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Message boards : RALPH@home bug list : minirosetta 2.12

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Yifan Song

Joined: May 18 09
Posts: 13
ID: 7027
Credit: 0
RAC: 0
Message 5132 - Posted 6 May 2010 20:36:01 UTC

    Please post bug reports here!

    More updates for CASP!

    Profile [VENETO] boboviz

    Joined: Apr 9 08
    Posts: 513
    ID: 4205
    Credit: 747,232
    RAC: 1,238
    Message 5134 - Posted 11 May 2010 6:28:52 UTC - in response to Message 5132.

      What about 2.14??

      coturnix

      Joined: Jan 5 10
      Posts: 9
      ID: 15073
      Credit: 196,185
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      Message 5137 - Posted 14 May 2010 20:05:26 UTC

        Segmentation fault for both tasks: PID_benchmark_col9_1sq2.pdb.gz_native_11May2010_ProteinInterfaceDesign_14744_5

        Profile [VENETO] boboviz

        Joined: Apr 9 08
        Posts: 513
        ID: 4205
        Credit: 747,232
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        Message 5138 - Posted 17 May 2010 20:11:49 UTC

          I turn off the pc with 2 rhoA15May2010_ wu at 96% after 4 hours of running. When i turn on, the 2 wu restart from 5%. The 2 wu runs for another hour, then finish.Problems with checkpoint?

          Tonno

          Joined: Nov 23 06
          Posts: 16
          ID: 2269
          Credit: 49,841
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          Message 5141 - Posted 20 May 2010 4:57:10 UTC - in response to Message 5138.

            Error after few seconds: 1813746

            ERROR: unrecognized aa HOH
            ERROR:: Exit from: ..\..\src\core\io\pdb\file_data.cc line: 530
            BOINC:: Error reading and gzipping output datafile: default.out
            called boinc_finish

            Windows Vista, BOINC 6.10.45

            Profile [VENETO] boboviz

            Joined: Apr 9 08
            Posts: 513
            ID: 4205
            Credit: 747,232
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            Message 5142 - Posted 20 May 2010 5:28:39 UTC - in response to Message 5141.

              Last modified: 20 May 2010 5:29:27 UTC

              Same error on 1813924

              ERROR: unrecognized aa HOH
              ERROR:: Exit from: ..\..\src\core\io\pdb\file_data.cc line: 530
              BOINC:: Error reading and gzipping output datafile: default.out
              called boinc_finish

              Windows 7 Boinc 6.10.43

              Tonno

              Joined: Nov 23 06
              Posts: 16
              ID: 2269
              Credit: 49,841
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              Message 5143 - Posted 21 May 2010 6:52:15 UTC - in response to Message 5142.

                Some similar errors in other WUs, for example this one.

                ERROR: unrecognized aa CL
                ERROR:: Exit from: ..\..\src\core\io\pdb\file_data.cc line: 530
                BOINC:: Error reading and gzipping output datafile: default.out
                called boinc_finish

                Profile Conan
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                Joined: Feb 16 06
                Posts: 344
                ID: 145
                Credit: 1,325,239
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                Message 5144 - Posted 21 May 2010 12:50:26 UTC

                  This is for version 2.14,

                  Same error as reported above,

                  See 1813387
                  1815110
                  1815120



                  ____________

                  coturnix

                  Joined: Jan 5 10
                  Posts: 9
                  ID: 15073
                  Credit: 196,185
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                  Message 5156 - Posted 6 Jun 2010 10:36:07 UTC

                    ERROR: ERROR: Residue not supported by Placement coordinate constraint machinery
                    ERROR:: Exit from: src/protocols/ProteinInterfaceDesign/movers/PlaceUtils.cc line: 281

                    MDMX_3jzp_2p57_ProteinInterfaceDesign_4Jun2010_14813_2_0
                    MDMX_3jzp_2nr7_ProteinInterfaceDesign_4Jun2010_14813_2_0
                    MDMX_3jzp_2j6a_ProteinInterfaceDesign_4Jun2010_14813_2_0
                    MDMX_3jzp_2ihd_ProteinInterfaceDesign_4Jun2010_14813_2_0

                    Message boards : RALPH@home bug list : minirosetta 2.12


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