RALPH@home

Bug reports for 5.72-5.76

  UW Seal
 
[ Home ] [ Join ] [ About ] [ Participants ] [ Community ] [ Statistics ]
  [ login/out ]


Advanced search

Message boards : RALPH@home bug list : Bug reports for 5.72-5.76

AuthorMessage
Rhiju
Forum moderator
Project developer
Project scientist

Joined: Feb 14 06
Posts: 161
ID: 4
Credit: 3,725
RAC: 0
Message 3290 - Posted 22 Jul 2007 21:53:45 UTC

    Thanks for continuing to post... things have overall been pretty quiet, and ralph has been chugging along great. This might be our last update before we update the real rosetta@home app, so I\'m hoping that this looks good!
    ____________

    Profile Conan
    Avatar

    Joined: Feb 16 06
    Posts: 344
    ID: 145
    Credit: 1,309,534
    RAC: 0
    Message 3292 - Posted 31 Jul 2007 10:25:33 UTC

      Last modified: 31 Jul 2007 10:28:49 UTC

      > Here is one that died
      This One

      <core_client_version>5.8.16</core_client_version>
      <![CDATA[
      <message>
      process exited with code 1 (0x1)
      </message>
      <stderr_txt>
      Graphics are disabled due to configuration...
      # cpu_run_time_pref: 21600
      ERROR:: Unable to determine sequence length from pdb file
      ERROR:: Exit from: pose.cc line: 1929
      ____________

      Profile Conan
      Avatar

      Joined: Feb 16 06
      Posts: 344
      ID: 145
      Credit: 1,309,534
      RAC: 0
      Message 3299 - Posted 3 Aug 2007 11:25:27 UTC

        Last modified: 3 Aug 2007 11:26:27 UTC

        Two that have failed with the same error
        This one
        And this one

        <core_client_version>5.8.16</core_client_version>
        <![CDATA[
        <message>
        process exited with code 193 (0xc1)
        </message>
        <stderr_txt>
        Graphics are disabled due to configuration...
        # cpu_run_time_pref: 21600
        # random seed: 2188369
        SIGSEGV: segmentation violation
        Stack trace (13 frames):
        [0x8d3c25b]
        [0x8d3708c]
        [0xb7f36420]
        [0x8c904f4]
        [0x8978b52]
        [0x891f51f]
        [0x89200d1]
        [0x895e9a0]
        [0x85ed69e]
        [0x871c866]
        [0x871c986]
        [0x8da0154]
        [0x8048111]

        Exiting...

        </stderr_txt>
        ____________

        Profile Tomislaw

        Joined: Dec 11 06
        Posts: 1
        ID: 2360
        Credit: 272,204
        RAC: 0
        Message 3300 - Posted 4 Aug 2007 4:37:57 UTC

          Client/Compute error
          599457

          Profile Conan
          Avatar

          Joined: Feb 16 06
          Posts: 344
          ID: 145
          Credit: 1,309,534
          RAC: 0
          Message 3301 - Posted 4 Aug 2007 8:20:01 UTC - in response to Message 3299.

            Two that have failed with the same error
            This one
            And this one

            <core_client_version>5.8.16</core_client_version>
            <![CDATA[
            <message>
            process exited with code 193 (0xc1)
            </message>
            <stderr_txt>
            Graphics are disabled due to configuration...
            # cpu_run_time_pref: 21600
            # random seed: 2188369
            SIGSEGV: segmentation violation
            Stack trace (13 frames):
            [0x8d3c25b]
            [0x8d3708c]
            [0xb7f36420]
            [0x8c904f4]
            [0x8978b52]
            [0x891f51f]
            [0x89200d1]
            [0x895e9a0]
            [0x85ed69e]
            [0x871c866]
            [0x871c986]
            [0x8da0154]
            [0x8048111]

            Exiting...

            </stderr_txt>


            > Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
            600557

            ____________

            Profile Conan
            Avatar

            Joined: Feb 16 06
            Posts: 344
            ID: 145
            Credit: 1,309,534
            RAC: 0
            Message 3303 - Posted 5 Aug 2007 6:29:09 UTC

              3 more, these ones on a Windows machine

              1i8f type WU

              <core_client_version>5.8.15</core_client_version>
              <![CDATA[
              <message>
              Incorrect function. (0x1) - exit code 1 (0x1)
              </message>
              <stderr_txt>
              # cpu_run_time_pref: 21600
              # random seed: 2188650
              ERROR:: Exit from: .\\hbonds.cc line: 651

              calbindin_BOINC_MFR type WU
              MFR type WU

              <core_client_version>5.8.15</core_client_version>
              <![CDATA[
              <message>
              Incorrect function. (0x1) - exit code 1 (0x1)
              </message>
              <stderr_txt>
              # cpu_run_time_pref: 21600
              # random seed: 2188650
              ERROR:: Exit from: .\\fragments.cc line: 769




              ____________

              Profile Conan
              Avatar

              Joined: Feb 16 06
              Posts: 344
              ID: 145
              Credit: 1,309,534
              RAC: 0
              Message 3305 - Posted 6 Aug 2007 13:54:04 UTC - in response to Message 3303.

                3 more, these ones on a Windows machine

                1i8f type WU

                <core_client_version>5.8.15</core_client_version>
                <![CDATA[
                <message>
                Incorrect function. (0x1) - exit code 1 (0x1)
                </message>
                <stderr_txt>
                # cpu_run_time_pref: 21600
                # random seed: 2188650
                ERROR:: Exit from: .\\hbonds.cc line: 651

                calbindin_BOINC_MFR type WU
                MFR type WU

                <core_client_version>5.8.15</core_client_version>
                <![CDATA[
                <message>
                Incorrect function. (0x1) - exit code 1 (0x1)
                </message>
                <stderr_txt>
                # cpu_run_time_pref: 21600
                # random seed: 2188650
                ERROR:: Exit from: .\\fragments.cc line: 769




                Here is another MFR with same fault
                MFR type WU

                ____________

                Rhiju
                Forum moderator
                Project developer
                Project scientist

                Joined: Feb 14 06
                Posts: 161
                ID: 4
                Credit: 3,725
                RAC: 0
                Message 3306 - Posted 7 Aug 2007 5:19:51 UTC - in response to Message 3305.

                  Thanks we noted these, and they\'ll be tested again on ralph with a fix before getting sent out to Rosetta@home.

                  3 more, these ones on a Windows machine

                  1i8f type WU

                  <core_client_version>5.8.15</core_client_version>
                  <![CDATA[
                  <message>
                  Incorrect function. (0x1) - exit code 1 (0x1)
                  </message>
                  <stderr_txt>
                  # cpu_run_time_pref: 21600
                  # random seed: 2188650
                  ERROR:: Exit from: .\\hbonds.cc line: 651

                  calbindin_BOINC_MFR type WU
                  MFR type WU

                  <core_client_version>5.8.15</core_client_version>
                  <![CDATA[
                  <message>
                  Incorrect function. (0x1) - exit code 1 (0x1)
                  </message>
                  <stderr_txt>
                  # cpu_run_time_pref: 21600
                  # random seed: 2188650
                  ERROR:: Exit from: .\\fragments.cc line: 769




                  Here is another MFR with same fault
                  MFR type WU


                  ____________

                  Thomas Leibold

                  Joined: Feb 25 07
                  Posts: 27
                  ID: 2684
                  Credit: 77,464
                  RAC: 0
                  Message 3310 - Posted 8 Aug 2007 5:12:35 UTC - in response to Message 3301.

                    Two that have failed with the same error
                    This one
                    And this one



                    > Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
                    600557


                    Just a \'me too\' post :-)
                    Boinc 5.8.15, Ralph 5.73, Workunit 531614, Result 599889, OS Linux 32-bit.

                    Rhiju
                    Forum moderator
                    Project developer
                    Project scientist

                    Joined: Feb 14 06
                    Posts: 161
                    ID: 4
                    Credit: 3,725
                    RAC: 0
                    Message 3312 - Posted 8 Aug 2007 21:31:37 UTC - in response to Message 3310.

                      Thanks, we\'re not going to send those out to Rosetta@home!

                      Two that have failed with the same error
                      This one
                      And this one



                      > Same fault and again it is the \"1vie\" type Work Unit, they ALL fail,
                      600557


                      Just a \'me too\' post :-)
                      Boinc 5.8.15, Ralph 5.73, Workunit 531614, Result 599889, OS Linux 32-bit.


                      ____________

                      Profile anders n

                      Joined: Feb 16 06
                      Posts: 166
                      ID: 91
                      Credit: 131,419
                      RAC: 0
                      Message 3313 - Posted 9 Aug 2007 17:53:39 UTC

                        Last modified: 9 Aug 2007 18:16:27 UTC

                        In this type of vu \"157d__BOINC_MINIMIZE_NOFLAGS_RNA_ABINITIO-157d_-_2295_834_0\" the steps, accepted energi and accepted RMSD does not change after about 5500 steps in each model. But you can se the grafics move and the new dots comming in the right corner.

                        Anders n

                        Edit I think that can lead to that the wu\'s error out on heartbeat for slow computers.
                        ____________

                        Rhiju
                        Forum moderator
                        Project developer
                        Project scientist

                        Joined: Feb 14 06
                        Posts: 161
                        ID: 4
                        Credit: 3,725
                        RAC: 0
                        Message 3314 - Posted 11 Aug 2007 7:56:25 UTC - in response to Message 3313.

                          Last modified: 11 Aug 2007 7:56:36 UTC

                          Hmm, I didn\'t think about the heartbeart or watchdog issue. Good point. So far I haven\'t seen any early exit due to that problem, but I\'ll keep an eye out for it!

                          In this type of vu \"157d__BOINC_MINIMIZE_NOFLAGS_RNA_ABINITIO-157d_-_2295_834_0\" the steps, accepted energi and accepted RMSD does not change after about 5500 steps in each model. But you can se the grafics move and the new dots comming in the right corner.

                          Anders n

                          Edit I think that can lead to that the wu\'s error out on heartbeat for slow computers.


                          ____________

                          Profile anders n

                          Joined: Feb 16 06
                          Posts: 166
                          ID: 91
                          Credit: 131,419
                          RAC: 0
                          Message 3315 - Posted 11 Aug 2007 12:26:58 UTC

                            Last modified: 11 Aug 2007 12:37:10 UTC

                            Here is one.

                            Edit any info on the new apps?
                            ____________

                            Rhiju
                            Forum moderator
                            Project developer
                            Project scientist

                            Joined: Feb 14 06
                            Posts: 161
                            ID: 4
                            Credit: 3,725
                            RAC: 0
                            Message 3319 - Posted 12 Aug 2007 20:34:20 UTC - in response to Message 3315.

                              Last modified: 12 Aug 2007 20:35:06 UTC

                              Hi: Yea, I was putting up info on new apps when ralph crashed for a few hours -- putting up some updates now.

                              Also, thanks for the post of a job that\'s going on too long for the watchdog.


                              Here is one.

                              Edit any info on the new apps?


                              ____________

                              tallguy-13088
                              Avatar

                              Joined: Feb 17 06
                              Posts: 10
                              ID: 376
                              Credit: 121,701
                              RAC: 0
                              Message 3324 - Posted 17 Aug 2007 11:27:46 UTC - in response to Message 3319.

                                Hi,
                                Just aborted LFAB__BOINC_TOP5CHEAT_MFRPICKEDJUMPRELAX_BARCODE-LFAB_-_2328_3 after seven hours with 11 more to go. It didn\'t appear to be getting out of the INITIALIZATION stage.
                                ____________

                                Profile anders n

                                Joined: Feb 16 06
                                Posts: 166
                                ID: 91
                                Credit: 131,419
                                RAC: 0
                                Message 3325 - Posted 17 Aug 2007 19:41:54 UTC

                                  Last modified: 17 Aug 2007 19:50:51 UTC

                                  Error \"Unable to determine sequence length from pdb file\" on this MFR_ABRELAX_CONTROL

                                  Anders n
                                  ____________

                                  [AF>EDLS>BIOMED] Heyoka

                                  Joined: Feb 16 06
                                  Posts: 2
                                  ID: 161
                                  Credit: 9,389
                                  RAC: 0
                                  Message 3326 - Posted 17 Aug 2007 21:02:32 UTC

                                    Last modified: 17 Aug 2007 21:03:58 UTC

                                    Unable to determine sequence length from pdb file : MFR_ABRELAX_PICKED_mrr16_200_2340_17_2

                                    http://ralph.bakerlab.org/workunit.php?wuid=545499
                                    ____________

                                    Profile Conan
                                    Avatar

                                    Joined: Feb 16 06
                                    Posts: 344
                                    ID: 145
                                    Credit: 1,309,534
                                    RAC: 0
                                    Message 3327 - Posted 18 Aug 2007 7:13:17 UTC

                                      Here are 2 MFR_ABRELAX WU\'s that have failed on a Windows machine

                                      614691
                                      614785

                                      <core_client_version>5.8.15</core_client_version>
                                      <![CDATA[
                                      <message>
                                      Incorrect function. (0x1) - exit code 1 (0x1)
                                      </message>
                                      <stderr_txt>
                                      # cpu_run_time_pref: 21600
                                      ERROR:: Unable to determine sequence length from pdb file
                                      ERROR:: Exit from: .\\pose.cc line: 1929
                                      ____________

                                      RAD-Poland

                                      Joined: Apr 6 07
                                      Posts: 6
                                      ID: 2897
                                      Credit: 100,029
                                      RAC: 0
                                      Message 3328 - Posted 18 Aug 2007 13:54:57 UTC

                                        Last modified: 18 Aug 2007 13:57:13 UTC

                                        application version 5.76
                                        MFR_ABRELAX
                                        Problems with this series of wus on Linux:
                                        wu - 545712
                                        wu - 545513

                                        core_client_version>5.10.10</core_client_version>
                                        <message>
                                        process exited with code 1 (0x1, -255)
                                        </message>
                                        <stderr_txt>
                                        ERROR:: Unable to determine sequence length from pdb file
                                        ERROR:: Exit from: pose.cc line: 1929

                                        Message boards : RALPH@home bug list : Bug reports for 5.72-5.76


                                        Home | Join | About | Participants | Community | Statistics

                                        Copyright © 2017 University of Washington

                                        Last Modified: 20 Nov 2008 19:41:56 UTC
                                        Back to top ^