Minirosetta 1.67

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mtyka
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Message 4815 - Posted: 7 May 2009, 7:45:41 UTC

This should have the weired Etable bug solved as well as having a nifty new threading mode built in.

Me go to bed now. Brain dead.
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Message 4816 - Posted: 7 May 2009, 15:23:12 UTC

Please explain more about "nifty new threading mode" when you get a chance. Is this something we will see in the graphic? Or pursuing multiple models simultaneously? Or what? Will it take more memory to run?
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Message 4817 - Posted: 9 May 2009, 11:02:55 UTC
Last modified: 9 May 2009, 11:08:30 UTC

My Mac picked up a resend but broker_lb_test5_hb_t303__IGNORE_THE_REST_9495_5_1 crashed at the end of it's run with exit status 193

# cpu_run_time_pref: 36000
SIGBUS: bus error

Crashed executable name: minirosetta_1.67_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.6 build 9G55
Sat May 9 04:58:40 2009

sh: /usr/bin/atos: No such file or directory
0 0x006c0345 SIGPIPE: write on a pipe with no reader
1 0x004a3d8e SIGPIPE: write on a pipe with no reader
2 0x90a9e2bb SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0002a4a7 SIGPIPE: write on a pipe with no reader
5 0x000910d0 SIGPIPE: write on a pipe with no reader
6 0x00518bdc SIGPIPE: write on a pipe with no reader
7 0x00b59c20 SIGPIPE: write on a pipe with no reader
8 0x0013b70a SIGPIPE: write on a pipe with no reader
9 0x00005a5b SIGPIPE: write on a pipe with no reader
10 0x0000292e SIGPIPE: write on a pipe with no reader
11 0x00002855 SIGPIPE: write on a pipe with no reader
12 0x00000019
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x90a66802 ecx: 0xbfffc25c edx: 0x90a321c6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc298 esp: 0xbfffc25c
ss: 0x0000001f efl: 0x00000206 eip: 0x90a321c6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037


It previously failed on a computer using Linux:

Exit status -185 (0xffffffffffffff47)
Computer ID 17872
Report deadline 11 May 2009 7:55:59 UTC
CPU time 0
stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
Input file minirosetta_database_rev29025.zip missing or invalid: -120
</message>
]]>


Mike, you might want to sticky this thread unless we're already giving up on 1.67 and going straight to 1.68

Snags
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Message 4818 - Posted: 12 May 2009, 22:48:32 UTC

And another process exited with code 193 (0xc1, -63): lb_alnmatrix_thread4_hb_t286__IGNORE_THE_REST_9611_7_0

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Profile Krzychu P.

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Message 4819 - Posted: 13 May 2009, 5:53:26 UTC

Hi,

an error occured in this task:
http://ralph.bakerlab.org/result.php?resultid=1439583

with exit code:
- exit code -1073741819 (0xc0000005)

05/12/09 21:32:36|ralph@home|[task_debug] task_state=EXECUTING for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 from start
05/12/09 21:34:55|ralph@home|[task_debug] result lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 checkpointed
05/12/09 21:36:55|ralph@home|[task_debug] result lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 checkpointed
05/12/09 21:38:14|ralph@home|[task_debug] Process for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 exited
05/12/09 21:38:14|ralph@home|[task_debug] task_state=EXITED for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 from handle_exited_app
05/12/09 21:38:14|ralph@home|[task_debug] result state=COMPUTE_ERROR for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 from CS::report_result_error
05/12/09 21:38:14|ralph@home|[task_debug] Process for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 exited
05/12/09 21:38:14|ralph@home|[task_debug] exit code -1073741819 (0xc0000005):
05/12/09 21:38:14|ralph@home|Computation for task lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 finished
05/12/09 21:38:14|ralph@home|Output file lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0_0 for task lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 absent
05/12/09 21:38:14|ralph@home|[task_debug] result state=COMPUTE_ERROR for lb_alnmatrix_brokerthread_hb_t360__IGNORE_THE_REST_9669_7_0 from CS::app_finished


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Pepo
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Message 4820 - Posted: 15 May 2009, 12:03:06 UTC - in response to Message 4819.  

an error occured in this task:
http://ralph.bakerlab.org/result.php?resultid=1439583

with exit code:
- exit code -1073741819 (0xc0000005)

Apparently the same error happened to my task lb_alnmatrix_brokerthread_hb_t328__IGNORE_THE_REST_9664_17_0 - error 1073741819 (0xffffffffc0000005), "Access Violation (0xc0000005) at address 0x0088A3C2 write attempt to address 0x00000000", broken stack for the errored thread, BOINC Windows Runtime Debugger dump is available.

Windows XP SP3, BOINC 6.6.23.
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Profile ChertseyAl
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Message 4823 - Posted: 17 May 2009, 10:08:44 UTC

Quite a few compute errors (about 10%), both XP and Linux, all error -161:

frb_0_8_mike_chosen_cst_mergefrag_hb_t293__IGNORE_THE_REST_1NV8A_16_9981_1
http://ralph.bakerlab.org/workunit.php?wuid=1288232
http://ralph.bakerlab.org/result.php?resultid=1453676
XP

gen2_direct_frag_cst_filt5_hb_t305__IGNORE_THE_REST_2AHSA_6_9896_1
http://ralph.bakerlab.org/workunit.php?wuid=1283845
http://ralph.bakerlab.org/result.php?resultid=1449190
XP

gen2_seqrelax_200_cst_hb_t305__IGNORE_THE_REST_2AHSA_2_9836_1
http://ralph.bakerlab.org/workunit.php?wuid=1282082
http://ralph.bakerlab.org/result.php?resultid=1447381
Linux

gen2_direct_frag_cst_hb_t305__IGNORE_THE_REST_1RPMA_5_9816_1
http://ralph.bakerlab.org/workunit.php?wuid=1281311
http://ralph.bakerlab.org/result.php?resultid=1446587
XP

gen2_direct_frag_cst_hb_t305__IGNORE_THE_REST_1YFOA_4_9816_1
http://ralph.bakerlab.org/workunit.php?wuid=1281305
http://ralph.bakerlab.org/result.php?resultid=1446581
XP

frb_0_8_mike_chosen_cst_9mer_hb_t305__IGNORE_THE_REST_1RPMA_4_9736_1
http://ralph.bakerlab.org/workunit.php?wuid=1278259
http://ralph.bakerlab.org/result.php?resultid=1444761
XP

Al.


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