RosettaMini Beta 3.24

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Profile [VENETO] boboviz

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Message 5477 - Posted: 14 Mar 2012, 14:11:25 UTC

New version is out, boys...
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Profile [VENETO] boboviz

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Message 5478 - Posted: 14 Mar 2012, 20:41:26 UTC

2613022

Starting watchdog...
Watchdog active.
dof_atom1 atomno= 3 rsd= 1
atom1 atomno= 1 rsd= 1
atom2 atomno= 2 rsd= 1
atom3 atomno= 5 rsd= 1
atom4 atomno= 6 rsd= 1
THETA1 1.#QNAN
THETA3 1.#QNAN
PHI2 2.14542

ERROR: AtomTree::torsion_angle_dof_id: angle range error
ERROR:: Exit from: ..\..\..\src\core\kinematics\AtomTree.cc line: 771
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5479 - Posted: 15 Mar 2012, 7:07:22 UTC

Had an error on this one2614017

Process exited with code 193 (0xc1, -63)

SIGSEGV: segmentation violation
Stack trace (18 frames):
[0xa858057]
[0xf771b400]
[0xa55e7bf]
[0x9b30785]
[0x9b16cff]
[0x9b1db00]
[0x9d24392]
[0x9bd61a9]
[0x8a84a27]
[0x8a3a683]
[0x93c09a0]
[0x93c336a]
[0x954a627]
[0x95b06f5]
[0x95adf25]
[0x80547ed]
[0xa8e7f78]
[0x8048131]

Conan
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Profile [VENETO] boboviz

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Message 5480 - Posted: 15 Mar 2012, 19:35:45 UTC

2609531

Starting watchdog...
Watchdog active.
Hbond tripped: [2012- 3-15 11:33:52:]
bounds error (radius = -1.#IND, val = -1.#IND), def = SOGFUNC 4 6.401 4.665 0.016 9.375 3.973 0.048 9.521 4.214 0.036 18.3 7.3 0.9

ERROR: Fatal SOGFunc_Impl error.
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\SOGFunc_Impl.cc line: 181
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

</stderr_txt>
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Profile [VENETO] boboviz

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Message 5481 - Posted: 21 Mar 2012, 11:39:27 UTC

2621729

Hbond tripped: [2012- 3-21 12:15:20:]
bounds error (radius = -1.#IND, val = -1.#IND), def = SOGFUNC 2 5.84 2.956 0.153 18.3 7.3 0.847

ERROR: Fatal SOGFunc_Impl error.
ERROR:: Exit from: ..\..\..\src\core\scoring\constraints\SOGFunc_Impl.cc line: 181
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile [VENETO] boboviz

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Message 5485 - Posted: 27 Mar 2012, 10:24:11 UTC

2622618

Setting WU description ...
Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev47790.zip
Unpacking WU data ...
Unpacking data: ../../projects/ralph.bakerlab.org/test_data.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...

ERROR: ERROR: FragmentIO: could not open file test_aa0000109_05.200_v1_3
ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile [VENETO] boboviz

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Message 5486 - Posted: 27 Mar 2012, 12:05:22 UTC

Validate error on 2622620

Starting watchdog...
Watchdog active.
======================================================
DONE :: 99 starting structures 2803.54 cpu seconds
This process generated 99 decoys from 99 attempts
======================================================
BOINC :: WS_max 1.00688e+008

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
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Snagletooth

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Message 5487 - Posted: 27 Mar 2012, 12:07:41 UTC

test_pose_BB_perturbation_JOBID_SAVE_ALL_OUT_17702_91_0

process exited with code 1 (0x1, -255)

ERROR: Cannot open PDB file "pose_BB"
ERROR:: Exit from: src/core/import_pose/import_pose.cc line: 184
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish



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Profile [VENETO] boboviz

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Message 5488 - Posted: 27 Mar 2012, 19:46:52 UTC - in response to Message 5485.  

2622618

ERROR: ERROR: FragmentIO: could not open file test_aa0000109_05.200_v1_3
ERROR:: Exit from: ..\..\..\src\core\fragment\FragmentIO.cc line: 233
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Today, bad day. Another wu with same error (on win7)

2624062

And 2624064 with this error

ERROR: Cannot open PDB file "pose_BB"
ERROR:: Exit from: ..\..\..\src\core\import_pose\import_pose.cc line: 184
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Profile [VENETO] boboviz

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Message 5489 - Posted: 31 Mar 2012, 12:04:38 UTC

All errors on win 7 (32 and 64 bit):
2625843
2625844
2625845
2625846


ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Please, stop this batch
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Profile Conan
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Message 5490 - Posted: 31 Mar 2012, 12:52:39 UTC - in response to Message 5489.  

All errors on win 7 (32 and 64 bit):
2625843
2625844
2625845
2625846


ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish


Please, stop this batch


Same Error on Linux 64 bit, ALL work units Error out.

ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 162
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish

See the following Work Units
2626834
2626869
2626908
2626909
2626975
2627013
2627086

Conan

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Message 5491 - Posted: 31 Mar 2012, 14:09:56 UTC

Same here windows 7 and linux both 64 bits. All crashed with that same error.

regards
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Monty

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Message 5492 - Posted: 31 Mar 2012, 14:39:58 UTC

And here on a Vista Home Premium 32-Bit machine:

ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 162
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5493 - Posted: 31 Mar 2012, 20:40:53 UTC - in response to Message 5492.  

Here is another type on the same machine:

ERROR: Cannot open PDB file "pose_BB"
ERROR:: Exit from: ..\..\..\src\core\import_pose\import_pose.cc line: 184
BOINC:: Error reading and gzipping output datafile: default.out
called boinc_finish
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Message 5494 - Posted: 31 Mar 2012, 21:05:54 UTC - in response to Message 5490.  

Same Error on Linux 64 bit, ALL work units Error out.

ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
Likewise, getting the same error on all WUs, running Windows XP Pro SP3 32Bit...

Ralf
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Message 5496 - Posted: 1 Apr 2012, 7:18:45 UTC

I repeat: please, stop this batch!!
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Message 5497 - Posted: 1 Apr 2012, 12:08:14 UTC

t7_fd.c.82-85.i.3-74_abinitio_SAVE_ALL_OUT_17707_xxx

All of these are failing immediately on my mac with:

ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 162
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Message 5498 - Posted: 1 Apr 2012, 20:15:39 UTC - in response to Message 5494.  

Same Error on Linux 64 bit, ALL work units Error out.

ERROR: in::file::boinc_wu_zip design_62_data.zip does not exist!
Likewise, getting the same error on all WUs, running Windows XP Pro SP3 32Bit...

Ralf
Got 4 more of those WUs this morning, same result, all terminated within seconds, with the same error message...

:-(

Ralf
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Message 5499 - Posted: 1 Apr 2012, 23:34:27 UTC

Well out of dozens of failures I managed to have just the ONE SUCCESS

2633954 is successful

Conan
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Message 5500 - Posted: 2 Apr 2012, 9:52:53 UTC

WTF is going on.

Over the last few days every task running version 3.24 fails in less than 30 seconds. Now some inane message about a limit on the number of tasks is showing up. Hey RALPH that's your fault not mine.

Please abort this batch and restore the task quotas ASAP.
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Message boards : RALPH@home bug list : RosettaMini Beta 3.24



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