minirosetta v1.26 bug thread

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James
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Message 4075 - Posted: 27 May 2008, 0:35:48 UTC

We\'re releasing version 1.26 of minirosetta that will hopefully fix the errors in the previous version:
- improper reading of the psipred_ss2 file
- problems serializing the Pose resulting in a long list of \"Error writing\" messages.

Post bugs/issues here.
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Message 4076 - Posted: 27 May 2008, 6:01:43 UTC
Last modified: 27 May 2008, 6:05:30 UTC

One unit failed after 54 mins

http://ralph.bakerlab.org/result.php?resultid=1016932

still getting writing error
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Message 4077 - Posted: 27 May 2008, 6:36:54 UTC - in response to Message 4075.  
Last modified: 27 May 2008, 6:44:57 UTC

Unfortunately, my first 1.26 WU failed.

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157
called boinc_finish

</stderr_txt>
]]>

==Mike

Don't believe everything you think.
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Message 4078 - Posted: 27 May 2008, 6:53:53 UTC

Just had another one fail, this time on disk write errors.

The message in the log is:
5/26/2008 11:43:30 PM|ralph@home|Aborting task t393_lr_CASP8_round2_centroid_aaT0393_2I76A_10_0002_4059_2_0: exceeded disk limit: 97.71MB > 95.37MB

But this doesn\'t make any sense. My free space is 33GB, and all my BOINC preferences are set in the 100GB range. 95.37MB is a garbage number.

==Mike

Don't believe everything you think.
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Message 4080 - Posted: 27 May 2008, 11:53:13 UTC
Last modified: 27 May 2008, 11:57:54 UTC

http://ralph.bakerlab.org/result.php?resultid=1017012

<core_client_version>6.3.1</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>
# cpu_run_time_pref: 86400
# cpu_run_time_pref: 86400


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 03:04:52
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
Loaded Library : dbghelp.dll
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\2;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 6487, Write: 0, Other 2025

- I/O Transfers Counters -
Read: 0, Write: 578023, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
QuotaNonPagedPoolUsage: 2440, QuotaPeakNonPagedPoolUsage: 3880

- Virtual Memory Usage -
VirtualSize: 94568448, PeakVirtualSize: 94572544

- Pagefile Usage -
PagefileUsage: 40837120, PeakPagefileUsage: 44445696

- Working Set Size -
WorkingSetSize: 43159552, PeakWorkingSetSize: 46694400, PageFaultCount: 9534797

*** Dump of thread ID 3464 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 701562496.000000, User Time: 66297032704.000000, Wait Time: 1851852.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029

- Registers -
eax=00030021 ebx=00000000 ecx=00030021 edx=0012af9c esi=0012b0f0 edi=00000006
eip=00472901 esp=0012adb0 ebp=0012b00c
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246

- Callstack -
ChildEBP RetAddr Args to Child
0012b00c 00706814 0012b0e8 03314690 ffffffff 00000005 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00472901\'
0012bc70 006f1af3 0012d4e8 28e5aa82 0012d4e8 02a0e9b0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00706814\'
0012c878 006efd86 0012d4e8 0012c89c 28e5de8e 03314690 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006f1af3\'
00000005 00000000 00000000 00000000 00000000 00000000 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006efd86\'

*** Dump of thread ID 3732 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851846.000000

- Registers -
eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70
eip=7c90e4f4 esp=0121ff40 ebp=0121ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\'

*** Dump of thread ID 1112 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851790.000000

- Registers -
eax=0211fe18 ebx=016c8f00 ecx=0211e72c edx=00000d2a esi=00000000 edi=0211fdf8
eip=7c90e4f4 esp=0211fdc8 ebp=0211fe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0211fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
0211fe30 006a4f64 000007d0 2ae6e842 0012d034 016c8f78 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>


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Message 4081 - Posted: 27 May 2008, 11:54:37 UTC
Last modified: 27 May 2008, 12:01:13 UTC

another writing error
i left out writing error listed here because it very long.

http://ralph.bakerlab.org/result.php?resultid=1017013

BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 02:22:15
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
Loaded Library : dbghelp.dll
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 11954, Write: 0, Other 31997586

- I/O Transfers Counters -
Read: 0, Write: 469632, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
QuotaNonPagedPoolUsage: 3160, QuotaPeakNonPagedPoolUsage: 4480

- Virtual Memory Usage -
VirtualSize: 394973184, PeakVirtualSize: 394973184

- Pagefile Usage -
PagefileUsage: 280711168, PeakPagefileUsage: 300519424

- Working Set Size -
WorkingSetSize: 284270592, PeakWorkingSetSize: 304054272, PageFaultCount: 5373456

*** Dump of thread ID 3216 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688209.000000

- Unhandled Exception Record -
Reason: Breakpoint Encountered (0x80000003) at address 0x7C90120E

- Registers -
eax=00000000 ebx=00000000 ecx=007a5542 edx=0121613c esi=7c802446 edi=00000001
eip=7c90120e esp=0121fb9c ebp=0121ffec
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000246

- Callstack -
ChildEBP RetAddr Args to Child
0121ffec 00000000 0041add0 00000000 00000000 00000008 !DbgBreakPoint+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90120e\'

*** Dump of thread ID 2636 (state: Running): ***

- Information -
Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4065312512.000000, User Time: 37497188352.000000, Wait Time: 1688209.000000

- Registers -
eax=0002d4b2 ebx=09caa2f8 ecx=0b3974a8 edx=00000004 esi=09cc8308 edi=09caa208
eip=0052a234 esp=0012b958 ebp=0012b990
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206

- Callstack -
ChildEBP RetAddr Args to Child
0012b990 00523dee 09caa2f8 09caa208 0b3974a8 0012b9e0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0052a234\'
0012ba4c 004c59f3 0b29e740 0012c354 0012c000 0b3974a0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00523dee\'
0b29e628 3fcced12 836d8d0f 3fc0275a 4e02de74 3fc7d74c !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'004c59f3\'
a67dc6b9 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'3fcced12\'

*** Dump of thread ID 3752 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688168.000000

- Registers -
eax=1111fe18 ebx=0975f000 ecx=1111e72c edx=00000820 esi=00000000 edi=1111fdf8
eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
1111fe30 006a4f64 000007d0 2abba863 0012bef0 0975f0f0 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>

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Message 4082 - Posted: 27 May 2008, 11:55:56 UTC
Last modified: 27 May 2008, 12:00:35 UTC

another writing error
i left out writing error listed here because it very long.

http://ralph.bakerlab.org/result.php?resultid=1017220

BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 04:09:00
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126
Loaded Library : dbghelp.dll
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbols*http://boinc.berkeley.edu/symstore


SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :

SymGetModuleInfo(): GetLastError = 87
ModLoad: 00000000 00000000 ( Symbols Loaded)
Linked PDB Filename :



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 10103, Write: 0, Other 37367614

- I/O Transfers Counters -
Read: 0, Write: 306472, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452
QuotaNonPagedPoolUsage: 3080, QuotaPeakNonPagedPoolUsage: 4120

- Virtual Memory Usage -
VirtualSize: 372932608, PeakVirtualSize: 393134080

- Pagefile Usage -
PagefileUsage: 255254528, PeakPagefileUsage: 298041344

- Working Set Size -
WorkingSetSize: 258863104, PeakWorkingSetSize: 301559808, PageFaultCount: 11275904

*** Dump of thread ID 3484 (state: Ready): ***

- Information -
Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4619531264.000000, User Time: 33662031872.000000, Wait Time: 2098134.000000

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x402BC38E read attempt to address 0x402BC38E

- Registers -
eax=00fc771c ebx=0a5f47f8 ecx=0b4d6f70 edx=402bc38e esi=0b1e4d30 edi=0b1e4d34
eip=402bc38e esp=0012c07c ebp=0b2bd314
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010257

- Callstack -
ChildEBP RetAddr Args to Child
fffffffc 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'402bc38e\'

*** Dump of thread ID 2300 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098132.000000

- Registers -
eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70
eip=7c90e4f4 esp=0121ff40 ebp=0121ff98
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\'

*** Dump of thread ID 1048 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098131.000000

- Registers -
eax=1111fe18 ebx=0975f500 ecx=1111e72c edx=00000771 esi=00000000 edi=1111fdf8
eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20
cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202

- Callstack -
ChildEBP RetAddr Args to Child
1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\'
1111fe30 006a4f64 000007d0 4cba9745 0012bef0 0975f568 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\'
7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\'
8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\'


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>

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Message 4083 - Posted: 27 May 2008, 12:41:41 UTC

Looks like the first mini 1.26 task I got failed:

[http://ralph.bakerlab.org/result.php?resultid=1017106

<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x00486019 read attempt to address 0x0000000C

Engaging BOINC Windows Runtime Debugger...
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Message 4084 - Posted: 28 May 2008, 6:21:10 UTC
Last modified: 28 May 2008, 6:21:58 UTC

Task ID 1016915
Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0
Workunit 903223
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)
Computer ID 12756
CPU time 7347.984
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<stderr_txt>
# cpu_run_time_pref: 7200
Error writing
** THEN ANOTHER 4605 LINES OF \"Error writing\" ***
</stderr_txt>
]]>

Validate state Invalid
Claimed credit 22.8747379626083
Granted credit 0
application version 1.26

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Message 4085 - Posted: 28 May 2008, 6:37:54 UTC

This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it\'s error reporting and also crashed.

Task ID 1017033
Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1
Workunit 903210
Created 27 May 2008 4:47:19 UTC
Sent 27 May 2008 5:20:20 UTC
Received 28 May 2008 4:01:03 UTC
Server state Over
Outcome Client error
Client state Compute error
Exit status -1073741819 (0xffffffffc0000005)
Computer ID 12756
Report deadline 31 May 2008 5:20:20 UTC
CPU time 47.92188
stderr out

<core_client_version>6.1.0</core_client_version>
<![CDATA[
<message>
- exit code -1073741819 (0xc0000005)
</message>
<stderr_txt>


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 6.3.2


Dump Timestamp : 05/27/08 22:56:12
Loaded Library : D:\\BOINC\\dbghelp.dll
Loaded Library : D:\\BOINC\\symsrv.dll
Loaded Library : D:\\BOINC\\srcsrv.dll
LoadLibraryA( D:\\BOINC\\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: D:\\BOINC\\slots\\1;D:\\BOINC\\projects\\ralph.bakerlab.org;srv*C:\\TEMP\\symbols*http://msdl.microsoft.com/download/symbols;srv*C:\\TEMP\\symbols*http://boinc.berkeley.edu/symstore


ModLoad: 00400000 004f2000 D:\\BOINC\\projects\\ralph.bakerlab.org\\minirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded)
Linked PDB Filename : C:\\cygwin\\home\\boinc\\boinc_build\\minirosetta\\minirosetta_1.26\\mini\\Visual Studio\\BoincRelease\\minirosetta_1.26_windows_intelx86.pdb

...

*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>

]]>

Validate state Invalid
Claimed credit 0.1491838370464
Granted credit 0
application version 1.26

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Profile David Emigh
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Message 4087 - Posted: 29 May 2008, 4:50:58 UTC

This one errored out in a little over 17 seconds

resultid=1016809

My first mini 1.26
RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!
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Message 4088 - Posted: 29 May 2008, 12:00:45 UTC

Also had an access violation on one machine like the other testers here, as well as two other error types;

Maximum Disk Space Exceeded on this WU
and
SIGSEGV : Segmentation Violation on this WU
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Profile David Emigh
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Message 4089 - Posted: 29 May 2008, 13:52:35 UTC
Last modified: 29 May 2008, 14:04:42 UTC

Validate error at 2800+ seconds

resultid=1018498

1/3 on Mini 1.26 at this point. Which is to say, I have had one success.
RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!
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Path7

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Message 4090 - Posted: 29 May 2008, 16:40:30 UTC

Hello all,
Received a file x-fer error (error -161) on Result I.d. 1017608
Boinc 5.10.45. Os: Windows XP home SP3.

From Boinc:
29-May-2008 05:17:16 [ralph@home] Computation for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 finished
29-May-2008 05:17:16 [ralph@home] Output file
1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0_0 for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 absent

Have a nice day,
Path7.
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Evan

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Message 4091 - Posted: 29 May 2008, 22:09:30 UTC

validate error 1018986

the stderr text says Error writing.
I won\'t copy it here as it only takes about 135 screens give or take a few.
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Message 4092 - Posted: 30 May 2008, 12:35:40 UTC - in response to Message 4077.  

Unfortunately, my first 1.26 WU failed.

Incorrect function. (0x1) - exit code 1 (0x1)

fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157

The same outcome here:
process exited with code 1 (0x1, -255)
fragment reading error -- pdb, chain and seqpos mismatch
position: 66; neighbor: 187; line: 2

ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb
ERROR:: Exit from: src/core/io/pdb/pose_io.cc line: 157[/code]


Peter
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Profile David Emigh
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Message 4094 - Posted: 31 May 2008, 12:34:23 UTC
Last modified: 31 May 2008, 12:40:01 UTC

Validate error here at 3700+ seconds:

2oq2a_14_BOINC_CASP8_LOOPRELAX-2oq2a_14-_4064_10_1

The stderr_txt output consists of the painfully familiar many thousands of repetitions of the phrase \"Error writing

At this point, I am 2/5 on mini 1.26
RALPH and Rosie sittin' in a tree,
F - O - L - D - I - N - G!
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Thomas Leibold

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Message 4099 - Posted: 1 Jun 2008, 23:15:09 UTC

CASP8_t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_4062_1_1
Workunit http://ralph.bakerlab.org/workunit.php?wuid=903281
Crashed after about 10 seconds and has been stuck like this ever since. It is now overdue and boinc manager reports the workunit as \"Running, high priority\" (but not consuming any cpu time). I\'m going to abort it now.

The same workunit also failed for two other users, but apparently didn\'t get stuck on their systems.

I didn\'t see anything unusual in the stdout.txt file, lots of \'inflating ...\' messages followed by the line \'Starting watchdog ...\' and then silence.

Contents of stderr.txt (note that crash occurred prior to reporting the cpu runtime preference):
::::::::::::::
stderr.txt
::::::::::::::
WARNING: Override of option -out:nstruct sets a different value
SIGABRT: abort called
Stack trace (19 frames):
[0x87e0bcb]
[0x880b110]
[0xffffe420]
[0x886dcd4]
[0x8883553]
[0x88885b9]
[0x8888897]
[0x8859221]
[0x885acc9]
[0x846d7de]
[0x81e0b39]
[0x846da2d]
[0x847134b]
[0x81d858e]
[0x813ba92]
[0x80803c4]
[0x804bd84]
[0x8866bdc]
[0x8048111]

Exiting...
# cpu_run_time_pref: 14400
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Message 4100 - Posted: 2 Jun 2008, 11:54:08 UTC

Hope you don\'t release this WU type for Rosetta if it\'s going to give such low credit.

The WU ran for over 16,000 seconds,
producing 1 decoy,
for this effort I was granted 4.33 credits,
or 0.9 credits an hour.

That\'s pretty (piss) poor in anyones book.
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Message 4102 - Posted: 3 Jun 2008, 17:59:24 UTC

I\'ve the problem, that the screensaver did not work on MacOS Intel. The show graphics via the BOINC manager works.
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Message boards : RALPH@home bug list : minirosetta v1.26 bug thread



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