home.

3 more, these ones on a Windows machine

1i8f type WU

5.8.15

Incorrect function. (0x1) - exit code 1 (0x1)


# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\hbonds.cc line: 651

calbindin_BOINC_MFR type WU
MFR type WU

5.8.15

Incorrect function. (0x1) - exit code 1 (0x1)


# cpu_run_time_pref: 21600
# random seed: 2188650
ERROR:: Exit from: .\\fragments.cc line: 769




Here is another MFR with same fault
MFR type WU


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Message 3310 - Posted: 8 Aug 2007, 5:12:35 UTC - in response to Message 3301.  

Two that have failed with the same error
This one
And this one



> Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
600557


Just a \'me too\' post :-)
Boinc 5.8.15, Ralph 5.73, Workunit 531614, Result 599889, OS Linux 32-bit.
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Message 3312 - Posted: 8 Aug 2007, 21:31:37 UTC - in response to Message 3310.  

Thanks, we\'re not going to send those out to Rosetta@home!

Two that have failed with the same error
This one
And this one



> Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
600557


Just a \'me too\' post :-)
Boinc 5.8.15, Ralph 5.73, Workunit 531614, Result 599889, OS Linux 32-bit.


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Message 3313 - Posted: 9 Aug 2007, 17:53:39 UTC
Last modified: 9 Aug 2007, 18:16:27 UTC

In this type of vu \"157d__BOINC_MINIMIZE_NOFLAGS_RNA_ABINITIO-157d_-_2295_834_0\" the steps, accepted energi and accepted RMSD does not change after about 5500 steps in each model. But you can se the grafics move and the new dots comming in the right corner.

Anders n

Edit I think that can lead to that the wu\'s error out on heartbeat for slow computers.
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Message 3314 - Posted: 11 Aug 2007, 7:56:25 UTC - in response to Message 3313.  
Last modified: 11 Aug 2007, 7:56:36 UTC

Hmm, I didn\'t think about the heartbeart or watchdog issue. Good point. So far I haven\'t seen any early exit due to that problem, but I\'ll keep an eye out for it!

In this type of vu \"157d__BOINC_MINIMIZE_NOFLAGS_RNA_ABINITIO-157d_-_2295_834_0\" the steps, accepted energi and accepted RMSD does not change after about 5500 steps in each model. But you can se the grafics move and the new dots comming in the right corner.

Anders n

Edit I think that can lead to that the wu\'s error out on heartbeat for slow computers.


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Message 3315 - Posted: 11 Aug 2007, 12:26:58 UTC
Last modified: 11 Aug 2007, 12:37:10 UTC

Here is one.

Edit any info on the new apps?
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Message 3319 - Posted: 12 Aug 2007, 20:34:20 UTC - in response to Message 3315.  
Last modified: 12 Aug 2007, 20:35:06 UTC

Hi: Yea, I was putting up info on new apps when ralph crashed for a few hours -- putting up some updates now.

Also, thanks for the post of a job that\'s going on too long for the watchdog.


Here is one.

Edit any info on the new apps?


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Message 3324 - Posted: 17 Aug 2007, 11:27:46 UTC - in response to Message 3319.  

Hi,
Just aborted LFAB__BOINC_TOP5CHEAT_MFRPICKEDJUMPRELAX_BARCODE-LFAB_-_2328_3 after seven hours with 11 more to go. It didn\'t appear to be getting out of the INITIALIZATION stage.
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Message 3325 - Posted: 17 Aug 2007, 19:41:54 UTC
Last modified: 17 Aug 2007, 19:50:51 UTC

Error \"Unable to determine sequence length from pdb file\" on this MFR_ABRELAX_CONTROL

Anders n
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Message 3326 - Posted: 17 Aug 2007, 21:02:32 UTC
Last modified: 17 Aug 2007, 21:03:58 UTC

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Message 3327 - Posted: 18 Aug 2007, 7:13:17 UTC

Here are 2 MFR_ABRELAX WU\'s that have failed on a Windows machine

614691
614785

<core_client_version>5.8.15</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
# cpu_run_time_pref: 21600
ERROR:: Unable to determine sequence length from pdb file
ERROR:: Exit from: .\\pose.cc line: 1929
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Message 3328 - Posted: 18 Aug 2007, 13:54:57 UTC
Last modified: 18 Aug 2007, 13:57:13 UTC

application version 5.76
MFR_ABRELAX
Problems with this series of wus on Linux:
wu - 545712
wu - 545513

core_client_version>5.10.10</core_client_version>
<message>
process exited with code 1 (0x1, -255)
</message>
<stderr_txt>
ERROR:: Unable to determine sequence length from pdb file
ERROR:: Exit from: pose.cc line: 1929
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