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Rosetta Mini Beta 3.19

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Message boards : RALPH@home bug list : Rosetta Mini Beta 3.19

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Profile [VENETO] boboviz

Joined: Apr 9 08
Posts: 517
ID: 4205
Credit: 750,753
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Message 5436 - Posted 20 Dec 2011 6:34:52 UTC

    New version is out. Bugs here.
    What's new?

    Profile [VENETO] boboviz

    Joined: Apr 9 08
    Posts: 517
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    Credit: 750,753
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    Message 5445 - Posted 17 Jan 2012 21:06:35 UTC

      All errors:

      2515624
      2515627


      ERROR: ERROR: FragmentIO: could not open file aaT0593.9mers
      ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
      BOINC:: Error reading and gzipping output datafile: default.out
      called boinc_finish

      Profile [VENETO] boboviz

      Joined: Apr 9 08
      Posts: 517
      ID: 4205
      Credit: 750,753
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      Message 5446 - Posted 24 Jan 2012 21:23:34 UTC

        2519515
        2519516
        2519517


        <core_client_version>7.0.8</core_client_version>
        <![CDATA[
        <message>
        Funzione non corretta. (0x1) - exit code 1 (0x1)
        </message>
        <stderr_txt>
        [2012- 1-24 21:34:31:] :: BOINC:: Initializing ... ok.
        [2012- 1-24 21:34:31:] :: BOINC :: boinc_init()
        BOINC:: Setting up shared resources ... ok.
        BOINC:: Setting up semaphores ... ok.
        BOINC:: Updating status ... ok.
        BOINC:: Registering timer callback... ok.
        BOINC:: Worker initialized successfully.
        Registering options..
        Registered extra options.
        Initializing broker options ...
        Registered extra options.
        Initializing core...
        Initializing options.... ok
        Options::initialize()
        Options::adding_options()
        Options::initialize() Check specs.
        Options::initialize() End reached
        ERROR: Illegal value specified for option -run:protocol : star

        Snagletooth

        Joined: May 4 07
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        Message 5447 - Posted 28 Jan 2012 15:33:14 UTC

          Looks like a bad batch:

          2XY2_boinc_01af25c3445c8a72c5666274d71d0bc4_abinitio_cmiles_IGNORE_THE_REST_16338_6

          ERROR: unrecognized aa NAG
          ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 643
          BOINC:: Error reading and gzipping output datafile: default.out
          called boinc_finish


          2XZR_boinc_2XZR_abinitio_a14fd156c09cffe3e75b353e016d12e9_abinitio_cmiles_IGNORE_THE_REST_16356_7

          ERROR: ERROR: FragmentIO: could not open file aa2XZR.9mers
          ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233
          BOINC:: Error reading and gzipping output datafile: default.out
          called boinc_finish


          Best,
          Snags

          Profile [VENETO] boboviz

          Joined: Apr 9 08
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          Credit: 750,753
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          Message 5448 - Posted 30 Jan 2012 9:27:03 UTC

            2522024
            2522026
            2522022


            Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip
            Setting database description ...
            Setting up checkpointing ...
            Setting up graphics native ...
            Setting up folding (abrelax) ...

            ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
            ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
            BOINC:: Error reading and gzipping output datafile: default.out
            called boinc_finish

            Profile Conan
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            Message 5449 - Posted 31 Jan 2012 8:10:39 UTC - in response to Message 5448.

              2522024
              2522026
              2522022


              Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip
              Setting database description ...
              Setting up checkpointing ...
              Setting up graphics native ...
              Setting up folding (abrelax) ...

              ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
              ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
              BOINC:: Error reading and gzipping output datafile: default.out
              called boinc_finish


              Same Error for me on this WU

              ____________

              Profile Conan
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              Message 5450 - Posted 2 Feb 2012 4:45:16 UTC

                Last modified: 2 Feb 2012 4:47:01 UTC

                Getting Validate Errors on ALL "ferredoxin" Work Unit types.

                See 2522556
                2522676
                2522683
                2522907

                I have six of these still running but I doubt they will validate.

                Conan
                ____________

                TPCBF

                Joined: Jun 20 11
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                Message 5451 - Posted 2 Feb 2012 5:39:33 UTC - in response to Message 5450.

                  Getting Validate Errors on ALL "ferredoxin" Work Unit types.

                  See 2522556
                  2522676
                  2522683
                  2522907

                  I have six of these still running but I doubt they will validate.

                  Conan
                  I just finshed one of those and it immediately validated just fine (it was so far also the only one I got on the one host that I have RALPH@home runnig)

                  Ralf

                  Profile Conan
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                  Message 5452 - Posted 2 Feb 2012 10:07:02 UTC - in response to Message 5450.

                    Getting Validate Errors on ALL "ferredoxin" Work Unit types.

                    See 2522556
                    2522676
                    2522683
                    2522907

                    I have six of these still running but I doubt they will validate.

                    Conan


                    Well a couple did validate but the rest did not
                    Validate Errors on 2522936
                    2522958
                    2522951

                    Also had this error

                    ERROR: unknown atom_name: ASN H
                    ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 1673
                    BOINC:: Error reading and gzipping output datafile: default.out

                    On This WU
                    It was a 2FTX work unit type.

                    Plus this error

                    ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
                    ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
                    BOINC:: Error reading and gzipping output datafile: default.out

                    On This WU

                    Conan
                    ____________

                    Profile [VENETO] boboviz

                    Joined: Apr 9 08
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                    Credit: 750,753
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                    Message 5456 - Posted 7 Feb 2012 20:35:43 UTC

                      2523917


                      Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev46494.zip
                      Unpacking WU data ...
                      Unpacking data: ../../projects/ralph.bakerlab.org/test3_data.zip
                      Setting database description ...
                      Setting up checkpointing ...
                      Setting up graphics native ...
                      Setting up folding (abrelax) ...
                      ERROR: Value of inactive option accessed: -in:file:frag9

                      Profile [VENETO] boboviz

                      Joined: Apr 9 08
                      Posts: 517
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                      Credit: 750,753
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                      Message 5459 - Posted 11 Feb 2012 2:40:52 UTC

                        2524518
                        2524519
                        2524517

                        After few seconds on win 7:

                        ERROR: Hybridize is not known to the MoverFactory. Was it registered via a MoverRegistrator in one of the init.cc files (devel/init.cc or protocols/init.cc)?
                        ERROR:: Exit from: ..\..\..\src\protocols\moves\MoverFactory.cc line: 99
                        BOINC:: Error reading and gzipping output datafile: default.out
                        called boinc_finish

                        Profile [VENETO] boboviz

                        Joined: Apr 9 08
                        Posts: 517
                        ID: 4205
                        Credit: 750,753
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                        Message 5460 - Posted 11 Feb 2012 8:38:54 UTC

                          All ProteinDesignInterface wus have the old problem with graphic....

                          Profile Conan
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                          Message 5461 - Posted 12 Feb 2012 23:02:44 UTC

                            Every Work Unit I ran on my Linux machines ran for over 8 to 9 hours on a 6 hour preference.
                            Reported time was 6 hours.
                            Where is the other 3 hours?
                            Windows ran for the reported time.

                            Seems a bit strange.

                            Conan
                            ____________

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