Minirosetta 1.74/1.75

Message boards : RALPH@home bug list : Minirosetta 1.74/1.75

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mtyka
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Message 4838 - Posted: 10 Jun 2009, 16:33:31 UTC

A bugfix to 1.73 - it slipped through the net.

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Message 4839 - Posted: 11 Jun 2009, 2:13:06 UTC

Have had 3 consecutive work units fail with "Process got Signal 11"

See 1473843
1473735
1473736

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Message 4841 - Posted: 17 Jun 2009, 10:20:40 UTC
Last modified: 17 Jun 2009, 10:23:05 UTC

Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).
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Message 4844 - Posted: 18 Jun 2009, 23:46:38 UTC - in response to Message 4841.  

I've read that BOINC 6.6.36 finally did something related to the lockfile problem. No word yet on whether it fixes this problem, and since this version has problems with GPU use (as well as use under Linux), I'm not planning to try it.
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Message 4845 - Posted: 18 Jun 2009, 23:52:09 UTC - in response to Message 4841.  
Last modified: 18 Jun 2009, 23:58:41 UTC

Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).


What version of BOINC are you running? If it's 6.6.36, note that it has known problems running properly under Linux.
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Message 4846 - Posted: 19 Jun 2009, 14:41:05 UTC - in response to Message 4845.  
Last modified: 19 Jun 2009, 14:42:15 UTC

That is running Linux BOINC 6.4.5 x86_64

I'm now in the process of installing Fedora 11 from scratch, maybe the older Fedora 8 installation got a bit crapped out over time.
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Message 4847 - Posted: 20 Jun 2009, 0:58:11 UTC
Last modified: 20 Jun 2009, 0:59:47 UTC

That 1.76 task doesn't show graphics. At start (when "Show graphics" clicked on) the window is empty - black, after 1sec it closes. Name of the task is visible.
Host ID 17945, WinXP x64.
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Message 4850 - Posted: 21 Jun 2009, 10:41:47 UTC

Next 1.76 task:
lr5_E_rama_map_all_ss_iter04_notsq_rlbd_2hng_SAVE_ALL_OUT_10709_81_0
ended with a validate error.

After rebooting my computer, this task (re)started from model 1 – according to the graphics.

Have a nice day,
Path7.
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svincent

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Message 4856 - Posted: 9 Jul 2009, 3:44:11 UTC

These tasks all failed on Mac in the same way after nearly an hour.

1534904
1534905
1534906

Watchdog active.
Hbond tripped: [2009- 7- 8 20:21:41:]
interpolate rotamers bin out of range: MET_p:NtermProteinFull 0 nan -61.3722 178.26 73.8396
22 27 10 11 2147483649 22 0 nan
ERROR:: Exit from: src/core/scoring/dunbrack/RotamericSingleResidueDunbrackLibrary.tmpl.hh line: 590
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
]]>

We need a new thread for 1.80.
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Message 4857 - Posted: 9 Jul 2009, 4:27:26 UTC - in response to Message 4856.  

These tasks all failed on Mac in the same way after nearly an hour.

1534904
1534905
1534906


We need a new thread for 1.80.


One was created on the 20/6/09, just look further down the list at the first thread after the 'stickied' threads.
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Message 4860 - Posted: 10 Jul 2009, 8:26:58 UTC - in response to Message 4845.  
Last modified: 10 Jul 2009, 8:28:14 UTC

Still have massive Validation problems on one of my Hosts (was asked to join it at RALPH after seeing the same problems with Rosetta) :

http://ralph.bakerlab.org/show_host_detail.php?hostid=18716

My best guess is that the installed Fedora 8 x86_64 has seen too many upgrades and requires a re-installation from scratch (downloading Fedora 11 x86_64 right now).

The only odd thing is, that this host never ran into any Validation problems on any other Project (?!)

If that doesn't help, I'm out of ideas. RAM was already exchanged, Vcore set back to Auto, cooling was improved (temps are well in the green).


...update :

System now underwent the following changes
- new CPU
- new RAM
- new OS
- HD freshly setup from scratch
- maximized cooling

...still validation failures (RALPH and Rosetta).

Apart from changing the case color or stuff like that, there's absolutely nothing I could do as this point.
For that reason I've stopped running RALPH and Rosetta alltogether, seems these are deep buried problems that started sometime 2 years ago when general stability and furthermost reliability was notably decreased under x86_64 Linux.

Sad to say that, but Rosetta just doesn't fulfill my min. stability requirements since those days...
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Message boards : RALPH@home bug list : Minirosetta 1.74/1.75



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