minirosetta v1.26 bug thread

minirosetta v1.26 bug thread

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Message boards : RALPH@home bug list : minirosetta v1.26 bug thread

Author	Message
James Forum moderator Project developer Project scientist Joined: Jun 22 06 Posts: 19 ID: 1548 Credit: 278 RAC: 0	Message 4075 - Posted 27 May 2008 0:35:48 UTC
	We\'re releasing version 1.26 of minirosetta that will hopefully fix the errors in the previous version: - improper reading of the psipred_ss2 file - problems serializing the Pose resulting in a long list of \"Error writing\" messages. Post bugs/issues here. ____________
	ID: 4075 \|

KC0ISW Joined: Feb 17 06 Posts: 20 ID: 452 Credit: 11,725 RAC: 0	Message 4076 - Posted 27 May 2008 6:01:43 UTC Last modified: 27 May 2008 6:05:30 UTC
	One unit failed after 54 mins http://ralph.bakerlab.org/result.php?resultid=1016932 still getting writing error ____________
	ID: 4076 \|

BigMike Joined: Feb 23 06 Posts: 63 ID: 738 Credit: 58,730 RAC: 0	Message 4077 - Posted 27 May 2008 6:36:54 UTC - in response to Message 4075. Last modified: 27 May 2008 6:44:57 UTC
	Unfortunately, my first 1.26 WU failed. <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> fragment reading error -- pdb, chain and seqpos mismatch position: 66; neighbor: 187; line: 2 ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157 called boinc_finish </stderr_txt> ]]> ==Mike ____________ Don't believe everything you think.
	ID: 4077 \|

BigMike Joined: Feb 23 06 Posts: 63 ID: 738 Credit: 58,730 RAC: 0	Message 4078 - Posted 27 May 2008 6:53:53 UTC
	Just had another one fail, this time on disk write errors. The message in the log is: 5/26/2008 11:43:30 PM\|ralph@home\|Aborting task t393_lr_CASP8_round2_centroid_aaT0393_2I76A_10_0002_4059_2_0: exceeded disk limit: 97.71MB > 95.37MB But this doesn\'t make any sense. My free space is 33GB, and all my BOINC preferences are set in the 100GB range. 95.37MB is a garbage number. ==Mike ____________ Don't believe everything you think.
	ID: 4078 \|

KC0ISW Joined: Feb 17 06 Posts: 20 ID: 452 Credit: 11,725 RAC: 0	Message 4080 - Posted 27 May 2008 11:53:13 UTC Last modified: 27 May 2008 11:57:54 UTC
	http://ralph.bakerlab.org/result.php?resultid=1017012 <core_client_version>6.3.1</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 86400 # cpu_run_time_pref: 86400 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 6.3.2 Dump Timestamp : 05/27/08 03:04:52 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\2;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://msdl.microsoft.com/download/symbols;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://boinc.berkeley.edu/symstore SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : * Dump of the Process Statistics: * - I/O Operations Counters - Read: 6487, Write: 0, Other 2025 - I/O Transfers Counters - Read: 0, Write: 578023, Other 0 - Paged Pool Usage - QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452 QuotaNonPagedPoolUsage: 2440, QuotaPeakNonPagedPoolUsage: 3880 - Virtual Memory Usage - VirtualSize: 94568448, PeakVirtualSize: 94572544 - Pagefile Usage - PagefileUsage: 40837120, PeakPagefileUsage: 44445696 - Working Set Size - WorkingSetSize: 43159552, PeakWorkingSetSize: 46694400, PageFaultCount: 9534797 * Dump of thread ID 3464 (state: Waiting): * - Information - Status: Wait Reason: UserRequest, , Kernel Time: 701562496.000000, User Time: 66297032704.000000, Wait Time: 1851852.000000 - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00472901 read attempt to address 0x00030029 - Registers - eax=00030021 ebx=00000000 ecx=00030021 edx=0012af9c esi=0012b0f0 edi=00000006 eip=00472901 esp=0012adb0 ebp=0012b00c cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010246 - Callstack - ChildEBP RetAddr Args to Child 0012b00c 00706814 0012b0e8 03314690 ffffffff 00000005 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00472901\' 0012bc70 006f1af3 0012d4e8 28e5aa82 0012d4e8 02a0e9b0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00706814\' 0012c878 006efd86 0012d4e8 0012c89c 28e5de8e 03314690 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006f1af3\' 00000005 00000000 00000000 00000000 00000000 00000000 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006efd86\' * Dump of thread ID 3732 (state: Waiting): * - Information - Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851846.000000 - Registers - eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70 eip=7c90e4f4 esp=0121ff40 ebp=0121ff98 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202 - Callstack - ChildEBP RetAddr Args to Child 0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\' 0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\' 0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\' * Dump of thread ID 1112 (state: Waiting): * - Information - Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1851790.000000 - Registers - eax=0211fe18 ebx=016c8f00 ecx=0211e72c edx=00000d2a esi=00000000 edi=0211fdf8 eip=7c90e4f4 esp=0211fdc8 ebp=0211fe20 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202 - Callstack - ChildEBP RetAddr Args to Child 0211fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\' 0211fe30 006a4f64 000007d0 2ae6e842 0012d034 016c8f78 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\' 7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\' 8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\' * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]> ____________
	ID: 4080 \|

KC0ISW Joined: Feb 17 06 Posts: 20 ID: 452 Credit: 11,725 RAC: 0	Message 4081 - Posted 27 May 2008 11:54:37 UTC Last modified: 27 May 2008 12:01:13 UTC
	another writing error i left out writing error listed here because it very long. http://ralph.bakerlab.org/result.php?resultid=1017013 BOINC Windows Runtime Debugger Version 6.3.2 Dump Timestamp : 05/27/08 02:22:15 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://msdl.microsoft.com/download/symbols;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://boinc.berkeley.edu/symstore SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : * Dump of the Process Statistics: * - I/O Operations Counters - Read: 11954, Write: 0, Other 31997586 - I/O Transfers Counters - Read: 0, Write: 469632, Other 0 - Paged Pool Usage - QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452 QuotaNonPagedPoolUsage: 3160, QuotaPeakNonPagedPoolUsage: 4480 - Virtual Memory Usage - VirtualSize: 394973184, PeakVirtualSize: 394973184 - Pagefile Usage - PagefileUsage: 280711168, PeakPagefileUsage: 300519424 - Working Set Size - WorkingSetSize: 284270592, PeakWorkingSetSize: 304054272, PageFaultCount: 5373456 * Dump of thread ID 3216 (state: Waiting): * - Information - Status: Wait Reason: UserRequest, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688209.000000 - Unhandled Exception Record - Reason: Breakpoint Encountered (0x80000003) at address 0x7C90120E - Registers - eax=00000000 ebx=00000000 ecx=007a5542 edx=0121613c esi=7c802446 edi=00000001 eip=7c90120e esp=0121fb9c ebp=0121ffec cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000246 - Callstack - ChildEBP RetAddr Args to Child 0121ffec 00000000 0041add0 00000000 00000000 00000008 !DbgBreakPoint+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90120e\' * Dump of thread ID 2636 (state: Running): * - Information - Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4065312512.000000, User Time: 37497188352.000000, Wait Time: 1688209.000000 - Registers - eax=0002d4b2 ebx=09caa2f8 ecx=0b3974a8 edx=00000004 esi=09cc8308 edi=09caa208 eip=0052a234 esp=0012b958 ebp=0012b990 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000206 - Callstack - ChildEBP RetAddr Args to Child 0012b990 00523dee 09caa2f8 09caa208 0b3974a8 0012b9e0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0052a234\' 0012ba4c 004c59f3 0b29e740 0012c354 0012c000 0b3974a0 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'00523dee\' 0b29e628 3fcced12 836d8d0f 3fc0275a 4e02de74 3fc7d74c !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'004c59f3\' a67dc6b9 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'3fcced12\' * Dump of thread ID 3752 (state: Waiting): * - Information - Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 1688168.000000 - Registers - eax=1111fe18 ebx=0975f000 ecx=1111e72c edx=00000820 esi=00000000 edi=1111fdf8 eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202 - Callstack - ChildEBP RetAddr Args to Child 1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\' 1111fe30 006a4f64 000007d0 2abba863 0012bef0 0975f0f0 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\' 7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\' 8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\' * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]> ____________
	ID: 4081 \|

KC0ISW Joined: Feb 17 06 Posts: 20 ID: 452 Credit: 11,725 RAC: 0	Message 4082 - Posted 27 May 2008 11:55:56 UTC Last modified: 27 May 2008 12:00:35 UTC
	another writing error i left out writing error listed here because it very long. http://ralph.bakerlab.org/result.php?resultid=1017220 BOINC Windows Runtime Debugger Version 6.3.2 Dump Timestamp : 05/27/08 04:09:00 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\dbghelp.dll ): GetLastError = 126 Loaded Library : dbghelp.dll LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\symsrv.dll ): GetLastError = 126 LoadLibraryA( symsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\srcsrv.dll ): GetLastError = 126 LoadLibraryA( srcsrv.dll ): GetLastError = 126 LoadLibraryA( C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\version.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\slots\\1;C:\\Documents and Settings\\All Users\\Application Data\\BOINC\\projects\\ralph.bakerlab.org;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://msdl.microsoft.com/download/symbols;srvC:\\DOCUME~1\\jeff\\LOCALS~1\\Temp\\symbolshttp://boinc.berkeley.edu/symstore SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : SymGetModuleInfo(): GetLastError = 87 ModLoad: 00000000 00000000 ( Symbols Loaded) Linked PDB Filename : * Dump of the Process Statistics: * - I/O Operations Counters - Read: 10103, Write: 0, Other 37367614 - I/O Transfers Counters - Read: 0, Write: 306472, Other 0 - Paged Pool Usage - QuotaPagedPoolUsage: 40452, QuotaPeakPagedPoolUsage: 40452 QuotaNonPagedPoolUsage: 3080, QuotaPeakNonPagedPoolUsage: 4120 - Virtual Memory Usage - VirtualSize: 372932608, PeakVirtualSize: 393134080 - Pagefile Usage - PagefileUsage: 255254528, PeakPagefileUsage: 298041344 - Working Set Size - WorkingSetSize: 258863104, PeakWorkingSetSize: 301559808, PageFaultCount: 11275904 * Dump of thread ID 3484 (state: Ready): * - Information - Status: Base Priority: Above Normal, Priority: Above Normal, , Kernel Time: 4619531264.000000, User Time: 33662031872.000000, Wait Time: 2098134.000000 - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x402BC38E read attempt to address 0x402BC38E - Registers - eax=00fc771c ebx=0a5f47f8 ecx=0b4d6f70 edx=402bc38e esi=0b1e4d30 edi=0b1e4d34 eip=402bc38e esp=0012c07c ebp=0b2bd314 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00010257 - Callstack - ChildEBP RetAddr Args to Child fffffffc 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'402bc38e\' * Dump of thread ID 2300 (state: Waiting): * - Information - Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098132.000000 - Registers - eax=0121f8b0 ebx=00000000 ecx=00000005 edx=00000078 esi=00000000 edi=0121ff70 eip=7c90e4f4 esp=0121ff40 ebp=0121ff98 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202 - Callstack - ChildEBP RetAddr Args to Child 0121ff98 7c802455 00000064 00000000 0121ffec 0041addb !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\' 0121ffa8 0041addb 00000064 00000228 7c80b713 00000000 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\' 0121ffec 00000000 0041add0 00000000 00000000 00000008 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'0041addb\' * Dump of thread ID 1048 (state: Waiting): * - Information - Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 2098131.000000 - Registers - eax=1111fe18 ebx=0975f500 ecx=1111e72c edx=00000771 esi=00000000 edi=1111fdf8 eip=7c90e4f4 esp=1111fdc8 ebp=1111fe20 cs=001b ss=0023 ds=0023 es=0023 fs=003b gs=0000 efl=00000202 - Callstack - ChildEBP RetAddr Args to Child 1111fe20 7c802455 000007d0 00000000 7c802446 006a4f64 !KiFastSystemCallRet+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c90e4f4\' 1111fe30 006a4f64 000007d0 4cba9745 0012bef0 0975f568 !Sleep+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'7c802455\' 7c802446 ff006aec 4be80875 5dffffff 900004c2 90909090 !+0x0 SymGetModuleInfo(): GetLastError = \'87\' Address = \'006a4f64\' 8b55ff8b 00000000 00000000 00000000 00000000 00000000 !+0x0 SymFromAddr(): GetLastError = \'126\' SymGetLineFromAddr(): GetLastError = \'126\' SymGetModuleInfo(): GetLastError = \'126\' Address = \'ff006aec\' * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]> ____________
	ID: 4082 \|

nouqraz Joined: May 22 08 Posts: 7 ID: 4329 Credit: 13,627 RAC: 0	Message 4083 - Posted 27 May 2008 12:41:41 UTC
	Looks like the first mini 1.26 task I got failed: [http://ralph.bakerlab.org/result.php?resultid=1017106 <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00486019 read attempt to address 0x0000000C Engaging BOINC Windows Runtime Debugger...
	ID: 4083 \|

Dr Who Fan Joined: Sep 2 06 Posts: 58 ID: 1787 Credit: 10,075 RAC: 0	Message 4084 - Posted 28 May 2008 6:21:10 UTC Last modified: 28 May 2008 6:21:58 UTC
	Task ID 1016915 Name t393_fa_CASP8_round2_fullatom_relax_aaT0393_2I76A_3_0002_4061_1_0 Workunit 903223 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) Computer ID 12756 CPU time 7347.984 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 7200 Error writing THEN ANOTHER 4605 LINES OF \"Error writing\" * </stderr_txt> ]]> Validate state Invalid Claimed credit 22.8747379626083 Granted credit 0 application version 1.26 ____________
	ID: 4084 \|

Dr Who Fan Joined: Sep 2 06 Posts: 58 ID: 1787 Credit: 10,075 RAC: 0	Message 4085 - Posted 28 May 2008 6:37:54 UTC
	This task started to run as soon as the previous crashed task (see my previous post in this thread) finished it\'s error reporting and also crashed. Task ID 1017033 Name t393_fx_CASP8_round2_loop_farlx_aaT0393_2I76A_5_0002_4060_1_1 Workunit 903210 Created 27 May 2008 4:47:19 UTC Sent 27 May 2008 5:20:20 UTC Received 28 May 2008 4:01:03 UTC Server state Over Outcome Client error Client state Compute error Exit status -1073741819 (0xffffffffc0000005) Computer ID 12756 Report deadline 31 May 2008 5:20:20 UTC CPU time 47.92188 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x006F85F0 read attempt to address 0x00000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 6.3.2 Dump Timestamp : 05/27/08 22:56:12 Loaded Library : D:\\BOINC\\dbghelp.dll Loaded Library : D:\\BOINC\\symsrv.dll Loaded Library : D:\\BOINC\\srcsrv.dll LoadLibraryA( D:\\BOINC\\version.dll ): GetLastError = 126 Loaded Library : version.dll Debugger Engine : 4.0.5.0 Symbol Search Path: D:\\BOINC\\slots\\1;D:\\BOINC\\projects\\ralph.bakerlab.org;srvC:\\TEMP\\symbolshttp://msdl.microsoft.com/download/symbols;srvC:\\TEMP\\symbolshttp://boinc.berkeley.edu/symstore ModLoad: 00400000 004f2000 D:\\BOINC\\projects\\ralph.bakerlab.org\\minirosetta_1.26_windows_intelx86.exe (-nosymbols- Symbols Loaded) Linked PDB Filename : C:\\cygwin\\home\\boinc\\boinc_build\\minirosetta\\minirosetta_1.26\\mini\\Visual Studio\\BoincRelease\\minirosetta_1.26_windows_intelx86.pdb ... * Debug Message Dump * Foreground Window Data *** Window Name : Window Class : Window Process ID: 0 Window Thread ID : 0 Exiting... </stderr_txt> ]]> Validate state Invalid Claimed credit 0.1491838370464 Granted credit 0 application version 1.26 ____________
	ID: 4085 \|

David Emigh Joined: Jan 6 08 Posts: 27 ID: 3934 Credit: 26,482 RAC: 0	Message 4087 - Posted 29 May 2008 4:50:58 UTC
	This one errored out in a little over 17 seconds resultid=1016809 My first mini 1.26 ____________ RALPH and Rosie sittin' in a tree, F - O - L - D - I - N - G!
	ID: 4087 \|

Conan Joined: Feb 16 06 Posts: 322 ID: 145 Credit: 1,156,323 RAC: 0	Message 4088 - Posted 29 May 2008 12:00:45 UTC
	Also had an access violation on one machine like the other testers here, as well as two other error types; Maximum Disk Space Exceeded on this WU and SIGSEGV : Segmentation Violation on this WU ____________
	ID: 4088 \|

David Emigh Joined: Jan 6 08 Posts: 27 ID: 3934 Credit: 26,482 RAC: 0	Message 4089 - Posted 29 May 2008 13:52:35 UTC Last modified: 29 May 2008 14:04:42 UTC
	Validate error at 2800+ seconds resultid=1018498 1/3 on Mini 1.26 at this point. Which is to say, I have had one success. ____________ RALPH and Rosie sittin' in a tree, F - O - L - D - I - N - G!
	ID: 4089 \|

Path7 Joined: Feb 11 08 Posts: 56 ID: 4036 Credit: 4,974 RAC: 0	Message 4090 - Posted 29 May 2008 16:40:30 UTC
	Hello all, Received a file x-fer error (error -161) on Result I.d. 1017608 Boinc 5.10.45. Os: Windows XP home SP3. From Boinc: 29-May-2008 05:17:16 [ralph@home] Computation for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 finished 29-May-2008 05:17:16 [ralph@home] Output file 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0_0 for task 1tig__JUMPC_NAT_NOHAIR_JUMP_SAVE_ALL_OUT-1tig_-_4070_1_0 absent Have a nice day, Path7.
	ID: 4090 \|

Evan Joined: Dec 23 07 Posts: 75 ID: 3893 Credit: 69,584 RAC: 0	Message 4091 - Posted 29 May 2008 22:09:30 UTC
	validate error 1018986 the stderr text says Error writing. I won\'t copy it here as it only takes about 135 screens give or take a few.
	ID: 4091 \|

Pepo Joined: Sep 8 06 Posts: 104 ID: 1812 Credit: 36,890 RAC: 0	Message 4092 - Posted 30 May 2008 12:35:40 UTC - in response to Message 4077.
	Unfortunately, my first 1.26 WU failed. Incorrect function. (0x1) - exit code 1 (0x1) fragment reading error -- pdb, chain and seqpos mismatch position: 66; neighbor: 187; line: 2 ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb ERROR:: Exit from: ..\\..\\src\\core\\io\\pdb\\pose_io.cc line: 157 The same outcome here: process exited with code 1 (0x1, -255) fragment reading error -- pdb, chain and seqpos mismatch position: 66; neighbor: 187; line: 2 ERROR: Cannot open file aaT0396_1JR8A_1_0001.pdb ERROR:: Exit from: src/core/io/pdb/pose_io.cc line: 157[/code] Peter
	ID: 4092 \|

David Emigh Joined: Jan 6 08 Posts: 27 ID: 3934 Credit: 26,482 RAC: 0	Message 4094 - Posted 31 May 2008 12:34:23 UTC Last modified: 31 May 2008 12:40:01 UTC
	Validate error here at 3700+ seconds: 2oq2a_14_BOINC_CASP8_LOOPRELAX-2oq2a_14-_4064_10_1 The stderr_txt output consists of the painfully familiar many thousands of repetitions of the phrase \"Error writing At this point, I am 2/5 on mini 1.26 ____________ RALPH and Rosie sittin' in a tree, F - O - L - D - I - N - G!
	ID: 4094 \|

Thomas Leibold Joined: Feb 25 07 Posts: 27 ID: 2684 Credit: 77,464 RAC: 0	Message 4099 - Posted 1 Jun 2008 23:15:09 UTC
	CASP8_t0391_BOINC_LOOP_IGNORE_THE_REST-S25-10-S3-5--1a19A-_4062_1_1 Workunit http://ralph.bakerlab.org/workunit.php?wuid=903281 Crashed after about 10 seconds and has been stuck like this ever since. It is now overdue and boinc manager reports the workunit as \"Running, high priority\" (but not consuming any cpu time). I\'m going to abort it now. The same workunit also failed for two other users, but apparently didn\'t get stuck on their systems. I didn\'t see anything unusual in the stdout.txt file, lots of \'inflating ...\' messages followed by the line \'Starting watchdog ...\' and then silence. Contents of stderr.txt (note that crash occurred prior to reporting the cpu runtime preference): :::::::::::::: stderr.txt :::::::::::::: WARNING: Override of option -out:nstruct sets a different value SIGABRT: abort called Stack trace (19 frames): [0x87e0bcb] [0x880b110] [0xffffe420] [0x886dcd4] [0x8883553] [0x88885b9] [0x8888897] [0x8859221] [0x885acc9] [0x846d7de] [0x81e0b39] [0x846da2d] [0x847134b] [0x81d858e] [0x813ba92] [0x80803c4] [0x804bd84] [0x8866bdc] [0x8048111] Exiting... # cpu_run_time_pref: 14400
	ID: 4099 \|

Conan Joined: Feb 16 06 Posts: 322 ID: 145 Credit: 1,156,323 RAC: 0	Message 4100 - Posted 2 Jun 2008 11:54:08 UTC
	Hope you don\'t release this WU type for Rosetta if it\'s going to give such low credit. The WU ran for over 16,000 seconds, producing 1 decoy, for this effort I was granted 4.33 credits, or 0.9 credits an hour. That\'s pretty (piss) poor in anyones book. ____________
	ID: 4100 \|

Dotsch Joined: Mar 4 06 Posts: 11 ID: 975 Credit: 8,407 RAC: 0	Message 4102 - Posted 3 Jun 2008 17:59:24 UTC
	I\'ve the problem, that the screensaver did not work on MacOS Intel. The show graphics via the BOINC manager works. ____________
	ID: 4102 \|

nouqraz Joined: May 22 08 Posts: 7 ID: 4329 Credit: 13,627 RAC: 0	Message 4104 - Posted 7 Jun 2008 1:20:32 UTC
	Four more that used no CPU time, despite saying that they were \'running\' and then after the report date approached/passed said \'running, high priority\'. BOINC eventually ended them. http://ralph.bakerlab.org/result.php?resultid=1018875 http://ralph.bakerlab.org/result.php?resultid=1017917 http://ralph.bakerlab.org/result.php?resultid=1017605 http://ralph.bakerlab.org/result.php?resultid=1023410 The same quad core client machine currently has another batch of 4 mini 1.26 tasks that are \'running\' but not using any CPU time. All 4 have also passed their report deadline. Waiting on BOINC to give up on them and cancel... so I can get 4 more tasks that won\'t use any CPU time...
	ID: 4104 \|

Message boards : RALPH@home bug list : minirosetta v1.26 bug thread