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Minirosetta 1.61

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Message boards : RALPH@home bug list : Minirosetta 1.61

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mtyka
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Message 4776 - Posted 16 Apr 2009 3:07:52 UTC

    Hi everyone,

    Here's the new bug thread for 1.60 (1.59 had a quirk).

    THis one has largerly new code in it but not a lot of bugfixes - I hope it's as stable as the last one, that's what we need to find out.

    Thanks for all your bugreports!

    Mike

    Profile feet1st

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    Message 4777 - Posted 16 Apr 2009 4:31:47 UTC

      minirosetta_database_rev28862.zip ...116MB??? The other DBs were more like 16!
      ____________

      mtyka
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      Message 4778 - Posted 16 Apr 2009 5:03:19 UTC - in response to Message 4777.

        Hmmm seriously 116 MB ? Ok, something must have gone wrong there...

        mtyka
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        Message 4779 - Posted 16 Apr 2009 5:11:16 UTC - in response to Message 4778.

          Ok, we're back to 18MB.

          With App 1.61

          Profile Paul D. Buck

          Joined: Jan 14 09
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          Message 4780 - Posted 16 Apr 2009 6:42:30 UTC - in response to Message 4776.

            Hi everyone,

            Here's the new bug thread for 1.60 (1.59 had a quirk).

            THis one has largerly new code in it but not a lot of bugfixes - I hope it's as stable as the last one, that's what we need to find out.

            Thanks for all your bugreports!

            Mike


            So do we kill the 1.59 tasks?

            Snagletooth

            Joined: May 4 07
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            Message 4781 - Posted 16 Apr 2009 9:17:15 UTC

              DvR115G_BOINC_ABINITIO_RDC_TEST_SAVE_ALL_OUT_IGNORE_THE_REST-S25-15-S3-28--DvR115G-_9225_1 crashed after 14.56 seconds, one second faster than the first attempt with Minirosetta 1.59.

              Evan

              Joined: Dec 23 07
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              Message 4782 - Posted 16 Apr 2009 9:57:54 UTC - in response to Message 4776.

                I assume the problem for 1.59 was the graphics.

                svincent

                Joined: Apr 4 08
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                Message 4783 - Posted 16 Apr 2009 15:01:38 UTC

                  These 3 tasks all (named DvR115G_BOINC_ABINITIO*) crashed almost immediately on Mac in the same routine

                  1424622
                  1424561
                  1423738

                  Crashed executable name: minirosetta_1.59_i686-apple-darwin
                  built using BOINC library version 6.5.0
                  Machine type Intel 80486 (32-bit executable)
                  System version: Macintosh OS 10.4.11 build 8S2167
                  Thu Apr 16 03:11:08 2009

                  Thread 0 Crashed:
                  0 ...etta_1.59_i686-apple-darwin 0x0098727b __ZNK4core7scoring7methods29ResidualDipolarCouplingEnergy16calc_ordermatrixERKmS4_RN9ObjexxFCL8FArray2DIdEERNS5_8FArray1DIdEESB_Rb + 4429
                  1 ...etta_1.59_i686-apple-darwin 0x00989832 __ZNK4core7scoring7methods29ResidualDipolarCouplingEnergy12eval_dipolarERNS_4pose4PoseE + 1150
                  2 ...etta_1.59_i686-apple-darwin 0x0098a1aa __ZNK4core7scoring7methods29ResidualDipolarCouplingEnergy21finalize_total_energyERNS_4pose4PoseERKNS0_13ScoreFunctionERNS0_10EMapVectorE + 24
                  3 ...etta_1.59_i686-apple-darwin 0x00189868 __ZNK4core7scoring13ScoreFunctionclERNS_4pose4PoseE + 4378
                  4 ...etta_1.59_i686-apple-darwin 0x003285bb __ZN9protocols5moves10MonteCarlo14score_functionERKN4core7scoring13ScoreFunctionE + 129
                  5 ...etta_1.59_i686-apple-darwin 0x00564535 __ZN9protocols8abinitio15ClassicAbinitio16replace_scorefxnERN4core4pose4PoseENS1_7StageIDEd + 309
                  6 ...etta_1.59_i686-apple-darwin 0x00563fd9 __ZN9protocols8abinitio15ClassicAbinitio14prepare_stage2ERN4core4pose4PoseE + 51
                  7 ...etta_1.59_i686-apple-darwin 0x0056fa42 __ZN9protocols8abinitio15ClassicAbinitio5applyERN4core4pose4PoseE + 1774
                  8 ...etta_1.59_i686-apple-darwin 0x00120d0b __ZN9protocols8abinitio18AbrelaxApplication4foldERN4core4pose4PoseEN7utility7pointer10owning_ptrINS_8ProtocolEEE + 4093
                  9 ...etta_1.59_i686-apple-darwin 0x001335a7 __ZN9protocols8abinitio18AbrelaxApplication3runEv + 807
                  10 ...etta_1.59_i686-apple-darwin 0x00003bbb _main + 1395
                  11 ...etta_1.59_i686-apple-darwin 0x00001eee __start + 216
                  12 ...etta_1.59_i686-apple-darwin 0x00001e15 start + 41


                  This one 1424657 (broker_lb_test2_hb_t369__IGNORE_THE_REST_9256_1_1) also crashed after apparent successful completion due to a file error.

                  ======================================================
                  DONE :: 5 starting structures 3392.47 cpu seconds
                  This process generated 5 decoys from 5 attempts
                  ======================================================

                  BOINC :: Watchdog shutting down...
                  BOINC :: BOINC support services shutting down cleanly ...
                  called boinc_finish

                  </stderr_txt>
                  <message>
                  <file_xfer_error>
                  <file_name>broker_lb_test2_hb_t369__IGNORE_THE_REST_9256_1_1_0</file_name>
                  <error_code>-161</error_code>
                  </file_xfer_error>

                  </message>
                  ]]>

                  Profile Paul D. Buck

                  Joined: Jan 14 09
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                  Message 4784 - Posted 16 Apr 2009 16:59:42 UTC

                    On OS-X I am getting:

                    sh: /usr/bin/atos: No such file or directory
                    0 0x0067c69d SIGPIPE: write on a pipe with no reader
                    1 0x0045e59a SIGPIPE: write on a pipe with no reader
                    2 0x01fd52bb SIGPIPE: write on a pipe with no reader
                    3 0xffffffff SIGPIPE: write on a pipe with no reader
                    4 0x00989832 SIGPIPE: write on a pipe with no reader
                    5 0x0098a1aa SIGPIPE: write on a pipe with no reader
                    6 0x00189868 SIGPIPE: write on a pipe with no reader
                    7 0x003285bb SIGPIPE: write on a pipe with no reader
                    8 0x00564535 SIGPIPE: write on a pipe with no reader
                    9 0x00563fd9 SIGPIPE: write on a pipe with no reader
                    10 0x0056fa42 SIGPIPE: write on a pipe with no reader
                    11 0x00120d0b SIGPIPE: write on a pipe with no reader
                    12 0x001335a7 SIGPIPE: write on a pipe with no reader
                    13 0x00003bbb SIGPIPE: write on a pipe with no reader
                    14 0x00001eee SIGPIPE: write on a pipe with no reader
                    15 0x00001e15

                    1424721
                    1424742
                    1424743
                    1424747


                    On XP Pro 32-Bit

                    - Unhandled Exception Record -
                    Reason: Access Violation (0xc0000005) at address 0x00611ED9 write attempt to address 0x00000000

                    1424865

                    It is probably the same problem but seen differently by the two OS ...

                    Message boards : RALPH@home bug list : Minirosetta 1.61


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