minirosetta v1.25 bug thread

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James
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Message 4061 - Posted: 24 May 2008, 22:58:37 UTC

Please post bugs related to minirosetta v1.25 here. This version includes fixes to some of the errors identified with the v1.24 application, along with some new protocols that we\'re trying in CASP8.

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Message 4062 - Posted: 25 May 2008, 17:31:51 UTC

Success on 3/4 of the Mini 1.25 workunits I\'ve completed so far.

Here is the exception:

resultid=1015465

On the tasks that are successful, the stderr_txt block often contains rather dire looking warnings, frequently repeated an inordinate number of times.

CreateFile error 32 when trying set file time
seems quite popular, in one case repeating no less than 65 times in the same message.
RALPH and Rosie sittin' in a tree,
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Message 4067 - Posted: 26 May 2008, 13:12:09 UTC

This was interesting WU, completed valid, but stderr out is full of \"error writing\" message.

http://ralph.bakerlab.org/result.php?resultid=1016222
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Message 4071 - Posted: 26 May 2008, 15:44:09 UTC - in response to Message 4067.  
Last modified: 26 May 2008, 16:02:48 UTC

{...} but stderr out is full of \"error writing\" message.
{...}


I had one like that on Rosetta
t393_looprelax_round1_fullatom_relax_aaT0393_2I76A_8_0001_3559_429_1

It was a mini 1.24 application, mentioned here only because of the similar obscene profusion of the line: \"Error writing\"

BTW: I was the wingman on the task linked above. The original recipient had the same luck.
RALPH and Rosie sittin' in a tree,
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Message 4072 - Posted: 26 May 2008, 15:48:05 UTC

4 failed 1.25 units so far:

http://ralph.bakerlab.org/result.php?resultid=1016257
http://ralph.bakerlab.org/result.php?resultid=1016226
http://ralph.bakerlab.org/result.php?resultid=1016219
http://ralph.bakerlab.org/result.php?resultid=1016321

The error log on each looks about the same, here is the beginning snip of it:

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x004861A9 read attempt to address 0x0000000C

Engaging BOINC Windows Runtime Debugger...
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Message 4079 - Posted: 27 May 2008, 9:23:44 UTC

Task ID 1016748
Name casp8_manu_t396_lb0_aaT0396_1JR8A_8_0001_4056_1_0
Workunit 903099
Server state Over
Outcome Client error
Client state Compute error
Exit status 1 (0x1)
CPU time 29.78125
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2
9 10000
3 9
1 3

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157
called boinc_finish


</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.0841268804223367
Granted credit 0
application version 1.25

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