Rosetta Mini Beta 3.19

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Profile [VENETO] boboviz

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Message 5436 - Posted: 20 Dec 2011, 6:34:52 UTC

New version is out. Bugs here.
What's new?
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Profile [VENETO] boboviz

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Message 5445 - Posted: 17 Jan 2012, 21:06:35 UTC

All errors:

2515624
2515627


ERROR: ERROR: FragmentIO: could not open file aaT0593.9mers
ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile [VENETO] boboviz

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Message 5446 - Posted: 24 Jan 2012, 21:23:34 UTC

2519515
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2519517


<core_client_version>7.0.8</core_client_version>
<![CDATA[
<message>
Funzione non corretta. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
[2012- 1-24 21:34:31:] :: BOINC:: Initializing ... ok.
[2012- 1-24 21:34:31:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
ERROR: Illegal value specified for option -run:protocol : star
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Snagletooth

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Message 5447 - Posted: 28 Jan 2012, 15:33:14 UTC

Looks like a bad batch:

2XY2_boinc_01af25c3445c8a72c5666274d71d0bc4_abinitio_cmiles_IGNORE_THE_REST_16338_6

ERROR: unrecognized aa NAG
ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 643
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


2XZR_boinc_2XZR_abinitio_a14fd156c09cffe3e75b353e016d12e9_abinitio_cmiles_IGNORE_THE_REST_16356_7

ERROR: ERROR: FragmentIO: could not open file aa2XZR.9mers
ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Best,
Snags
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Message 5448 - Posted: 30 Jan 2012, 9:27:03 UTC

2522024
2522026
2522022


Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...

ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5449 - Posted: 31 Jan 2012, 8:10:39 UTC - in response to Message 5448.  

2522024
2522026
2522022


Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...

ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Same Error for me on this WU

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Message 5450 - Posted: 2 Feb 2012, 4:45:16 UTC
Last modified: 2 Feb 2012, 4:47:01 UTC

Getting Validate Errors on ALL "ferredoxin" Work Unit types.

See 2522556
2522676
2522683
2522907

I have six of these still running but I doubt they will validate.

Conan
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TPCBF

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Message 5451 - Posted: 2 Feb 2012, 5:39:33 UTC - in response to Message 5450.  

Getting Validate Errors on ALL "ferredoxin" Work Unit types.

See 2522556
2522676
2522683
2522907

I have six of these still running but I doubt they will validate.

Conan
I just finshed one of those and it immediately validated just fine (it was so far also the only one I got on the one host that I have RALPH@home runnig)

Ralf
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Profile Conan
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Message 5452 - Posted: 2 Feb 2012, 10:07:02 UTC - in response to Message 5450.  

Getting Validate Errors on ALL "ferredoxin" Work Unit types.

See 2522556
2522676
2522683
2522907

I have six of these still running but I doubt they will validate.

Conan


Well a couple did validate but the rest did not
Validate Errors on 2522936
2522958
2522951

Also had this error

ERROR: unknown atom_name: ASN H
ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 1673
BOINC:: Error reading and gzipping output datafile: default.out

On This WU
It was a 2FTX work unit type.

Plus this error

ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\ConstraintIO.cc line: 471
BOINC:: Error reading and gzipping output datafile: default.out

On This WU

Conan
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Message 5456 - Posted: 7 Feb 2012, 20:35:43 UTC

2523917


Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev46494.zip
Unpacking WU data ...
Unpacking data: ../../projects/ralph.bakerlab.org/test3_data.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
ERROR: Value of inactive option accessed: -in:file:frag9
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Message 5459 - Posted: 11 Feb 2012, 2:40:52 UTC

2524518
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2524517

After few seconds on win 7:

ERROR: Hybridize is not known to the MoverFactory. Was it registered via a MoverRegistrator in one of the init.cc files (devel/init.cc or protocols/init.cc)?
ERROR:: Exit from: ..\..\..\src\protocols\moves\MoverFactory.cc line: 99
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5460 - Posted: 11 Feb 2012, 8:38:54 UTC

All ProteinDesignInterface wus have the old problem with graphic....
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Message 5461 - Posted: 12 Feb 2012, 23:02:44 UTC

Every Work Unit I ran on my Linux machines ran for over 8 to 9 hours on a 6 hour preference.
Reported time was 6 hours.
Where is the other 3 hours?
Windows ran for the reported time.

Seems a bit strange.

Conan
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