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Minirosetta 1.74/1.75

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Message boards : RALPH@home bug list : Minirosetta 1.74/1.75

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mtyka
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Message 4838 - Posted 10 Jun 2009 16:33:31 UTC

    A bugfix to 1.73 - it slipped through the net.

    Profile Conan
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    Message 4839 - Posted 11 Jun 2009 2:13:06 UTC

      Have had 3 consecutive work units fail with "Process got Signal 11"

      See 1473843
      1473735
      1473736

      ____________

      Profile FalconFly

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      Message 4841 - Posted 17 Jun 2009 10:20:40 UTC

        Last modified: 17 Jun 2009 10:23:05 UTC

        Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

        http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

        My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

        The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

        If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).

        Profile robertmiles

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        Message 4844 - Posted 18 Jun 2009 23:46:38 UTC - in response to Message 4841.

          I've read that BOINC 6.6.36 finally did something related to the lockfile problem. No word yet on whether it fixes this problem, and since this version has problems with GPU use (as well as use under Linux), I'm not planning to try it.

          Profile robertmiles

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          Message 4845 - Posted 18 Jun 2009 23:52:09 UTC - in response to Message 4841.

            Last modified: 18 Jun 2009 23:58:41 UTC

            Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

            http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

            My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

            The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

            If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).


            What version of BOINC are you running? If it's 6.6.36, note that it has known problems running properly under Linux.

            Profile FalconFly

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            Message 4846 - Posted 19 Jun 2009 14:41:05 UTC - in response to Message 4845.

              Last modified: 19 Jun 2009 14:42:15 UTC

              That is running Linux BOINC 6.4.5 x86_64

              I'm now in the process of installing Fedora 11 from scratch, maybe the older Fedora 8 installation got a bit crapped out over time.

              Profile nenym

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              Message 4847 - Posted 20 Jun 2009 0:58:11 UTC

                Last modified: 20 Jun 2009 0:59:47 UTC

                That 1.76 task doesn't show graphics. At start (when "Show graphics" clicked on) the window is empty - black, after 1sec it closes. Name of the task is visible.
                Host ID 17945, WinXP x64.

                Path7

                Joined: Feb 11 08
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                Message 4850 - Posted 21 Jun 2009 10:41:47 UTC

                  Next 1.76 task:
                  lr5_E_rama_map_all_ss_iter04_notsq_rlbd_2hng_SAVE_ALL_OUT_10709_81_0
                  ended with a validate error.

                  After rebooting my computer, this task (re)started from model 1 – according to the graphics.

                  Have a nice day,
                  Path7.

                  svincent

                  Joined: Apr 4 08
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                  Message 4856 - Posted 9 Jul 2009 3:44:11 UTC

                    These tasks all failed on Mac in the same way after nearly an hour.

                    1534904
                    1534905
                    1534906

                    Watchdog active.
                    Hbond tripped: [2009- 7- 8 20:21:41:]
                    interpolate rotamers bin out of range: MET_p:NtermProteinFull 0 nan -61.3722 178.26 73.8396
                    22 27 10 11 2147483649 22 0 nan
                    ERROR:: Exit from: src/core/scoring/dunbrack/RotamericSingleResidueDunbrackLibrary.tmpl.hh line: 590
                    BOINC:: Error reading and gzipping output datafile: default.out
                    called boinc_finish

                    </stderr_txt>
                    ]]>

                    We need a new thread for 1.80.

                    Profile Conan
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                    Message 4857 - Posted 9 Jul 2009 4:27:26 UTC - in response to Message 4856.

                      These tasks all failed on Mac in the same way after nearly an hour.

                      1534904
                      1534905
                      1534906


                      We need a new thread for 1.80.


                      One was created on the 20/6/09, just look further down the list at the first thread after the 'stickied' threads.
                      ____________

                      Profile FalconFly

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                      Message 4860 - Posted 10 Jul 2009 8:26:58 UTC - in response to Message 4845.

                        Last modified: 10 Jul 2009 8:28:14 UTC

                        Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

                        http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

                        My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

                        The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

                        If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).


                        ...update :

                        System now underwent the following changes
                        - new CPU
                        - new RAM
                        - new OS
                        - HD freshly setup from scratch
                        - maximized cooling

                        ...still validation failures (RALPH and Rosetta).

                        Apart from changing the case color or stuff like that, there's absolutely nothing I could do as this point.
                        For that reason I've stopped running RALPH and Rosetta alltogether, seems these are deep buried problems that started sometime 2 years ago when general stability and furthermost reliability was notably decreased under x86_64 Linux.

                        Sad to say that, but Rosetta just doesn't fulfill my min. stability requirements since those days...

                        Message boards : RALPH@home bug list : Minirosetta 1.74/1.75


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