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minirosetta v1.26 bug thread

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Message boards : RALPH@home bug list : minirosetta v1.26 bug thread

AuthorMessage
James
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Project developer
Project scientist

Joined: Jun 22 06
Posts: 19
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Credit: 278
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Message 4075 - Posted 27 May 2008 0:35:48 UTC

    We\'re releasing version 1.26 of minirosetta that will hopefully fix the errors in the previous version:
    - improper reading of the psipred_ss2 file
    - problems serializing the Pose resulting in a long list of \"Error writing\" messages.

    Post bugs/issues here.
    ____________

    Profile KC0ISW

    Joined: Feb 17 06
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    Credit: 11,725
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    Message 4076 - Posted 27 May 2008 6:01:43 UTC

      Last modified: 27 May 2008 6:05:30 UTC

      One unit failed after 54 mins

      http://ralph.bakerlab.org/result.php?resultid=1016932

      still getting writing error
      ____________

      BigMike
      Avatar

      Joined: Feb 23 06
      Posts: 63
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      Credit: 58,730
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      Message 4077 - Posted 27 May 2008 6:36:54 UTC - in response to Message 4075.

        Last modified: 27 May 2008 6:44:57 UTC

        Unfortunately, my first 1.26 WU failed.

        <core_client_version>5.10.45</core_client_version>
        <![CDATA[
        <message>
        Incorrect function. (0x1) - exit code 1 (0x1)
        </message>
        <stderr_txt>
        fragment reading error -- pdb, chain and seqpos mismatch
        position: 66; neighbor: 187; line: 2

        ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
        ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157
        called boinc_finish

        </stderr_txt>
        ]]>

        ==Mike

        ____________
        Don't believe everything you think.

        BigMike
        Avatar

        Joined: Feb 23 06
        Posts: 63
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        Credit: 58,730
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        Message 4078 - Posted 27 May 2008 6:53:53 UTC

          Just had another one fail, this time on disk write errors.

          The message in the log is:
          5/26/2008 11:43:30 PM|ralph@home|Aborting task t393_lr_CASP8_round2_centroid_aaT0393_2I76A_10_0002_4059_2_0: exceeded disk limit: 97.71MB > 95.37MB

          But this doesn\'t make any sense. My free space is 33GB, and all my BOINC preferences are set in the 100GB range. 95.37MB is a garbage number.

          ==Mike

          ____________
          Don't believe everything you think.

          Profile KC0ISW

          Joined: Feb 17 06
          Posts: 20
          ID: 452
          Credit: 11,725
          RAC: 0
          Message 4080 - Posted 27 May 2008 11:53:13 UTC

            Last modified: 27 May 2008 11:57:54 UTC

            http://ralph.bakerlab.org/result.php?resultid=1017012

            <core_client_version>6.3.1</core_client_version>
            <![CDATA[
            <message>
            - exit code -1073741819 (0xc0000005)
            </message>
            <stderr_txt>
            # cpu_run_time_pref: 86400
            # cpu_run_time_pref: 86400


            Unhandled Exception Detected...

            - Unhandled Exception Record -
            Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029

            Engaging BOINC Windows Runtime Debugger...



            ********************


            BOINC Windows Runtime Debugger Version 6.3.2


            Dump Timestamp : 05/27/08 03:04:52
            LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
            Loaded Library : dbghelp.dll
            LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
            LoadLibraryA( symsrv.dll ): GetLastError = 126
            LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
            LoadLibraryA( srcsrv.dll ): GetLastError = 126
            LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
            Loaded Library : version.dll
            Debugger Engine : 4.0.5.0
            Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\2;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :

            SymGetModuleInfo(): GetLastError = 87
            ModLoad: 00000000 00000000 ( Symbols Loaded)
            Linked PDB Filename :



            *** Dump of the Process Statistics: ***

            - I/O Operations Counters -
            Read: 6487, Write: 0, Other 2025

            - I/O Transfers Counters -
            Read: 0, Write: 578023, Other 0

            - Paged Pool Usage -
            QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
            QuotaNonPagedPoolUsage: 2440, QuotaPeakNonPagedPoolUsage: 3880

            - Virtual Memory Usage -
            VirtualSize: 94568448, PeakVirtualSize: 94572544

            - Pagefile Usage -
            PagefileUsage: 40837120, PeakPagefileUsage: 44445696

            - Working Set Size -
            WorkingSetSize: 43159552, PeakWorkingSetSize: 46694400, PageFaultCount: 9534797

            *** Dump of thread ID 3464 (state: Waiting): ***

            - Information -
            Status: Wait Reason: UserRequest, , Kernel Time: 701562496.000000, User Time: 66297032704.000000, Wait Time: 1851852.000000

            - Unhandled Exception Record -
            Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029

            - Registers -
            eax=00030021 ebx=00000000 ecx=00030021 edx=0012af9c esi=0012b0f0 edi=00000006
            eip=00472901 esp=0012adb0 ebp=0012b00c
            cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246

            - Callstack -
            ChildEBP RetAddr Args to Child
            0012b00c 00706814 0012b0e8 03314690 ffffffff 00000005 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00472901\'
            0012bc70 006f1af3 0012d4e8 28e5aa82 0012d4e8 02a0e9b0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00706814\'
            0012c878 006efd86 0012d4e8 0012c89c 28e5de8e 03314690 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006f1af3\'
            00000005 00000000 00000000 00000000 00000000 00000000 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006efd86\'

            *** Dump of thread ID 3732 (state: Waiting): ***

            - Information -
            Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851846.000000

            - Registers -
            eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70
            eip=7c90e4f4 esp=0121ff40 ebp=0121ff98
            cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

            - Callstack -
            ChildEBP RetAddr Args to Child
            0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
            0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
            0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\'

            *** Dump of thread ID 1112 (state: Waiting): ***

            - Information -
            Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851790.000000

            - Registers -
            eax=0211fe18 ebx=016c8f00 ecx=0211e72c edx=00000d2a esi=00000000 edi=0211fdf8
            eip=7c90e4f4 esp=0211fdc8 ebp=0211fe20
            cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

            - Callstack -
            ChildEBP RetAddr Args to Child
            0211fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
            0211fe30 006a4f64 000007d0 2ae6e842 0012d034 016c8f78 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
            7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
            8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


            *** Debug Message Dump ****


            *** Foreground Window Data ***
            Window Name :
            Window Class :
            Window Process ID: 0
            Window Thread ID : 0

            Exiting...

            </stderr_txt>
            ]]>


            ____________

            Profile KC0ISW

            Joined: Feb 17 06
            Posts: 20
            ID: 452
            Credit: 11,725
            RAC: 0
            Message 4081 - Posted 27 May 2008 11:54:37 UTC

              Last modified: 27 May 2008 12:01:13 UTC

              another writing error
              i left out writing error listed here because it very long.

              http://ralph.bakerlab.org/result.php?resultid=1017013

              BOINC Windows Runtime Debugger Version 6.3.2


              Dump Timestamp : 05/27/08 02:22:15
              LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
              Loaded Library : dbghelp.dll
              LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
              LoadLibraryA( symsrv.dll ): GetLastError = 126
              LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
              LoadLibraryA( srcsrv.dll ): GetLastError = 126
              LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
              Loaded Library : version.dll
              Debugger Engine : 4.0.5.0
              Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :

              SymGetModuleInfo(): GetLastError = 87
              ModLoad: 00000000 00000000 ( Symbols Loaded)
              Linked PDB Filename :



              *** Dump of the Process Statistics: ***

              - I/O Operations Counters -
              Read: 11954, Write: 0, Other 31997586

              - I/O Transfers Counters -
              Read: 0, Write: 469632, Other 0

              - Paged Pool Usage -
              QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
              QuotaNonPagedPoolUsage: 3160, QuotaPeakNonPagedPoolUsage: 4480

              - Virtual Memory Usage -
              VirtualSize: 394973184, PeakVirtualSize: 394973184

              - Pagefile Usage -
              PagefileUsage: 280711168, PeakPagefileUsage: 300519424

              - Working Set Size -
              WorkingSetSize: 284270592, PeakWorkingSetSize: 304054272, PageFaultCount: 5373456

              *** Dump of thread ID 3216 (state: Waiting): ***

              - Information -
              Status: Wait Reason: UserRequest, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688209.000000

              - Unhandled Exception Record -
              Reason: Breakpoint Encountered (0x80000003) at address 0x7C90120E

              - Registers -
              eax=00000000 ebx=00000000 ecx=007a5542 edx=0121613c esi=7c802446 edi=00000001
              eip=7c90120e esp=0121fb9c ebp=0121ffec
              cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000246

              - Callstack -
              ChildEBP RetAddr Args to Child
              0121ffec 00000000 0041add0 00000000 00000000 00000008 !DbgBreakPoint+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90120e\'

              *** Dump of thread ID 2636 (state: Running): ***

              - Information -
              Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4065312512.000000, User Time: 37497188352.000000, Wait Time: 1688209.000000

              - Registers -
              eax=0002d4b2 ebx=09caa2f8 ecx=0b3974a8 edx=00000004 esi=09cc8308 edi=09caa208
              eip=0052a234 esp=0012b958 ebp=0012b990
              cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206

              - Callstack -
              ChildEBP RetAddr Args to Child
              0012b990 00523dee 09caa2f8 09caa208 0b3974a8 0012b9e0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0052a234\'
              0012ba4c 004c59f3 0b29e740 0012c354 0012c000 0b3974a0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00523dee\'
              0b29e628 3fcced12 836d8d0f 3fc0275a 4e02de74 3fc7d74c !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'004c59f3\'
              a67dc6b9 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'3fcced12\'

              *** Dump of thread ID 3752 (state: Waiting): ***

              - Information -
              Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688168.000000

              - Registers -
              eax=1111fe18 ebx=0975f000 ecx=1111e72c edx=00000820 esi=00000000 edi=1111fdf8
              eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20
              cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

              - Callstack -
              ChildEBP RetAddr Args to Child
              1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
              1111fe30 006a4f64 000007d0 2abba863 0012bef0 0975f0f0 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
              7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
              8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


              *** Debug Message Dump ****


              *** Foreground Window Data ***
              Window Name :
              Window Class :
              Window Process ID: 0
              Window Thread ID : 0

              Exiting...

              </stderr_txt>
              ]]>

              ____________

              Profile KC0ISW

              Joined: Feb 17 06
              Posts: 20
              ID: 452
              Credit: 11,725
              RAC: 0
              Message 4082 - Posted 27 May 2008 11:55:56 UTC

                Last modified: 27 May 2008 12:00:35 UTC

                another writing error
                i left out writing error listed here because it very long.

                http://ralph.bakerlab.org/result.php?resultid=1017220

                BOINC Windows Runtime Debugger Version 6.3.2


                Dump Timestamp : 05/27/08 04:09:00
                LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
                Loaded Library : dbghelp.dll
                LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
                LoadLibraryA( symsrv.dll ): GetLastError = 126
                LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
                LoadLibraryA( srcsrv.dll ): GetLastError = 126
                LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
                Loaded Library : version.dll
                Debugger Engine : 4.0.5.0
                Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :

                SymGetModuleInfo(): GetLastError = 87
                ModLoad: 00000000 00000000 ( Symbols Loaded)
                Linked PDB Filename :



                *** Dump of the Process Statistics: ***

                - I/O Operations Counters -
                Read: 10103, Write: 0, Other 37367614

                - I/O Transfers Counters -
                Read: 0, Write: 306472, Other 0

                - Paged Pool Usage -
                QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
                QuotaNonPagedPoolUsage: 3080, QuotaPeakNonPagedPoolUsage: 4120

                - Virtual Memory Usage -
                VirtualSize: 372932608, PeakVirtualSize: 393134080

                - Pagefile Usage -
                PagefileUsage: 255254528, PeakPagefileUsage: 298041344

                - Working Set Size -
                WorkingSetSize: 258863104, PeakWorkingSetSize: 301559808, PageFaultCount: 11275904

                *** Dump of thread ID 3484 (state: Ready): ***

                - Information -
                Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4619531264.000000, User Time: 33662031872.000000, Wait Time: 2098134.000000

                - Unhandled Exception Record -
                Reason: Access Violation (0xc0000005) at address 0x402BC38E read attempt to address 0x402BC38E

                - Registers -
                eax=00fc771c ebx=0a5f47f8 ecx=0b4d6f70 edx=402bc38e esi=0b1e4d30 edi=0b1e4d34
                eip=402bc38e esp=0012c07c ebp=0b2bd314
                cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010257

                - Callstack -
                ChildEBP RetAddr Args to Child
                fffffffc 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'402bc38e\'

                *** Dump of thread ID 2300 (state: Waiting): ***

                - Information -
                Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098132.000000

                - Registers -
                eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70
                eip=7c90e4f4 esp=0121ff40 ebp=0121ff98
                cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

                - Callstack -
                ChildEBP RetAddr Args to Child
                0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
                0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
                0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\'

                *** Dump of thread ID 1048 (state: Waiting): ***

                - Information -
                Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098131.000000

                - Registers -
                eax=1111fe18 ebx=0975f500 ecx=1111e72c edx=00000771 esi=00000000 edi=1111fdf8
                eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20
                cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

                - Callstack -
                ChildEBP RetAddr Args to Child
                1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
                1111fe30 006a4f64 000007d0 4cba9745 0012bef0 0975f568 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
                7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
                8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


                *** Debug Message Dump ****


                *** Foreground Window Data ***
                Window Name :
                Window Class :
                Window Process ID: 0
                Window Thread ID : 0

                Exiting...

                </stderr_txt>
                ]]>

                ____________

                Profile nouqraz

                Joined: May 22 08
                Posts: 7
                ID: 4329
                Credit: 13,627
                RAC: 0
                Message 4083 - Posted 27 May 2008 12:41:41 UTC

                  Looks like the first mini 1.26 task I got failed:

                  [http://ralph.bakerlab.org/result.php?resultid=1017106

                  <core_client_version>5.10.45</core_client_version>
                  <![CDATA[
                  <message>
                  - exit code -1073741819 (0xc0000005)
                  </message>
                  <stderr_txt>


                  Unhandled Exception Detected...

                  - Unhandled Exception Record -
                  Reason: Access Violation (0xc0000005) at address 0x00486019 read attempt to address 0x0000000C

                  Engaging BOINC Windows Runtime Debugger...

                  Dr Who Fan
                  Avatar

                  Joined: Sep 2 06
                  Posts: 63
                  ID: 1787
                  Credit: 44,264
                  RAC: 16
                  Message 4084 - Posted 28 May 2008 6:21:10 UTC

                    Last modified: 28 May 2008 6:21:58 UTC

                    Task ID 1016915
                    Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0
                    Workunit 903223
                    Server state Over
                    Outcome Validate error
                    Client state Done
                    Exit status 0 (0x0)
                    Computer ID 12756
                    CPU time 7347.984
                    stderr out

                    <core_client_version>6.1.0</core_client_version>
                    <![CDATA[
                    <stderr_txt>
                    # cpu_run_time_pref: 7200
                    Error writing
                    ** THEN ANOTHER 4605 LINES OF \"Error writing\" ***
                    </stderr_txt>
                    ]]>

                    Validate state Invalid
                    Claimed credit 22.8747379626083
                    Granted credit 0
                    application version 1.26
                    ____________

                    Dr Who Fan
                    Avatar

                    Joined: Sep 2 06
                    Posts: 63
                    ID: 1787
                    Credit: 44,264
                    RAC: 16
                    Message 4085 - Posted 28 May 2008 6:37:54 UTC

                      This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it\'s error reporting and also crashed.

                      Task ID 1017033
                      Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1
                      Workunit 903210
                      Created 27 May 2008 4:47:19 UTC
                      Sent 27 May 2008 5:20:20 UTC
                      Received 28 May 2008 4:01:03 UTC
                      Server state Over
                      Outcome Client error
                      Client state Compute error
                      Exit status -1073741819 (0xffffffffc0000005)
                      Computer ID 12756
                      Report deadline 31 May 2008 5:20:20 UTC
                      CPU time 47.92188
                      stderr out

                      <core_client_version>6.1.0</core_client_version>
                      <![CDATA[
                      <message>
                      - exit code -1073741819 (0xc0000005)
                      </message>
                      <stderr_txt>


                      Unhandled Exception Detected...

                      - Unhandled Exception Record -
                      Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000

                      Engaging BOINC Windows Runtime Debugger...



                      ********************


                      BOINC Windows Runtime Debugger Version 6.3.2


                      Dump Timestamp : 05/27/08 22:56:12
                      Loaded Library : D:\\BOINC\\dbghelp.dll
                      Loaded Library : D:\\BOINC\\symsrv.dll
                      Loaded Library : D:\\BOINC\\srcsrv.dll
                      LoadLibraryA( D:\\BOINC\\version.dll ): GetLastError = 126
                      Loaded Library : version.dll
                      Debugger Engine : 4.0.5.0
                      Symbol Search Path: D:\\BOINC\\slots\\1;D:\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\TEMP\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\TEMP\\symbols*http://boinc.berkeley.edu/symstore


                      ModLoad: 00400000 004f2000 D:\\BOINC\\projects\\ralph.bakerlab.org\\minirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded)
                      Linked PDB Filename : C:\\cygwin\\home\\boinc\\boinc_build\\minirosetta\\minirosetta_1.26\\mini\\Visual Studio\\BoincRelease\\minirosetta_1.26_windows_intelx86.pdb

                      ...

                      *** Debug Message Dump ****


                      *** Foreground Window Data ***
                      Window Name :
                      Window Class :
                      Window Process ID: 0
                      Window Thread ID : 0

                      Exiting...

                      </stderr_txt>

                      ]]>

                      Validate state Invalid
                      Claimed credit 0.1491838370464
                      Granted credit 0
                      application version 1.26
                      ____________

                      Profile David Emigh
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                      Joined: Jan 6 08
                      Posts: 27
                      ID: 3934
                      Credit: 26,482
                      RAC: 0
                      Message 4087 - Posted 29 May 2008 4:50:58 UTC

                        This one errored out in a little over 17 seconds

                        resultid=1016809

                        My first mini 1.26
                        ____________
                        RALPH and Rosie sittin' in a tree,
                        F - O - L - D - I - N - G!

                        Profile Conan
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                        Joined: Feb 16 06
                        Posts: 344
                        ID: 145
                        Credit: 1,309,534
                        RAC: 0
                        Message 4088 - Posted 29 May 2008 12:00:45 UTC

                          Also had an access violation on one machine like the other testers here, as well as two other error types;

                          Maximum Disk Space Exceeded on this WU
                          and
                          SIGSEGV : Segmentation Violation on this WU
                          ____________

                          Profile David Emigh
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                          Joined: Jan 6 08
                          Posts: 27
                          ID: 3934
                          Credit: 26,482
                          RAC: 0
                          Message 4089 - Posted 29 May 2008 13:52:35 UTC

                            Last modified: 29 May 2008 14:04:42 UTC

                            Validate error at 2800+ seconds

                            resultid=1018498

                            1/3 on Mini 1.26 at this point. Which is to say, I have had one success.
                            ____________
                            RALPH and Rosie sittin' in a tree,
                            F - O - L - D - I - N - G!

                            Path7

                            Joined: Feb 11 08
                            Posts: 56
                            ID: 4036
                            Credit: 4,974
                            RAC: 0
                            Message 4090 - Posted 29 May 2008 16:40:30 UTC

                              Hello all,
                              Received a file x-fer error (error -161) on Result I.d. 1017608
                              Boinc 5.10.45. Os: Windows XP home SP3.

                              From Boinc:
                              29-May-2008 05:17:16 [ralph@home] Computation for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 finished
                              29-May-2008 05:17:16 [ralph@home] Output file
                              1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0_0 for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 absent

                              Have a nice day,
                              Path7.

                              Evan

                              Joined: Dec 23 07
                              Posts: 75
                              ID: 3893
                              Credit: 69,584
                              RAC: 0
                              Message 4091 - Posted 29 May 2008 22:09:30 UTC

                                validate error 1018986

                                the stderr text says Error writing.
                                I won\'t copy it here as it only takes about 135 screens give or take a few.

                                Pepo
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                                Joined: Sep 8 06
                                Posts: 104
                                ID: 1812
                                Credit: 36,890
                                RAC: 0
                                Message 4092 - Posted 30 May 2008 12:35:40 UTC - in response to Message 4077.

                                  Unfortunately, my first 1.26 WU failed.

                                  Incorrect function. (0x1) - exit code 1 (0x1)

                                  fragment reading error -- pdb, chain and seqpos mismatch
                                  position: 66; neighbor: 187; line: 2

                                  ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
                                  ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157

                                  The same outcome here:
                                  process exited with code 1 (0x1, -255)
                                  fragment reading error -- pdb, chain and seqpos mismatch
                                  position: 66; neighbor: 187; line: 2

                                  ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
                                  ERROR:: Exit from: src/core/io/pdb/pose_io.cc line: 157[/code]


                                  Peter

                                  Profile David Emigh
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                                  Joined: Jan 6 08
                                  Posts: 27
                                  ID: 3934
                                  Credit: 26,482
                                  RAC: 0
                                  Message 4094 - Posted 31 May 2008 12:34:23 UTC

                                    Last modified: 31 May 2008 12:40:01 UTC

                                    Validate error here at 3700+ seconds:

                                    2oq2a_14_BOINC_CASP8_LOOPRELAX-2oq2a_14-_4064_10_1

                                    The stderr_txt output consists of the painfully familiar many thousands of repetitions of the phrase \"Error writing

                                    At this point, I am 2/5 on mini 1.26
                                    ____________
                                    RALPH and Rosie sittin' in a tree,
                                    F - O - L - D - I - N - G!

                                    Thomas Leibold

                                    Joined: Feb 25 07
                                    Posts: 27
                                    ID: 2684
                                    Credit: 77,464
                                    RAC: 0
                                    Message 4099 - Posted 1 Jun 2008 23:15:09 UTC

                                      CASP8_t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_4062_1_1
                                      Workunit http://ralph.bakerlab.org/workunit.php?wuid=903281
                                      Crashed after about 10 seconds and has been stuck like this ever since. It is now overdue and boinc manager reports the workunit as \"Running, high priority\" (but not consuming any cpu time). I\'m going to abort it now.

                                      The same workunit also failed for two other users, but apparently didn\'t get stuck on their systems.

                                      I didn\'t see anything unusual in the stdout.txt file, lots of \'inflating ...\' messages followed by the line \'Starting watchdog ...\' and then silence.

                                      Contents of stderr.txt (note that crash occurred prior to reporting the cpu runtime preference):
                                      ::::::::::::::
                                      stderr.txt
                                      ::::::::::::::
                                      WARNING: Override of option -out:nstruct sets a different value
                                      SIGABRT: abort called
                                      Stack trace (19 frames):
                                      [0x87e0bcb]
                                      [0x880b110]
                                      [0xffffe420]
                                      [0x886dcd4]
                                      [0x8883553]
                                      [0x88885b9]
                                      [0x8888897]
                                      [0x8859221]
                                      [0x885acc9]
                                      [0x846d7de]
                                      [0x81e0b39]
                                      [0x846da2d]
                                      [0x847134b]
                                      [0x81d858e]
                                      [0x813ba92]
                                      [0x80803c4]
                                      [0x804bd84]
                                      [0x8866bdc]
                                      [0x8048111]

                                      Exiting...
                                      # cpu_run_time_pref: 14400

                                      Profile Conan
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                                      Joined: Feb 16 06
                                      Posts: 344
                                      ID: 145
                                      Credit: 1,309,534
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                                      Message 4100 - Posted 2 Jun 2008 11:54:08 UTC

                                        Hope you don\'t release this WU type for Rosetta if it\'s going to give such low credit.

                                        The WU ran for over 16,000 seconds,
                                        producing 1 decoy,
                                        for this effort I was granted 4.33 credits,
                                        or 0.9 credits an hour.

                                        That\'s pretty (piss) poor in anyones book.
                                        ____________

                                        Dotsch
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                                        Message 4102 - Posted 3 Jun 2008 17:59:24 UTC

                                          I\'ve the problem, that the screensaver did not work on MacOS Intel. The show graphics via the BOINC manager works.
                                          ____________

                                          Profile nouqraz

                                          Joined: May 22 08
                                          Posts: 7
                                          ID: 4329
                                          Credit: 13,627
                                          RAC: 0
                                          Message 4104 - Posted 7 Jun 2008 1:20:32 UTC

                                            Four more that used no CPU time, despite saying that they were \'running\' and then after the report date approached/passed said \'running, high priority\'. BOINC eventually ended them.

                                            http://ralph.bakerlab.org/result.php?resultid=1018875
                                            http://ralph.bakerlab.org/result.php?resultid=1017917
                                            http://ralph.bakerlab.org/result.php?resultid=1017605
                                            http://ralph.bakerlab.org/result.php?resultid=1023410


                                            The same quad core client machine currently has another batch of 4 mini 1.26 tasks that are \'running\' but not using any CPU time. All 4 have also passed their report deadline. Waiting on BOINC to give up on them and cancel... so I can get 4 more tasks that won\'t use any CPU time...

                                            Message boards : RALPH@home bug list : minirosetta v1.26 bug thread


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