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Profile dekim
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Message 5861 - Posted 28 Aug 2015 17:21:24 UTC

    Last modified: 28 Aug 2015 17:41:46 UTC

    This application update includes an improved and optimized energy function developed mainly by Frank DiMaio and Hahnbeom Park, and others which improves on all scientific benchmarks. This is an exciting development which we would like to push out and test further. This update also includes new protocols since it uses current Rosetta source. At this point I have included a 64bit linux version but did not compile with SSE optimizations as it will require more testing. I did turn on SSE for the windows app.

    Please post bugs/issues here regarding the 3.61 minirosetta_beta app update.
    ____________

    Chilean
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    Message 5864 - Posted 28 Aug 2015 19:28:35 UTC

      Last modified: 28 Aug 2015 19:29:05 UTC

      Awesome! I have my i7 fully stocked on ralph WUs.

      So far 3 errors, 2 of them failed immediately, the other @ 1000 secs. I'm currently running 6 WUs around the 25 min mark (1600 secs) so far with no errors though.

      WUs that failed:
      http://ralph.bakerlab.org/workunit.php?wuid=3003399
      http://ralph.bakerlab.org/workunit.php?wuid=3006069
      http://ralph.bakerlab.org/workunit.php?wuid=3006096

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      Message 5865 - Posted 28 Aug 2015 20:06:37 UTC

        Just finished 3 WUs successfully, but there are plenty that fail right at the start:

        <core_client_version>7.6.6</core_client_version>
        <![CDATA[
        <message>
        (unknown error) - exit code -1 (0xffffffff)
        </message>
        <stderr_txt>
        [2015- 8-28 16:50:38:] :: BOINC:: Initializing ... ok.
        [2015- 8-28 16:50:38:] :: BOINC :: boinc_init()
        BOINC:: Setting up shared resources ... ok.
        BOINC:: Setting up semaphores ... ok.
        BOINC:: Updating status ... ok.
        BOINC:: Registering timer callback... ok.
        BOINC:: Worker initialized successfully.
        command: projects/ralph.bakerlab.org/minirosetta_beta_3.61_windows_x86_64.exe -run:protocol relax -ex1 -ex2aro -in:file:boinc_wu_zip FFF_939e816d73e5d4a3e6faf001ad588d96_hh5_Wed_Jun__3_15_28_03_PDT_2015.zip -in:file:s 00001.pdb -in:file:native 00001.pdb -in:file:fullatom -relax::default_repeats 15 -out:file:silent default.out -out:file:silent_struct_type score -silent_gz -relax:cyclic_peptide -mute all -nstruct 10000 -cpu_run_time 3600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3184233
        Registering options..
        Registered extra options.
        Initializing broker options ...
        Registered extra options.
        Initializing core...
        Initializing options.... ok
        Options::initialize()
        Options::adding_options()
        Options::initialize() Check specs.
        Options::initialize() End reached
        ERROR: Option matching -relax:cyclic_peptide not found in command line top-level context

        </stderr_txt>
        ]]>

        Felix Kaeufer

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        Message 5866 - Posted 29 Aug 2015 8:47:11 UTC

          So far I received two work units. One of them finished correctly, the other one failed with the following error:

          ERROR: Option matching -relax:cyclic_peptide not found in command line top-level context
          .

          Dr. Merkwürdigliebe

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          Message 5867 - Posted 29 Aug 2015 9:33:07 UTC - in response to Message 5866.

            Yeah, I received this error, too.



            Task ID 3404721

            <core_client_version>7.4.23</core_client_version>
            <![CDATA[
            <message>
            process exited with code 255 (0xff, -1)
            </message>
            <stderr_txt>
            [2015- 8-29 11:29:13:] :: BOINC:: Initializing ... ok.
            [2015- 8-29 11:29:13:] :: BOINC :: boinc_init()
            BOINC:: Setting up shared resources ... ok.
            BOINC:: Setting up semaphores ... ok.
            BOINC:: Updating status ... ok.
            BOINC:: Registering timer callback... ok.
            BOINC:: Worker initialized successfully.
            command: ../../projects/ralph.bakerlab.org/minirosetta_beta_3.61_x86_64-pc-linux-gnu -run:protocol relax -ex1 -ex2aro -in:file:boinc_wu_zip FFF_939e816d73e5d4a3e6faf001ad588d96_hh5_Wed_Jun__3_15_28_03_PDT_2015.zip -in:file:s 00001.pdb -in:file:native 00001.pdb -in:file:fullatom -relax::default_repeats 15 -out:file:silent default.out -out:file:silent_struct_type score -silent_gz -relax:cyclic_peptide -mute all -nstruct 10000 -cpu_run_time 3600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3184272
            Registering options..
            Registered extra options.
            Initializing broker options ...
            Registered extra options.
            Initializing core...
            Initializing options.... ok
            Options::initialize()
            Options::adding_options()
            Options::initialize() Check specs.
            Options::initialize() End reached
            ERROR: Option matching -relax:cyclic_peptide not found in command line top-level context

            </stderr_txt>
            ]]>

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            Message 5868 - Posted 29 Aug 2015 16:48:44 UTC

              Last modified: 29 Aug 2015 16:52:16 UTC

              Yup. Most are good on my linux hosts, with a handful of immediate compute errors.

              stderr out

              <core_client_version>7.4.22</core_client_version>
              <![CDATA[
              <message>
              process exited with code 255 (0xff, -1)
              </message>
              <stderr_txt>
              ...
              command: ../../projects/ralph.bakerlab.org/minirosetta_beta_3.61_x86_64-pc-linux-gnu -run:protocol relax -ex1 -ex2aro -in:file:boinc_wu_zip FFF_f9e68a71c8f649cfc9b9f525ee9b6a38_hh9_gb_Wed_Jun_10_18_48_55_PDT_2015.zip -in:file:s 00001.pdb -in:file:native 00001.pdb -in:file:fullatom -relax::default_repeats 15 -relax:cyclic_peptide -score::weights talaris2013_cst_modified.wts -out:file:silent default.out -out:file:silent_struct_type score -silent_gz -mute all -nstruct 10000 -cpu_run_time 3600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 3171761
              Registering options..
              ERROR: Option matching -relax:cyclic_peptide not found in command line top-level context


              My guess is something strange in the configuration on those particular WU's. Maybe the -relax:cyclic_peptide option is missing a required parameter there?

              Profile [VENETO] boboviz

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              Message 5877 - Posted 31 Aug 2015 8:10:46 UTC - in response to Message 5861.

                At this point I have included a 64bit linux version but did not compile with SSE optimizations as it will require more testing. I did turn on SSE for the windows app.


                From rosetta forum:
                1) Please, insert brief description of app in Applications Page, like this.


                Will do.

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                Message 5880 - Posted 1 Sep 2015 21:53:15 UTC

                  For the 3.62 update, I reverted the windows application back to the 32bit non-sse build, and also reverted the linux application to the 32bit build (for the 64bit apps). There was a significant fraction of errors which prompted the change. We will do another update soon related to the "Option matching -relax:cyclic_peptide not found in command line top-level context" errors.
                  ____________

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                  Message 5881 - Posted 2 Sep 2015 0:06:10 UTC - in response to Message 5880.

                    For the 3.62 update, I reverted the windows application back to the 32bit non-sse build, and also reverted the linux application to the 32bit build (for the 64bit apps). There was a significant fraction of errors which prompted the change. We will do another update soon related to the "Option matching -relax:cyclic_peptide not found in command line top-level context" errors.


                    Errors in addition to the "Option matching -relax:cyclic_peptide not found in command line top-level context" ??

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                    Message 5882 - Posted 2 Sep 2015 0:16:16 UTC

                      So far, so good on 64-bit Linux.

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                      Message 5883 - Posted 2 Sep 2015 4:58:05 UTC - in response to Message 5880.

                        Last modified: 2 Sep 2015 4:58:24 UTC

                        For the 3.62 update, I reverted the windows application back to the 32bit non-sse build, and also reverted the linux application to the 32bit build (for the 64bit apps). There was a significant fraction of errors which prompted the change. We will do another update soon related to the "Option matching -relax:cyclic_peptide not found in command line top-level context" errors.


                        on Linux-64 got some

                        ERROR: Option matching -abinitio:cyclic_peptide not found in command line top-level context

                        where the error string is a little bit different to yours
                        eg this workunit

                        Profile [VENETO] boboviz

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                        Message 5884 - Posted 2 Sep 2015 9:22:16 UTC - in response to Message 5883.

                          Last modified: 2 Sep 2015 9:22:33 UTC

                          on Linux-64 got some

                          ERROR: Option matching -abinitio:cyclic_peptide not found in command line top-level context

                          where the error string is a little bit different to yours
                          eg this workunit


                          Seems to be the same error of 3.54 version

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                          Message 5885 - Posted 3 Sep 2015 9:29:55 UTC - in response to Message 5861.

                            Hello,

                            As a general software engineering/debugging principal, I would not recommend mixing cpu optimizations and new code in the same build. If a WU fails, what caused it to fail? The new code or one of the optimizations?

                            Instead, make as many branches as you need off the branch of the latest stable build in production, and start testing the optimizations one at a time. Test against work units that have already been run successfully on the stable code base without the optimizations.

                            By following this procedure, you will only be testing one change at a time, for instance enabling SSE or SSE2. So, debugging will be far more straightforward in the case of any WU failures.

                            Cheers,

                            Ed



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                            Message 5886 - Posted 3 Sep 2015 20:48:41 UTC - in response to Message 5885.

                              The protocol code for the majority of jobs (and all the test jobs) hasn't changed. BUT, for this cyclic peptide error, the developer did not check his code into the main source repo as he should have long ago. In an effort to save time a while ago, we incorporated his code before he checked it in under the understanding he would check it in soon after, which he didn't. But on a positive note, he is busy trying to make and characterize his cyclic peptide designs now.
                              ____________

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                              Message 5887 - Posted 5 Sep 2015 4:39:14 UTC - in response to Message 5886.

                                The protocol code for the majority of jobs (and all the test jobs) hasn't changed. BUT, for this cyclic peptide error, the developer did not check his code into the main source repo as he should have long ago. In an effort to save time a while ago, we incorporated his code before he checked it in under the understanding he would check it in soon after, which he didn't. But on a positive note, he is busy trying to make and characterize his cyclic peptide designs now.


                                What kind of errors was the SSE extension giving then?

                                Remember that improving performance directly improves scientific benchmarks. There is lots of compute power in RALPH to bug-out any problems that come from using SSE/SSE2 (thought technically there shouldn't be any, since 99% of users are using SSE2 capable CPUs).

                                Ed

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                                Message 5888 - Posted 5 Sep 2015 8:36:01 UTC - in response to Message 5886.

                                  Thanks, David.
                                  So, to be clear, would the following release notes reflect the version of 3.62 that went to production?

                                  Improvements:
                                  - Improved and optimized energy function developed mainly by Frank DiMaio and Hahnbeom Park and others which improves on all scientific benchmarks
                                  - This update also includes new protocols since it uses current Rosetta source (Ed - What are the *new* protocols that were not in 3.59?)

                                  Not Changed:
                                  - reverted the windows application back to the 32bit non-sse build
                                  - reverted the linux application to the 32bit build (for the 64bit apps), non-sse build

                                  Profile [VENETO] boboviz

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                                  Message 5889 - Posted 9 Sep 2015 11:46:52 UTC - in response to Message 5888.

                                    Not Changed:
                                    - reverted the windows application back to the 32bit non-sse build
                                    - reverted the linux application to the 32bit build (for the 64bit apps), non-sse build


                                    I cannot understand if rosetta's admins are working together with rjs5, sesef or other volunteers expert on optimization.

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                                    Message 5892 - Posted 8 Oct 2015 21:59:00 UTC

                                      Any news regarding the 3.63 version?
                                      ____________

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                                      Message 5893 - Posted 9 Oct 2015 7:01:46 UTC - in response to Message 5892.

                                        Any news regarding the 3.63 version?


                                        New exe, new screensaver, new db.
                                        Optimizations or only bugfixes?

                                        Dirk Broer

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                                        Message 5894 - Posted 9 Oct 2015 8:06:12 UTC

                                          Last modified: 9 Oct 2015 8:06:51 UTC

                                          In Linux libglut.so.3 errors all over the place, perhaps looking in wrong directory?

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                                          Message 5895 - Posted 9 Oct 2015 13:52:23 UTC - in response to Message 5887.

                                            There is lots of compute power in RALPH to bug-out any problems that come from using SSE/SSE2 (thought technically there shouldn't be any, since 99% of users are using SSE2 capable CPUs).


                                            I would extend that to 99.9%
                                            ____________

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                                            Message 5896 - Posted 9 Oct 2015 14:00:57 UTC - in response to Message 5895.

                                              Eliminating an non-SSE2 version of Rosetta would eliminate Pentium 3 and Athlon XP or earlier CPUs, so I'd guess less than 0.1% of output.
                                              ____________

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                                              Message 5897 - Posted 9 Oct 2015 18:34:14 UTC - in response to Message 5894.

                                                In Linux libglut.so.3 errors all over the place, perhaps looking in wrong directory?


                                                me too :(

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                                                Message 5898 - Posted 9 Oct 2015 20:32:49 UTC

                                                  I just updated to 3.64. This includes a fix for libglut.

                                                  This update includes a bug fix for our patch dock protocol which fixes the output format which was causing validation errors. It also includes support for much smaller fragment files which we will integrate into our pipelines to significantly decrease bandwidth usage. Since this is a full update to the latest Rosetta source, it may also include new protocols and other various updates.

                                                  I've been too busy to look into optimizations. We do have one volunteer helping us out however. I'll keep you all posted if anything develops.
                                                  ____________

                                                  Dr. Merkwürdigliebe

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                                                  Message 5899 - Posted 9 Oct 2015 21:03:06 UTC - in response to Message 5898.

                                                    Last modified: 9 Oct 2015 21:28:21 UTC

                                                    All of my jobs are failing....

                                                    EDIT: ../../projects/ralph.bakerlab.org/minirosetta_beta_3.64_x86_64-pc-linux-gnu: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory

                                                    Oh, for crying out loud, please provide a 64-Bit binary.

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                                                    Message 5900 - Posted 9 Oct 2015 21:27:43 UTC - in response to Message 5896.

                                                      Last modified: 9 Oct 2015 21:29:30 UTC

                                                      Eliminating an non-SSE2 version of Rosetta would eliminate Pentium 3 and Athlon XP or earlier CPUs, so I'd guess less than 0.1% of output.


                                                      And eliminating an non-SSE3 version of Rosetta would also eliminate Pentium 3, Athlon XP or earlier CPUs plus the very first Athlon64 and Opteron64 CPUs (pre Venice Stepping E3 and San Diego Stepping E4), so I'd guess less than 0.2% of output.
                                                      ____________

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                                                      Message 5901 - Posted 9 Oct 2015 21:35:31 UTC - in response to Message 5899.

                                                        I'll test a 64bit linux build. Should come up shortly.
                                                        ____________

                                                        Dr. Merkwürdigliebe

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                                                        Message 5902 - Posted 9 Oct 2015 21:48:42 UTC - in response to Message 5901.

                                                          I didn't mean to be rude, it's just when you install the 32-Bit version of libglu1-mesa, apt-get will install >50MB worth of 32-Bit libraries as dependencies.

                                                          That kinda sucks. I installed the libraries but I can't get more jobs from ralph because "Fr 09 Okt 2015 23:45:32 CEST | ralph@home | (reached daily quota of 8 results)"

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                                                          Message 5903 - Posted 9 Oct 2015 23:05:33 UTC - in response to Message 5902.

                                                            I just updated the 64bit linux app. Please let me know how it goes as there might still be compatibility issues with the glut, GL, GLU libraries etc...
                                                            ____________

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                                                            Message 5904 - Posted 10 Oct 2015 3:51:15 UTC

                                                              Got a bunch of WUs today(Beta 3.63, on Windows 8.1/64) and while the first one finished fine, with the rest it seems the "same old same old" starts:
                                                              They will run for a while, then CPU time will stop increasing, at some point the job still shows "running" but no ETA time (just "-----") until they will crap out with a "Computation error" after blocking anything else on the host for hours, and no credit given either.

                                                              Again, these are Beta 3.63 WUs, on Windows 8.1/64, 8GB of RAM, BOINC agent v7.6.9...

                                                              Ralf

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                                                              Message 5905 - Posted 10 Oct 2015 7:49:51 UTC - in response to Message 5903.

                                                                I just updated the 64bit linux app. Please let me know how it goes as there might still be compatibility issues with the glut, GL, GLU libraries etc...


                                                                3.65 is working, great!

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                                                                Message 5906 - Posted 10 Oct 2015 10:54:25 UTC

                                                                  Yeah, looks good.

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                                                                  Message 5909 - Posted 12 Oct 2015 7:35:00 UTC - in response to Message 5906.

                                                                    Yeah, looks good.


                                                                    +1
                                                                    Ready for rosetta.

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                                                                    Message 5911 - Posted 12 Oct 2015 17:50:03 UTC - in response to Message 5904.

                                                                      Got a bunch of WUs today(Beta 3.63, on Windows 8.1/64) and while the first one finished fine, with the rest it seems the "same old same old" starts:
                                                                      They will run for a while, then CPU time will stop increasing, at some point the job still shows "running" but no ETA time (just "-----") until they will crap out with a "Computation error" after blocking anything else on the host for hours, and no credit given either.

                                                                      Again, these are Beta 3.63 WUs, on Windows 8.1/64, 8GB of RAM, BOINC agent v7.6.9...

                                                                      Ralf


                                                                      does resetting the project help?
                                                                      ____________

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                                                                      Message 5912 - Posted 12 Oct 2015 21:45:24 UTC - in response to Message 5911.

                                                                        Got a bunch of WUs today(Beta 3.63, on Windows 8.1/64) and while the first one finished fine, with the rest it seems the "same old same old" starts:
                                                                        They will run for a while, then CPU time will stop increasing, at some point the job still shows "running" but no ETA time (just "-----") until they will crap out with a "Computation error" after blocking anything else on the host for hours, and no credit given either.

                                                                        Again, these are Beta 3.63 WUs, on Windows 8.1/64, 8GB of RAM, BOINC agent v7.6.9...

                                                                        Ralf


                                                                        does resetting the project help?
                                                                        I did not get a chance to do that, at least this time around. In the past, I mentioned this a few times that I had the same issue, but with each batch of WUs, it's the same spiel. Out of a dozen or so beta WUs, taking up days of compute time, blocking other projects, only two WUs finished and got credited.
                                                                        I really don't know if any of the developers are actually paying attention, at least none of them seems to be posting in here... :-(

                                                                        Ralf

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                                                                        Message 5913 - Posted 12 Oct 2015 21:51:39 UTC - in response to Message 5912.

                                                                          You just replied to one!
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                                                                          Message 5916 - Posted 17 Oct 2015 0:40:36 UTC

                                                                            Nothing but validate errors on the new batch 3.64 T0559_indexed_frags_test_...

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                                                                            Message 5918 - Posted 20 Oct 2015 5:32:44 UTC

                                                                              Why 3.64 if 3.65 is out?

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                                                                              Message 5919 - Posted 20 Oct 2015 10:13:09 UTC

                                                                                Good morning to all...

                                                                                I have three 3.64 tasks at 100% after more than five hours, but not closing. Remaining time is ---, but they continue running. Please, should I keep them or abort them?

                                                                                Many thanks,
                                                                                Valter.

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                                                                                Message 5920 - Posted 20 Oct 2015 10:37:47 UTC - in response to Message 5919.

                                                                                  I would exit BOINC and restart it in that situation rather than aborting them.
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                                                                                  Message 5921 - Posted 20 Oct 2015 11:48:28 UTC - in response to Message 5920.

                                                                                    I would exit BOINC and restart it in that situation rather than aborting them.


                                                                                    Is that because there is the possibility for them to complete and you get the information about the run and the cruncher gets the credit?

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                                                                                    Message 5922 - Posted 20 Oct 2015 11:50:50 UTC - in response to Message 5921.

                                                                                      I would exit BOINC and restart it in that situation rather than aborting them.


                                                                                      Is that because there is the possibility for them to complete and you get the information about the run and the cruncher gets the credit?


                                                                                      Yes exactly, although flagging it up as an issue is useful as it obviously shouldn't happen and something needs fixing (whether that's in Rosetta or BOINC or elsewhere).
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                                                                                      Message 5923 - Posted 21 Oct 2015 8:18:24 UTC - in response to Message 5920.

                                                                                        Many thanks. I did that yesterday (exited BOINC and restarted it) and it worked. The jobs were concluded, uploaded and received credit.

                                                                                        Immediately after I restarted BOINC, the elapsed time of both jobs decreased from 5 hours to about 56 minutes. Two of them also decreased progress from 100% to about 86-88%. And they received credit as if one hour had been elapsed. But they were concluded.

                                                                                        Many thanks again.
                                                                                        Valter.

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                                                                                        Message 5924 - Posted 24 Oct 2015 8:26:25 UTC

                                                                                          hello,
                                                                                          I don't know if this issue is relevant or worthless, so i'm posting it: tonight I got 13 WU with app release 3.67 and 1 of these workunits completed successfully but failed validation with this message "workunit error - check skipped". WU is: https://ralph.bakerlab.org/workunit.php?wuid=3054528.

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                                                                                          Message 5925 - Posted 26 Oct 2015 18:25:35 UTC

                                                                                            Now Rosetta Mini Beta 3.65
                                                                                            I'm little confused about all those versions :-)

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                                                                                            Message 5926 - Posted 26 Oct 2015 20:23:43 UTC - in response to Message 5925.

                                                                                              Now Rosetta Mini Beta 3.65
                                                                                              I'm little confused about all those versions :-)


                                                                                              Me too! just kidding.

                                                                                              The versioning has been a bit inconsistent because I've just been updating the linux versions mainly. I did the recent update just have the beta and non-beta versions matched up.
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                                                                                              Message 5927 - Posted 26 Oct 2015 22:40:14 UTC

                                                                                                And again, nothing but validate errors on the new batch 3.65 T0559_indexed_frags_test_...

                                                                                                WUs of any other brand validate just fine. There's a bug in your validator IMHO.

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                                                                                                Message 5928 - Posted 27 Oct 2015 6:44:46 UTC - in response to Message 5927.

                                                                                                  And again, nothing but validate errors on the new batch 3.65 T0559_indexed_frags_test_...

                                                                                                  Windows, linux or mac?
                                                                                                  My 2 win has no problem

                                                                                                  There's a bug in your validator IMHO.

                                                                                                  There are a lot of requests to upgrade their OLD servers...

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                                                                                                  Message 5929 - Posted 27 Oct 2015 17:06:05 UTC - in response to Message 5927.

                                                                                                    And again, nothing but validate errors on the new batch 3.65 T0559_indexed_frags_test_...

                                                                                                    WUs of any other brand validate just fine. There's a bug in your validator IMHO.


                                                                                                    Please ignore the validation errors. I suspect it's just because the jobs are running faster than allowed on your computer for this specific test case. I'll switch to a better test case with longer run times per model.

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                                                                                                    Message 5930 - Posted 27 Oct 2015 17:59:03 UTC - in response to Message 5929.

                                                                                                      Thank you very much. So my computer is too fast for these WUs :)

                                                                                                      I'm looking forward to the new longer WUs. Keep on the good work!

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                                                                                                      Message 5936 - Posted 10 Dec 2015 10:06:35 UTC

                                                                                                        No new test??

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                                                                                                        Message 5938 - Posted 18 Dec 2015 15:44:42 UTC

                                                                                                          What's new with 3.68?
                                                                                                          Bugfix? New protocols?

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                                                                                                          Message 5955 - Posted 4 Jan 2016 19:50:54 UTC - in response to Message 5938.

                                                                                                            3.68 uses the latest Rosetta source. It includes new protocols, for example, a new cyclic peptide modeling method, and also a newly optimized energy function that improves scientific benchmarks.
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                                                                                                            Message 5956 - Posted 5 Jan 2016 8:39:52 UTC

                                                                                                              Ok, new graphic is pretty but seems to be no "coherent".
                                                                                                              1) All blue, included "accepted energy" box. Not an optimal solution, imho.
                                                                                                              2) Blue only simulations boxes (searching, accepted, low energy) and return to black for others boxes.

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                                                                                                              Message 5957 - Posted 5 Jan 2016 16:07:48 UTC - in response to Message 5955.

                                                                                                                3.68 uses the latest Rosetta source. It includes new protocols, for example, a new cyclic peptide modeling method, and also a newly optimized energy function that improves scientific benchmarks.


                                                                                                                I would like to build a binary and test environment somewhat similar to yours and do some performance analysis. I can guess and experiment to find an environment that works or you can guide my efforts to complement the work you guys are doing and would like done.

                                                                                                                I am currently using the November source bundle (rosetta_src_2015.39.58186_bundle.tgz) on a RHEL7.2 clone with the standard gcc/g++ 4.8.4.

                                                                                                                I have been able to build the "bin" default, debug and release versions and with the "extras=static". The only problem so far is the static scripts generate an error in the TEST scripts caused by a conservative "-Werror" option.

                                                                                                                I can upgrade/downgrade software versions easily if you prefer.

                                                                                                                If there is no need for Software Performance Engineer, then I also have some time for other tasks too. Testing, validation, bug isolation ... ?





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                                                                                                                Message 5958 - Posted 5 Jan 2016 20:07:56 UTC - in response to Message 5957.

                                                                                                                  If you have completed the bin build then you can run the various tests, integration, profile, etc in Rosetta/main/tests. I'm not familiar with the source bundle that you have, is it the academic release? Feel free to contact me via email dekim at u.washington.edu
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                                                                                                                  Message 5959 - Posted 5 Jan 2016 21:00:30 UTC

                                                                                                                    Got this error but the work unit was valid

                                                                                                                    <stderr_txt>
                                                                                                                    or/Parser should have replaced DummyMover.)

                                                                                                                    ERROR: false
                                                                                                                    ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 96
                                                                                                                    DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

                                                                                                                    This line was repeated dozens of times

                                                                                                                    See Result 3473010

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                                                                                                                    Message 5960 - Posted 6 Jan 2016 8:26:07 UTC - in response to Message 5959.

                                                                                                                      Last modified: 6 Jan 2016 8:26:37 UTC

                                                                                                                      Got this error but the work unit was valid
                                                                                                                      <stderr_txt>
                                                                                                                      or/Parser should have replaced DummyMover.)

                                                                                                                      ERROR: false
                                                                                                                      ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 96
                                                                                                                      DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

                                                                                                                      This line was repeated dozens of times


                                                                                                                      Same error, but my wus are "validation error" :-(

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                                                                                                                      Message 5965 - Posted 6 Jan 2016 19:56:10 UTC

                                                                                                                        I'm looking into this odd error. Can anyone who is experiencing these errors do me a favor and reset their project (mainly to just clear the project data and slot directories). This error can happen if the application is using an older database version but this shouldn't happen since the new database is packaged with the new application. thanks!
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                                                                                                                        Message 5966 - Posted 6 Jan 2016 20:31:30 UTC - in response to Message 5965.

                                                                                                                          I'm looking into this odd error. Can anyone who is experiencing these errors do me a favor and reset their project (mainly to just clear the project data and slot directories)


                                                                                                                          To be clear, i detach and re-attach the project....you've reached the daily quota of 6 wus :-(
                                                                                                                          I have to wait 12 hours to try new wus

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                                                                                                                          Message 5967 - Posted 6 Jan 2016 21:22:01 UTC - in response to Message 5966.

                                                                                                                            It looks like the quota was set for 20 on our server and I just updated it to 50. I'm not sure where the 6 is coming from. Thanks for helping with this.
                                                                                                                            ____________

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                                                                                                                            Message 5968 - Posted 6 Jan 2016 22:29:11 UTC - in response to Message 5956.

                                                                                                                              >Ok, new graphic is pretty but seems to be no "coherent".
                                                                                                                              >1) All blue, included "accepted energy" box. Not an optimal solution, imho.
                                                                                                                              >2) Blue only simulations boxes (searching, accepted, low energy) and return to >black for others boxes.

                                                                                                                              Could you provide a screenshot? Also, what's your hardware and OS?

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                                                                                                                              Message 5970 - Posted 7 Jan 2016 8:21:01 UTC - in response to Message 5967.

                                                                                                                                Last modified: 7 Jan 2016 8:42:32 UTC

                                                                                                                                Thanks for helping with this.


                                                                                                                                No problem, it's beta project so it's normal.

                                                                                                                                On my notebook i clear the project's folder and the scheduler download these files:
                                                                                                                                minirosetta_3.68_windows_x86_64
                                                                                                                                minirosetta_beta_3.64_windows_x86_64
                                                                                                                                minirosetta_database_a73b1f4
                                                                                                                                minirosetta_database_b7c7d78
                                                                                                                                minirosetta_graphics_3.64_windows_x86_64
                                                                                                                                minirosetta_graphics_3.68_windows_x86_64

                                                                                                                                +input files


                                                                                                                                P.S.
                                                                                                                                The problem remains :-(

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                                                                                                                                Message 5971 - Posted 7 Jan 2016 8:31:04 UTC - in response to Message 5968.

                                                                                                                                  Last modified: 7 Jan 2016 8:31:25 UTC

                                                                                                                                  Could you provide a screenshot?

                                                                                                                                  Screen

                                                                                                                                  Also, what's your hardware and OS?

                                                                                                                                  3 pc with integrated Intel, integrated Nvidia and AMD 260x

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                                                                                                                                  Message 5973 - Posted 7 Jan 2016 8:47:36 UTC - in response to Message 5966.

                                                                                                                                    I have to wait 12 hours to try new wus


                                                                                                                                    Ok. On this pc, after the detach/re-attach, scheduler downloads only (different from notebook):
                                                                                                                                    minirosetta_3.68_windows_x86_64
                                                                                                                                    minirosetta_database_a73b1f4
                                                                                                                                    minirosetta_graphics_3.68_windows_x86_64

                                                                                                                                    +input files


                                                                                                                                    Hope this help

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                                                                                                                                    Message 5974 - Posted 7 Jan 2016 10:30:24 UTC

                                                                                                                                      Same errors even after detach.
                                                                                                                                      Upload of these wus is over 2mb.


                                                                                                                                      CPU time 258.3438
                                                                                                                                      ERROR: false
                                                                                                                                      ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 96
                                                                                                                                      DummyMover::apply() should never have been called! (JobDistributor/Parser should have replaced DummyMover.)

                                                                                                                                      ERROR: false
                                                                                                                                      ERROR:: Exit from: ..\..\..\src\apps\public\boinc\minirosetta.cc line: 96
                                                                                                                                      ======================================================
                                                                                                                                      DONE :: 99 starting structures 1201 cpu seconds
                                                                                                                                      This process generated 99 decoys from 99 attempts
                                                                                                                                      ======================================================
                                                                                                                                      BOINC :: WS_max 0

                                                                                                                                      BOINC :: Watchdog shutting down...
                                                                                                                                      BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                      called boinc_finish

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                                                                                                                                      Message 5976 - Posted 7 Jan 2016 19:02:31 UTC - in response to Message 5974.

                                                                                                                                        Can you provide the slot directory data of a job to me?

                                                                                                                                        https://boinc.berkeley.edu/trac/wiki/BoincFiles

                                                                                                                                        It should be in your boinc data directory at boinc/slots/N where N is a number. If you are running multiple projects, you'll have to look for one that is running a Ralph@h job.


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                                                                                                                                        Message 5977 - Posted 7 Jan 2016 19:19:52 UTC - in response to Message 5976.

                                                                                                                                          Can you provide the slot directory data of a job to me?


                                                                                                                                          Slot 1
                                                                                                                                          Slot1screen

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                                                                                                                                          Message 5978 - Posted 7 Jan 2016 19:55:25 UTC

                                                                                                                                            I think we are close to finding the cause of this bug. I'll keep you all posted. Thanks [VENETO] boboviz.
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                                                                                                                                            Message 5979 - Posted 8 Jan 2016 14:18:44 UTC - in response to Message 5978.

                                                                                                                                              I think we are close to finding the cause of this bug. I'll keep you all posted.


                                                                                                                                              Meanwhile, i continue to crunch :-)

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                                                                                                                                              Message 5980 - Posted 8 Jan 2016 19:47:05 UTC

                                                                                                                                                The bug was found and the fixed version is currently building..... I'll post the updated app tomorrow if all goes as planned. Thanks!
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                                                                                                                                                Message 5981 - Posted 9 Jan 2016 0:57:41 UTC

                                                                                                                                                  It's taking some time to build so I may have to post the update on Monday.
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                                                                                                                                                  Message 5982 - Posted 10 Jan 2016 17:02:11 UTC - in response to Message 5981.

                                                                                                                                                    It's taking some time to build so I may have to post the update on Monday.


                                                                                                                                                    Have we to clean the project's folder?

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                                                                                                                                                    Message 5983 - Posted 11 Jan 2016 22:38:06 UTC - in response to Message 5982.

                                                                                                                                                      No need to clean up anything. I still need to build the 32bit linux app but the other platforms are done now so I hope to post the update later today after some quick tests etc.
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                                                                                                                                                      Message 5984 - Posted 12 Jan 2016 19:48:43 UTC

                                                                                                                                                        I ran into a bug for the 32bit linux build and also someone in the lab requested a minor update so I have to update and rebuild the apps along with tracking the bug. I think I know what is causing the bug so it shouldn't take too long.
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                                                                                                                                                        Message 5986 - Posted 13 Jan 2016 19:50:46 UTC

                                                                                                                                                          I just updated the minirosetta_beta app to version 3.70. This version has various bug fixes in addition to protocol updates. The major additions to this version are an improved score function and a new cyclic peptide modeling protocol. The graphics application was also updated to include new colors and a light source for spacefill rendering used for the new cyclic peptide modeling protocol. Spacefill rendering is only used as default for this protocol since the additional graphics load is minimal due to the small size of the proteins to be modeled.
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                                                                                                                                                          Message 5988 - Posted 14 Jan 2016 14:29:11 UTC - in response to Message 5967.

                                                                                                                                                            It looks like the quota was set for 20 on our server and I just updated it to 50. I'm not sure where the 6 is coming from. Thanks for helping with this.


                                                                                                                                                            AFAIK quota in BOINC became dynamic long ago and if computer report task with errors quota is cut. And go back to default(set in server settings) if computer begin reporting successful tasks.
                                                                                                                                                            So it can be any from 1 per CPU core / day to default value. 6 probable is 1 WU/day on 6 core/thread CPU.

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                                                                                                                                                            Message 5989 - Posted 14 Jan 2016 15:04:45 UTC

                                                                                                                                                              With 3.70 release a got strange bug - it looks like BOINC goes to infinite loop while extracting new RALPH WUs - disk work very hard non stop (it is classic HDD on this PC, not SSD) but WU can not load.
                                                                                                                                                              After ~15 min of non stop disk work i open process explorer to look what happening. I notice this:
                                                                                                                                                              boinc.exe process constantly reading and writing something to/from disk.
                                                                                                                                                              minirosetta_beta process (there was 3 of them on 4x core CPU, 4th was from WCG and work fine) starts, running for some time with low CPU utilization and exit. Then start again, work for some time (like ~1 min) and exit. And so on.
                                                                                                                                                              BOINC Manager (GUI) was not responsive at this time - it work, but not updating any status and not respond to any commands like pause or abort WUs (looks like it lost connection to boinc.exe, or boinc.exe not responding).

                                                                                                                                                              So I kill all BOINC and rosetta processes via process explorer and restart BOINC.
                                                                                                                                                              Same thing happened again - BOINC stuck while try to start 3 new RALPS WUs in parallel and stress HDD hard.
                                                                                                                                                              This time i try another thing - instead of killing minirosetta_beta process i suspend (pause by OS) 2 of 3 processes. 1 still running and after some time begin work normal: utilize full CPU core, stop hammering HDD, BOINC Manager begin work normal too.
                                                                                                                                                              Later i resume 2nd minirosetta_beta - it start OK, and 3rd minirosetta_beta - all OK too.

                                                                                                                                                              I do full restart - all work fine after restart too. And i can not reproduce this bug anymore.

                                                                                                                                                              It looks for me like latest BOINC ( i use 7.6.9 x86) or RALPH have some sort of timeout for loading(starting) of new WUs. And it is set to relative low value (like ~1 min). And if few rosetta WUs try to start at same time it slow downs classic HDDs so hard (because of extracting a few thousands small files for each WU from archive) so run out of this timeout and get restarted in a loop.

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                                                                                                                                                              Message 5990 - Posted 14 Jan 2016 19:11:25 UTC - in response to Message 5989.

                                                                                                                                                                With 3.70 release a got strange bug - it looks like BOINC goes to infinite loop while extracting new RALPH WUs - disk work very hard non stop (it is classic HDD on this PC, not SSD) but WU can not load.
                                                                                                                                                                After ~15 min of non stop disk work i open process explorer to look what happening. I notice this:
                                                                                                                                                                boinc.exe process constantly reading and writing something to/from disk.
                                                                                                                                                                minirosetta_beta process (there was 3 of them on 4x core CPU, 4th was from WCG and work fine) starts, running for some time with low CPU utilization and exit. Then start again, work for some time (like ~1 min) and exit. And so on.
                                                                                                                                                                BOINC Manager (GUI) was not responsive at this time - it work, but not updating any status and not respond to any commands like pause or abort WUs (looks like it lost connection to boinc.exe, or boinc.exe not responding).

                                                                                                                                                                So I kill all BOINC and rosetta processes via process explorer and restart BOINC.
                                                                                                                                                                Same thing happened again - BOINC stuck while try to start 3 new RALPS WUs in parallel and stress HDD hard.
                                                                                                                                                                This time i try another thing - instead of killing minirosetta_beta process i suspend (pause by OS) 2 of 3 processes. 1 still running and after some time begin work normal: utilize full CPU core, stop hammering HDD, BOINC Manager begin work normal too.
                                                                                                                                                                Later i resume 2nd minirosetta_beta - it start OK, and 3rd minirosetta_beta - all OK too.

                                                                                                                                                                I do full restart - all work fine after restart too. And i can not reproduce this bug anymore.

                                                                                                                                                                It looks for me like latest BOINC ( i use 7.6.9 x86) or RALPH have some sort of timeout for loading(starting) of new WUs. And it is set to relative low value (like ~1 min). And if few rosetta WUs try to start at same time it slow downs classic HDDs so hard (because of extracting a few thousands small files for each WU from archive) so run out of this timeout and get restarted in a loop.


                                                                                                                                                                Hey. I started running ralph today and i havent seen any troubles with my hdd. I have rosetta mini beta 3.70 version of program.

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                                                                                                                                                                Message 5991 - Posted 14 Jan 2016 19:41:36 UTC

                                                                                                                                                                  That sounds like a bad situation. I am not aware of a way to increase the timeout setting(s). I would limit the number of cpus that can run Ralph and R@h jobs to 1 or 2 if you continue to see this issue.
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                                                                                                                                                                  Message 5992 - Posted 14 Jan 2016 23:05:02 UTC - in response to Message 5991.

                                                                                                                                                                    Last modified: 14 Jan 2016 23:35:21 UTC

                                                                                                                                                                    It is a not about situation with few Rosetta WUs running at same time. Running 4 WUs or even 6-8 WUs in parallel on HDD is OK if PC have enough RAM. Because at running stage R@H use disk only a little and do not cause any problems.

                                                                                                                                                                    At loading stage (after BOINC restart / PC reboot) it is much more disk load from R@H/RALPH, but HDD can still cope with atleast 4 WUs parallel startup without problems (it takes few minutes of high HDD load, but not cause any errors).

                                                                                                                                                                    It is about initial starting/initialization of few new WUs in parallel - because at this point full rosetta database (which now HUGE ~4000 files, ~350 Mb) + WUs data is extracting from project folder to data\slots\x\ folders for each WU. This put really high stress and slowdown on HDDs.

                                                                                                                                                                    Usual BOINC initialize just one WU at a time because begin new WUs only after one of previous finished and all WUs have different run times so start time naturally shifting. So no problems too.
                                                                                                                                                                    But in some conditions like:
                                                                                                                                                                    - a mere coincidence of initialization time of few WUs
                                                                                                                                                                    - after long outage of project (boinc is "hungry" for jobs from this project and try to start an many WUs from it as it can immediately after download finished)
                                                                                                                                                                    - after project reset by user
                                                                                                                                                                    - at initial project addition to BOINC
                                                                                                                                                                    Multiple WUs try to initialize at same time and problem arise.

                                                                                                                                                                    So it is not often situation. And seen only on HDD, while SSD do not have any problems at all.
                                                                                                                                                                    So hard limit CPU cores allowed to run R@H would be like be beheaded instead of shave :) Though of course the problems with shaving is also solve this way lol

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                                                                                                                                                                    Message 5993 - Posted 14 Jan 2016 23:07:46 UTC - in response to Message 5991.

                                                                                                                                                                      Last modified: 14 Jan 2016 23:35:42 UTC

                                                                                                                                                                      P.S.
                                                                                                                                                                      Problem with huge slowdowns at initialization on HDD is known long ago for R@H/RALPH. But over time, it is constantly growing because main minirosetta database grow too with almost each new release:
                                                                                                                                                                      - when i start crunching for R@H it was "only" ~1500 files and 100 Mb
                                                                                                                                                                      - 2 years ago it was ~2500 files and 150 Mb
                                                                                                                                                                      - now it is ~4000 files and ~350 Mb for last minirosetta v.3.70

                                                                                                                                                                      So perhaps there is no any new bugs in BOINC or R@H and we just finally reach HDD limits with last update and start triggering some sort of BOINC timeouts/watchdog.

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                                                                                                                                                                      Message 5994 - Posted 15 Jan 2016 0:36:56 UTC

                                                                                                                                                                        We can add a random sleep before extracting the database but that time would be wasted of course. Maybe the sleep time could be a function of the number of cpus allowed to run jobs.
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                                                                                                                                                                        Message 5995 - Posted 15 Jan 2016 9:32:47 UTC - in response to Message 5993.

                                                                                                                                                                          So perhaps there is no any new bugs in BOINC or R@H and we just finally reach HDD limits with last update and start triggering some sort of BOINC timeouts/watchdog.


                                                                                                                                                                          The future is SSD... :-)

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                                                                                                                                                                          Message 5996 - Posted 15 Jan 2016 9:34:55 UTC

                                                                                                                                                                            This version seems to be quite stable.
                                                                                                                                                                            Do you think to pass in "production" on Rosetta?

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                                                                                                                                                                            Message 5997 - Posted 15 Jan 2016 18:26:19 UTC

                                                                                                                                                                              I discovered a bug in the graphics app caused by the recent changes which can cause it to hang. I need to fix this.
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                                                                                                                                                                              Message 5998 - Posted 15 Jan 2016 23:15:38 UTC - in response to Message 5992.

                                                                                                                                                                                Last modified: 15 Jan 2016 23:20:33 UTC


                                                                                                                                                                                It is about initial starting/initialization of few new WUs in parallel - because at this point full rosetta database (which now HUGE ~4000 files, ~350 Mb) + WUs data is extracting from project folder to data\slots\x\ folders for each WU. This put really high stress and slowdown on HDDs.



                                                                                                                                                                                u may like to try out running R@h/Ralph on Linux, i saw that Linux tend to use huge disk cache some 1GB quite common, i'd think that could account for part of the efficiency of running R@h/Ralph on Linux vs MS Win. i'd think that'd even beat SSD in speed. Just that u'd need sufficient RAM to buffer the number of parallel threads running concurrently :)

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                                                                                                                                                                                Message 5999 - Posted 16 Jan 2016 2:19:12 UTC

                                                                                                                                                                                  Plus the majority of developers/labs use linux and very few support/use windows. I added a short random sleep up to 10 seconds. Just posted 3.71 now.
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                                                                                                                                                                                  Message 6000 - Posted 16 Jan 2016 2:32:41 UTC

                                                                                                                                                                                    3.71 is not much different than 3.70. It includes a fix for a recently introduced bug that prevents the graphics app from hanging in an infinite loop if the worker app dies quickly before the graphics app is done initializing.
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                                                                                                                                                                                    Message 6001 - Posted 17 Jan 2016 13:15:24 UTC - in response to Message 6000.

                                                                                                                                                                                      Hello,
                                                                                                                                                                                      v3.71 freezes Boinc Manager when I try to display the graphics (it was not the case with the prevoius 3.68 beta with blue graphics)
                                                                                                                                                                                      I have to kill boinc manager and restart it (fortunatly, it didn't kill the other project tasks running in //)
                                                                                                                                                                                      Computer: i7, 4GHz, 16GB, Win7pro 64-bit, SSD (prog), HDD (data), integrated graphics (MB: Asus Z97-Pro)

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                                                                                                                                                                                      Message 6002 - Posted 18 Jan 2016 5:38:10 UTC - in response to Message 6001.

                                                                                                                                                                                        Did you wait at least a minute to a few? It may just be waiting for things to get initialized.
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                                                                                                                                                                                        Message 6003 - Posted 18 Jan 2016 8:29:55 UTC

                                                                                                                                                                                          Just a curiosity: what is the failure rate "acceptable" to pass on Rosetta? 5%?10%?

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                                                                                                                                                                                          Message 6004 - Posted 18 Jan 2016 18:54:33 UTC - in response to Message 6002.

                                                                                                                                                                                            Of course, yes... At least the time to try several ways to kill the graphic app which stayed in memory... But without success.
                                                                                                                                                                                            Reading previous similar posts, I believe a kernel thread was not responding.
                                                                                                                                                                                            (I could not kill the process, even with the /force option.)
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                                                                                                                                                                                            Message 6005 - Posted 19 Jan 2016 4:17:52 UTC

                                                                                                                                                                                              Does this happen every time you try the graphics app? I'm not sure what is causing this.

                                                                                                                                                                                              I wonder if anyone else is having this issue.
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                                                                                                                                                                                              Message 6006 - Posted 19 Jan 2016 7:57:31 UTC - in response to Message 6004.

                                                                                                                                                                                                Reading previous similar posts, I believe a kernel thread was not responding.(I could not kill the process, even with the /force option.)


                                                                                                                                                                                                Try Process Explorer to see the problem

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                                                                                                                                                                                                Message 6007 - Posted 19 Jan 2016 18:52:48 UTC

                                                                                                                                                                                                  I'd like to push this version out to R@h soon but this issue is worrying me. Is this reproducible and are others seeing this same issue?
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                                                                                                                                                                                                  Message 6008 - Posted 19 Jan 2016 19:17:51 UTC

                                                                                                                                                                                                    Aside from this, the current app looks pretty stable. Most of the errors are due to manual aborts.


                                                                                                                                                                                                    RALPH@home: Pass percentage by platform

                                                                                                                                                                                                    Application OS Total
                                                                                                                                                                                                    Results Pass Rate Fail Rate Failed
                                                                                                                                                                                                    Downloading Failed
                                                                                                                                                                                                    Downloaded Failed
                                                                                                                                                                                                    Computing Failed
                                                                                                                                                                                                    Uploading Failed
                                                                                                                                                                                                    Uploaded Aborted
                                                                                                                                                                                                    371 Darwin x86 461 100.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000%
                                                                                                                                                                                                    371 Linux 2956 94.3843% 5.4804% 0.0000% 0.0000% 0.2368% 0.0000% 0.0000% 5.2436%
                                                                                                                                                                                                    371 Windows 6832 93.7207% 6.2500% 0.0439% 0.0000% 0.8636% 0.0000% 0.0000% 5.3425%

                                                                                                                                                                                                    ____________

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                                                                                                                                                                                                    Message 6009 - Posted 20 Jan 2016 6:42:40 UTC

                                                                                                                                                                                                      "Rosetta Mini for Android is not available for you type of computer"

                                                                                                                                                                                                      ??

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                                                                                                                                                                                                      Message 6010 - Posted 20 Jan 2016 7:58:03 UTC - in response to Message 6009.

                                                                                                                                                                                                        "Rosetta Mini for Android is not available for you type of computer"

                                                                                                                                                                                                        ??


                                                                                                                                                                                                        Edit: SOLVED. Restart boinc client and receive new work

                                                                                                                                                                                                        P.S.
                                                                                                                                                                                                        All graphic ok also on new wus

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                                                                                                                                                                                                        Message 6011 - Posted 20 Jan 2016 9:35:36 UTC - in response to Message 6008.


                                                                                                                                                                                                          Application OS Total
                                                                                                                                                                                                          Results Pass Rate Fail Rate Failed
                                                                                                                                                                                                          Downloading Failed
                                                                                                                                                                                                          Downloaded Failed
                                                                                                                                                                                                          Computing Failed
                                                                                                                                                                                                          Uploading Failed
                                                                                                                                                                                                          Uploaded Aborted
                                                                                                                                                                                                          371 Darwin x86 461 100.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000% 0.0000%
                                                                                                                                                                                                          371 Linux 2956 94.3843% 5.4804% 0.0000% 0.0000% 0.2368% 0.0000% 0.0000% 5.2436%
                                                                                                                                                                                                          371 Windows 6832 93.7207% 6.2500% 0.0439% 0.0000% 0.8636% 0.0000% 0.0000% 5.3425%


                                                                                                                                                                                                          Seems to be ok.

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                                                                                                                                                                                                          Message 6013 - Posted 20 Jan 2016 11:34:50 UTC - in response to Message 6010.

                                                                                                                                                                                                            "Rosetta Mini for Android is not available for you type of computer"

                                                                                                                                                                                                            ??


                                                                                                                                                                                                            Edit: SOLVED. Restart boinc client and receive new work


                                                                                                                                                                                                            Re-edit: NOT Solved.
                                                                                                                                                                                                            Continue to request Rosetta Mini for Android on my Windows 10 with Amd Fx

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                                                                                                                                                                                                            Message 6014 - Posted 20 Jan 2016 18:16:50 UTC - in response to Message 6013.

                                                                                                                                                                                                              That is odd. I also updated the android application. But the boinc client should take care of the app management of different platforms etc.
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                                                                                                                                                                                                              Message 6015 - Posted 20 Jan 2016 19:06:28 UTC - in response to Message 6014.

                                                                                                                                                                                                                That is odd. I also updated the android application. But the boinc client should take care of the app management of different platforms etc.


                                                                                                                                                                                                                Same problem on my intel notebook....

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                                                                                                                                                                                                                Message 6016 - Posted 20 Jan 2016 19:07:53 UTC

                                                                                                                                                                                                                  Some errors:
                                                                                                                                                                                                                  3716117

                                                                                                                                                                                                                  Unhandled Exception Detected...

                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                  Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x73162ED2

                                                                                                                                                                                                                  Engaging BOINC Windows Runtime Debugger...

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                                                                                                                                                                                                                  Message 6017 - Posted 20 Jan 2016 19:54:24 UTC - in response to Message 6016.

                                                                                                                                                                                                                    This error is due to the large memory requirement of the test job. I resubmitted the job with a memory bound which hopefully should avoid such errors.
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                                                                                                                                                                                                                    Message 6018 - Posted 21 Jan 2016 1:45:42 UTC - in response to Message 6006.

                                                                                                                                                                                                                      Sorry, I was too busy to reply and my system was done today...

                                                                                                                                                                                                                      Restarted now and checked again: no more problem!

                                                                                                                                                                                                                      The only difference was a reboot after a classical W7-64 KB patches applied...

                                                                                                                                                                                                                      When I got the error, using PE, I found one thread in ntdll.dll that call a RtlSomething function that neither return (sorry, I didn't pick the full name at that moment). It was the only thread started or remaining after a kill attempt (the main app was killed, only the graphics part stayed in memory)

                                                                                                                                                                                                                      So, I will continue to check regularly if that behavior happen again and report it in case...

                                                                                                                                                                                                                      FYI, Graphic driver: Intel HD Graphics 4600, version 10.18.14.4264

                                                                                                                                                                                                                      Process Explorer when working as expected:


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                                                                                                                                                                                                                      Message 6019 - Posted 21 Jan 2016 15:27:25 UTC

                                                                                                                                                                                                                        Two Android phones:

                                                                                                                                                                                                                        Newer unit is a Motorola Droid RAZR MAXX XT912 with Android 4.1.2, host 36214
                                                                                                                                                                                                                        Seems to be working mostly okay with 3.71 tasks. 9 of 34 tasks report validation errors, where the task report shows a file_xfer_error, i.e., 3718881
                                                                                                                                                                                                                        upload failure: <file_xfer_error>
                                                                                                                                                                                                                        <file_name>simple_cycpep_predict_example_20280_97_1_0</file_name>
                                                                                                                                                                                                                        <error_code>-161</error_code>
                                                                                                                                                                                                                        </file_xfer_error>

                                                                                                                                                                                                                        Older unit is a Motorola Droid X2 with Android 2.3.5, host 36252
                                                                                                                                                                                                                        All tasks error out with a signal 11, i.e., 3718646

                                                                                                                                                                                                                        Both devices are using older BOINC version 7.0.36 from NativeBOINC

                                                                                                                                                                                                                        boinccmd --host ed-droidmaxx --get_host_info
                                                                                                                                                                                                                        timezone: -18000
                                                                                                                                                                                                                        domain name: droidmaxx
                                                                                                                                                                                                                        IP addr: 68e4:ffbe::d93d:540
                                                                                                                                                                                                                        #CPUS: 2
                                                                                                                                                                                                                        CPU vendor: ARM
                                                                                                                                                                                                                        CPU model: ARMv7 Processor rev 3 (v7l) @1200MHz
                                                                                                                                                                                                                        CPU FP OPS: 944491591.072010
                                                                                                                                                                                                                        CPU int OPS: 2013178288.104389
                                                                                                                                                                                                                        CPU mem BW: 1000000000.000000
                                                                                                                                                                                                                        OS name: Android
                                                                                                                                                                                                                        OS version: 3.0.8-gbacb1cf
                                                                                                                                                                                                                        mem size: 881475584.000000
                                                                                                                                                                                                                        cache size: -1.000000
                                                                                                                                                                                                                        swap size: 0.000000
                                                                                                                                                                                                                        disk size: 3228372992.000000
                                                                                                                                                                                                                        disk free: 1205657600.000000

                                                                                                                                                                                                                        boinccmd --host ed-droidx2 --get_host_info
                                                                                                                                                                                                                        timezone: -18000
                                                                                                                                                                                                                        domain name: ed-droidx2
                                                                                                                                                                                                                        IP addr: 804:0:8822:87be:400:0:4:0
                                                                                                                                                                                                                        #CPUS: 2
                                                                                                                                                                                                                        CPU vendor: ARM
                                                                                                                                                                                                                        CPU model: ARMv7 Processor rev 0 (v7l) @1000MHz
                                                                                                                                                                                                                        CPU FP OPS: 719713184.931507
                                                                                                                                                                                                                        CPU int OPS: 1417059093.091529
                                                                                                                                                                                                                        CPU mem BW: 1000000000.000000
                                                                                                                                                                                                                        OS name: Android
                                                                                                                                                                                                                        OS version: 2.6.32.9-00008-gc406305
                                                                                                                                                                                                                        mem size: 423706624.000000
                                                                                                                                                                                                                        cache size: -1.000000
                                                                                                                                                                                                                        swap size: 0.000000
                                                                                                                                                                                                                        disk size: 2113744896.000000
                                                                                                                                                                                                                        disk free: 1497886720.000000

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                                                                                                                                                                                                                        Message 6020 - Posted 21 Jan 2016 18:48:08 UTC

                                                                                                                                                                                                                          The android app requires Android version 4.1+. I'm not sure what is going on with your Motorola. Seems to run ok. Are there any network issues?
                                                                                                                                                                                                                          ____________

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                                                                                                                                                                                                                          Message 6021 - Posted 21 Jan 2016 22:14:54 UTC - in response to Message 6020.

                                                                                                                                                                                                                            I will remove it from the older device then (I missed the 4.1+ version requirement).

                                                                                                                                                                                                                            For the XT912, I also don't understand the error. I've never had any network issues (I monitor it with a remote boinc-gui, and also ping it every 5 seconds). The device also has plenty of free storage.

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                                                                                                                                                                                                                            Message 6022 - Posted 27 Jan 2016 17:10:22 UTC

                                                                                                                                                                                                                              Ver 3.71 FAILED for both of us who ran this task:

                                                                                                                                                                                                                              Task ID 3722270

                                                                                                                                                                                                                              Name gaurav_design13_SAVE_ALL_OUT_20284_27_1

                                                                                                                                                                                                                              ======================================================
                                                                                                                                                                                                                              DONE :: 2 starting structures 28399.3 cpu seconds
                                                                                                                                                                                                                              This process generated 56 decoys from 56 attempts
                                                                                                                                                                                                                              ======================================================
                                                                                                                                                                                                                              BOINC :: WS_max 2.1257e+008

                                                                                                                                                                                                                              BOINC :: Watchdog shutting down...
                                                                                                                                                                                                                              BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                                                                                                              called boinc_finish

                                                                                                                                                                                                                              </stderr_txt>
                                                                                                                                                                                                                              <message>
                                                                                                                                                                                                                              upload failure: <file_xfer_error>
                                                                                                                                                                                                                              <file_name>gaurav_design13_SAVE_ALL_OUT_20284_27_1_0</file_name>
                                                                                                                                                                                                                              <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                              </file_xfer_error>

                                                                                                                                                                                                                              </message>
                                                                                                                                                                                                                              ]]>
                                                                                                                                                                                                                              Validate state Invalid
                                                                                                                                                                                                                              Claimed credit 93.8624553758775
                                                                                                                                                                                                                              Granted credit 0
                                                                                                                                                                                                                              application version 3.71

                                                                                                                                                                                                                              ____________

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                                                                                                                                                                                                                              Message 6023 - Posted 28 Jan 2016 19:17:26 UTC

                                                                                                                                                                                                                                thanks, there is an error in the job submission and will get fixed. I alerted the researcher that submitted these tests about the issue and fix.
                                                                                                                                                                                                                                ____________

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                                                                                                                                                                                                                                Message 6033 - Posted 4 Feb 2016 14:14:34 UTC - in response to Message 5986.

                                                                                                                                                                                                                                  The graphics application was also updated to include new colors and a light source for spacefill rendering used for the new cyclic peptide modeling protocol. Spacefill rendering is only used as default for this protocol since the additional graphics load is minimal due to the small size of the proteins to be modeled.


                                                                                                                                                                                                                                  Is this the new graph??
                                                                                                                                                                                                                                  Screen

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                                                                                                                                                                                                                                  Message 6034 - Posted 4 Feb 2016 17:43:57 UTC - in response to Message 6033.


                                                                                                                                                                                                                                    Is this the new graph??
                                                                                                                                                                                                                                    Screen


                                                                                                                                                                                                                                    And error of this wu

                                                                                                                                                                                                                                    <message>
                                                                                                                                                                                                                                    upload failure: <file_xfer_error>
                                                                                                                                                                                                                                    <file_name>gaurav_rsmn_0161_65_daa2_SAVE_ALL_OUT_20295_39_1_0</file_name>
                                                                                                                                                                                                                                    <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                                    </file_xfer_error>

                                                                                                                                                                                                                                    </message>

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                                                                                                                                                                                                                                    Message 6035 - Posted 4 Feb 2016 19:40:30 UTC

                                                                                                                                                                                                                                      The current Ralph WUs use huge amounts of RAM, I've seen up to 4 Gb per unit, is it on purpose? any new kind of simulation?

                                                                                                                                                                                                                                      thanks for the info

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                                                                                                                                                                                                                                      Message 6036 - Posted 4 Feb 2016 20:12:24 UTC - in response to Message 6033.

                                                                                                                                                                                                                                        Last modified: 4 Feb 2016 20:13:01 UTC

                                                                                                                                                                                                                                        "Is this the new graph??"

                                                                                                                                                                                                                                        Yes.
                                                                                                                                                                                                                                        ____________

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                                                                                                                                                                                                                                        Message 6037 - Posted 4 Feb 2016 20:15:57 UTC - in response to Message 6035.

                                                                                                                                                                                                                                          The current Ralph WUs use huge amounts of RAM, I've seen up to 4 Gb per unit, is it on purpose? any new kind of simulation?

                                                                                                                                                                                                                                          thanks for the info




                                                                                                                                                                                                                                          Yes, I'm running a test of a new type of job that runs small perturbations of the protein backbone and then does a round of design. The design protocol can use a lot of memory. I realize that this will be problematic and will see if we can distribute these jobs to high memory machines. We may just not be able to run these on R@h.
                                                                                                                                                                                                                                          ____________

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                                                                                                                                                                                                                                          Message 6038 - Posted 4 Feb 2016 21:00:04 UTC - in response to Message 6037.

                                                                                                                                                                                                                                            The current Ralph WUs use huge amounts of RAM, I've seen up to 4 Gb per unit, is it on purpose? any new kind of simulation?

                                                                                                                                                                                                                                            thanks for the info




                                                                                                                                                                                                                                            Yes, I'm running a test of a new type of job that runs small perturbations of the protein backbone and then does a round of design. The design protocol can use a lot of memory. I realize that this will be problematic and will see if we can distribute these jobs to high memory machines. We may just not be able to run these on R@h.


                                                                                                                                                                                                                                            R@H means Rosseta, doesn`t it? It is good for the investigation you could look for ways of distributing these units. The only effective way I could think of is limiting the quantity of units downloaded, by the user as in CEP project in WCG or by the project. Distributing them only to hosts with lot of memory could just not be enough if the hosts have also a lot of available threads (like mine).

                                                                                                                                                                                                                                            A good thing I'm seeing with these units is that Boinc/Ralph seems to take into account the amount of available system memory and limits the menory used, even limiting the quantity of units in execution below the quantity of available threads, and the systems does not stall and hang as used to happen in these cases. Is it correct ?

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                                                                                                                                                                                                                                            Message 6039 - Posted 5 Feb 2016 0:59:20 UTC - in response to Message 6038.

                                                                                                                                                                                                                                              The current Ralph WUs use huge amounts of RAM, I've seen up to 4 Gb per unit, is it on purpose? any new kind of simulation?

                                                                                                                                                                                                                                              thanks for the info




                                                                                                                                                                                                                                              Yes, I'm running a test of a new type of job that runs small perturbations of the protein backbone and then does a round of design. The design protocol can use a lot of memory. I realize that this will be problematic and will see if we can distribute these jobs to high memory machines. We may just not be able to run these on R@h.


                                                                                                                                                                                                                                              R@H means Rosseta, doesn`t it? It is good for the investigation you could look for ways of distributing these units. The only effective way I could think of is limiting the quantity of units downloaded, by the user as in CEP project in WCG or by the project. Distributing them only to hosts with lot of memory could just not be enough if the hosts have also a lot of available threads (like mine).

                                                                                                                                                                                                                                              A good thing I'm seeing with these units is that Boinc/Ralph seems to take into account the amount of available system memory and limits the menory used, even limiting the quantity of units in execution below the quantity of available threads, and the systems does not stall and hang as used to happen in these cases. Is it correct ?



                                                                                                                                                                                                                                              I'm not sure. There haven't been that many reports of stalling/hanging etc...

                                                                                                                                                                                                                                              I think I was able to debug our scheduler so that it should not send out these high memory jobs to low memory clients. Hopefully it can now be a matter of setting the limits.

                                                                                                                                                                                                                                              ____________

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                                                                                                                                                                                                                                              Message 6040 - Posted 5 Feb 2016 6:40:43 UTC - in response to Message 6039.

                                                                                                                                                                                                                                                I'm not sure. There haven't been that many reports of stalling/hanging etc...
                                                                                                                                                                                                                                                I think I was able to debug our scheduler so that it should not send out these high memory jobs to low memory clients. Hopefully it can now be a matter of setting the limits.


                                                                                                                                                                                                                                                The message is clear:
                                                                                                                                                                                                                                                05/02/2016 07:38:34 | ralph@home | Rosetta Mini needs 7629.39 MB RAM but only 2302.58 MB is available for use.

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                                                                                                                                                                                                                                                Message 6041 - Posted 5 Feb 2016 8:57:46 UTC

                                                                                                                                                                                                                                                  Obviously all errors:

                                                                                                                                                                                                                                                  Unhandled Exception Detected...

                                                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                                                  Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x73682ED2

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                                                                                                                                                                                                                                                  Message 6042 - Posted 5 Feb 2016 15:58:53 UTC

                                                                                                                                                                                                                                                    I'm getting quick client/computer errors for the backrub_design tasks. From the stderr out:

                                                                                                                                                                                                                                                    minirosetta_3.71_x86_64-apple-darwin(50310,0x7fff732a2300) malloc: *** error for object 0x4b4fc3ef02e87d9a: pointer being freed was not allocated
                                                                                                                                                                                                                                                    *** set a breakpoint in malloc_error_break to debug


                                                                                                                                                                                                                                                    Also gaurav_rsmn_0161_65_daa2_2_SAVE_ALL_OUT_20296_50_0 is claiming a file transfer error:

                                                                                                                                                                                                                                                    # cpu_run_time_pref: 14400
                                                                                                                                                                                                                                                    reached end of minirosetta::main()
                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                    DONE :: 2 starting structures 13443.3 cpu seconds
                                                                                                                                                                                                                                                    This process generated 13 decoys from 13 attempts
                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                    BOINC :: WS_max 2.65622e+08

                                                                                                                                                                                                                                                    BOINC :: Watchdog shutting down...
                                                                                                                                                                                                                                                    BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                                                                                                                                    called boinc_finish

                                                                                                                                                                                                                                                    </stderr_txt>
                                                                                                                                                                                                                                                    <message>
                                                                                                                                                                                                                                                    upload failure: <file_xfer_error>
                                                                                                                                                                                                                                                    <file_name>gaurav_rsmn_0161_65_daa2_2_SAVE_ALL_OUT_20296_50_0_0</file_name>
                                                                                                                                                                                                                                                    <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                                                    </file_xfer_error>


                                                                                                                                                                                                                                                    Are those results truly lost?

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                                                                                                                                                                                                                                                    Message 6043 - Posted 5 Feb 2016 19:19:53 UTC - in response to Message 6042.

                                                                                                                                                                                                                                                      I'm getting quick client/computer errors for the backrub_design tasks. From the stderr out:

                                                                                                                                                                                                                                                      minirosetta_3.71_x86_64-apple-darwin(50310,0x7fff732a2300) malloc: *** error for object 0x4b4fc3ef02e87d9a: pointer being freed was not allocated
                                                                                                                                                                                                                                                      *** set a breakpoint in malloc_error_break to debug


                                                                                                                                                                                                                                                      Also gaurav_rsmn_0161_65_daa2_2_SAVE_ALL_OUT_20296_50_0 is claiming a file transfer error:

                                                                                                                                                                                                                                                      # cpu_run_time_pref: 14400
                                                                                                                                                                                                                                                      reached end of minirosetta::main()
                                                                                                                                                                                                                                                      ======================================================
                                                                                                                                                                                                                                                      DONE :: 2 starting structures 13443.3 cpu seconds
                                                                                                                                                                                                                                                      This process generated 13 decoys from 13 attempts
                                                                                                                                                                                                                                                      ======================================================
                                                                                                                                                                                                                                                      BOINC :: WS_max 2.65622e+08

                                                                                                                                                                                                                                                      BOINC :: Watchdog shutting down...
                                                                                                                                                                                                                                                      BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                                                                                                                                      called boinc_finish

                                                                                                                                                                                                                                                      </stderr_txt>
                                                                                                                                                                                                                                                      <message>
                                                                                                                                                                                                                                                      upload failure: <file_xfer_error>
                                                                                                                                                                                                                                                      <file_name>gaurav_rsmn_0161_65_daa2_2_SAVE_ALL_OUT_20296_50_0_0</file_name>
                                                                                                                                                                                                                                                      <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                                                      </file_xfer_error>


                                                                                                                                                                                                                                                      Are those results truly lost?


                                                                                                                                                                                                                                                      I'm not sure what is causing the backrub error but the gaurav jobs have a filter that may sometimes remove all models so the result is as expected for that test. I think the filter has been updated so that at least 1 model is generated in the next test batch but I'm not sure. Vikram, the one submitting those jobs is testing this.

                                                                                                                                                                                                                                                      ____________

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                                                                                                                                                                                                                                                      Message 6049 - Posted 11 Feb 2016 8:02:32 UTC

                                                                                                                                                                                                                                                        This first kind of android wus ("simple_cycpep_predict_") seems to be ok on my smartphone. Now i'm downloading a new type: "db_design5_".

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                                                                                                                                                                                                                                                        Message 6051 - Posted 13 Feb 2016 19:22:39 UTC - in response to Message 6037.

                                                                                                                                                                                                                                                          The current Ralph WUs use huge amounts of RAM, I've seen up to 4 Gb per unit, is it on purpose? any new kind of simulation?

                                                                                                                                                                                                                                                          thanks for the info




                                                                                                                                                                                                                                                          Yes, I'm running a test of a new type of job that runs small perturbations of the protein backbone and then does a round of design. The design protocol can use a lot of memory. I realize that this will be problematic and will see if we can distribute these jobs to high memory machines. We may just not be able to run these on R@h.



                                                                                                                                                                                                                                                          I've crunched a lot of these backrub units, they are tough due to the large memory requirements. It is necessary to limit the quantity of units being simultaneously crunched and a lot of baby sitting, but it is also fun :).

                                                                                                                                                                                                                                                          Most of them don't use to go over 4 Gb but I got half a dozen reaching almost 7GB in the same host. It has 32 Gb but also 72 threads :), in short it stalled because lack of memory, So I finally had to abort them and a few more because they were nearly over the deadline.



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                                                                                                                                                                                                                                                          Message 6055 - Posted 16 Mar 2016 4:04:25 UTC - in response to Message 5918.

                                                                                                                                                                                                                                                            Yeah me too.. Don't understand.

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                                                                                                                                                                                                                                                            Message 6056 - Posted 17 Mar 2016 18:30:24 UTC

                                                                                                                                                                                                                                                              I just updated the minirosetta_beta application to 3.72. The 32 bit linux version has not been updated yet due to some memory issues while compiling. I hope to have it available soon.
                                                                                                                                                                                                                                                              ____________

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                                                                                                                                                                                                                                                              Message 6057 - Posted 17 Mar 2016 19:20:10 UTC - in response to Message 6056.

                                                                                                                                                                                                                                                                Just a short question:



                                                                                                                                                                                                                                                                Why does ralph@home also download minirosetta_3.71 ?

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                                                                                                                                                                                                                                                                Message 6058 - Posted 18 Mar 2016 6:36:57 UTC

                                                                                                                                                                                                                                                                  Some memory errors on my win10

                                                                                                                                                                                                                                                                  3752038

                                                                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                                                                  Reason: Access Violation (0xc0000005) at address 0x015FC9A4 read attempt to address 0x2F551088


                                                                                                                                                                                                                                                                  3752039

                                                                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                                                                  Reason: Access Violation (0xc0000005) at address 0x015FCA02 read attempt to address 0x30A68058


                                                                                                                                                                                                                                                                  3752805

                                                                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                                                                  Reason: Access Violation (0xc0000005) at address 0x015FCA02 read attempt to address 0x2194F048

                                                                                                                                                                                                                                                                  Dr. Merkwürdigliebe

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                                                                                                                                                                                                                                                                  Message 6059 - Posted 18 Mar 2016 15:19:30 UTC

                                                                                                                                                                                                                                                                    Lots of validation errors, e.g.

                                                                                                                                                                                                                                                                    Validation error

                                                                                                                                                                                                                                                                    Trotador

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                                                                                                                                                                                                                                                                    Message 6060 - Posted 18 Mar 2016 19:52:16 UTC

                                                                                                                                                                                                                                                                      In one of my hosts, all "des5ralph_design5" units failing after finishing crunching OK with

                                                                                                                                                                                                                                                                      </stderr_txt>
                                                                                                                                                                                                                                                                      <message>
                                                                                                                                                                                                                                                                      upload failure: <file_xfer_error>
                                                                                                                                                                                                                                                                      <file_name>des5ralph_design5_hydrophobic32_test1_buriedtrp_S_0095_SAVE_ALL_OUT_20313_229_0_0</file_name>
                                                                                                                                                                                                                                                                      <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                                                                      </file_xfer_error>

                                                                                                                                                                                                                                                                      </message>
                                                                                                                                                                                                                                                                      ]]>

                                                                                                                                                                                                                                                                      This host have have processing time above default, all units have been crunched during 9-12 hours and generated lot of decoys but end with this error.

                                                                                                                                                                                                                                                                      Wingmen crunhing just an hour and generating few decoys are uploading OK.

                                                                                                                                                                                                                                                                      Trotador

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                                                                                                                                                                                                                                                                      Message 6061 - Posted 19 Mar 2016 0:30:06 UTC

                                                                                                                                                                                                                                                                        All units erroring in all my Linux hosts:

                                                                                                                                                                                                                                                                        Some of the wus failing after finishing crunching OK with the error (these wus were donwloaded yesterday):

                                                                                                                                                                                                                                                                        </stderr_txt>
                                                                                                                                                                                                                                                                        <message>
                                                                                                                                                                                                                                                                        upload failure: <file_xfer_error>
                                                                                                                                                                                                                                                                        <file_name>des5ralph_design5_hydrophobic32_test1_buriedtrp_S_0095_SAVE_ALL_OUT_20313_229_0_0</file_name>
                                                                                                                                                                                                                                                                        <error_code>-161 (not found)</error_code>
                                                                                                                                                                                                                                                                        </file_xfer_error>

                                                                                                                                                                                                                                                                        </message>
                                                                                                                                                                                                                                                                        ]]>

                                                                                                                                                                                                                                                                        Other failing after several hours or after restarting BOINC and reporting 0 seconds of time computed with the error (these ones dowloaded today):

                                                                                                                                                                                                                                                                        ERROR: ERROR: Option matching -cyclic_peptide:user_set_alph_dihedral_perturbation not found in command line top-level context

                                                                                                                                                                                                                                                                        I'm seing that most of the windows hosts seem to finish Ok the wu and report success, but it is not a conclusive fact.

                                                                                                                                                                                                                                                                        Stopping crunching until knowing more.


                                                                                                                                                                                                                                                                        BlisteringSheep

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                                                                                                                                                                                                                                                                        Message 6062 - Posted 19 Mar 2016 2:21:01 UTC - in response to Message 5861.

                                                                                                                                                                                                                                                                          With 3.72, no successful work units on any Linux hosts. Tested across multiple distributions (all 64-bit). They are running to completion, but then reporting output file missing.

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                                                                                                                                                                                                                                                                          Message 6063 - Posted 19 Mar 2016 2:41:04 UTC

                                                                                                                                                                                                                                                                            Last modified: 19 Mar 2016 2:42:06 UTC

                                                                                                                                                                                                                                                                            These workunits gave a a computation error at about the same time that a workunit from another BOINC projects reached a point with a rather high memory demand - over a gigabyte. So they might be due to running out of memory, rather than anything else.

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3762275

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3761810

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3761801

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3757576

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3756003

                                                                                                                                                                                                                                                                            However, my other computer running BOINC rarely runs out of memory, and gave a different error for some recent workunits.

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3757706

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3753036

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3752853

                                                                                                                                                                                                                                                                            The application was shown as Rosetta Mini Beta, with no version number I could find after the workunits finished. The second computer shows three workunits that may be this type, still marked as version 3.72 while still on the computer.

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3763701

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3762417

                                                                                                                                                                                                                                                                            http://ralph.bakerlab.org/result.php?resultid=3763972

                                                                                                                                                                                                                                                                            I've already looked into adding more memory for each of my computers that run BOINC. Their motherboards are not compatible with adding more.

                                                                                                                                                                                                                                                                            keputnam

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                                                                                                                                                                                                                                                                            Message 6064 - Posted 19 Mar 2016 2:43:31 UTC

                                                                                                                                                                                                                                                                              Add me to the no more till it's fixedlist

                                                                                                                                                                                                                                                                              four WUs 0 successes 14 more stackee up that I will abort

                                                                                                                                                                                                                                                                              Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                              Message 6065 - Posted 19 Mar 2016 8:38:42 UTC - in response to Message 6063.

                                                                                                                                                                                                                                                                                I've already looked into adding more memory for each of my computers that run BOINC. Their motherboards are not compatible with adding more.


                                                                                                                                                                                                                                                                                My 6 cores has 16 Gb of ram and i have also wu's failure.
                                                                                                                                                                                                                                                                                I think it's not a question of "how much" memory, but seems to be an allocation problem.
                                                                                                                                                                                                                                                                                A 3.73 version will be welcome!

                                                                                                                                                                                                                                                                                P.S.
                                                                                                                                                                                                                                                                                3.72 uses from 40 to 90 Mb of ram on my machines....

                                                                                                                                                                                                                                                                                Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                Message 6066 - Posted 19 Mar 2016 9:19:29 UTC

                                                                                                                                                                                                                                                                                  Strange behaviour.
                                                                                                                                                                                                                                                                                  Some wus fail after few minutes, others after 2 hours....

                                                                                                                                                                                                                                                                                  Mad_Max

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                                                                                                                                                                                                                                                                                  Message 6068 - Posted 19 Mar 2016 17:41:43 UTC

                                                                                                                                                                                                                                                                                    Same here. A LOT of random WUs crashes on v 3.72
                                                                                                                                                                                                                                                                                    Different hosts, different CPUs (4/6/8 cores), different OS (Win 7 x64 and WinXP x32) - all getting a lot failed WUs with "Unhandled Exception Detected..." in logs

                                                                                                                                                                                                                                                                                    Snagletooth

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                                                                                                                                                                                                                                                                                    Message 6069 - Posted 19 Mar 2016 17:52:46 UTC

                                                                                                                                                                                                                                                                                      So far all "des5ralph_design5" tasks have failed and two of the three currently processing are exhibiting some curious behavior. Those that failed ended with:

                                                                                                                                                                                                                                                                                      std::cerr: Exception was thrown:
                                                                                                                                                                                                                                                                                      Cannot normalize xyzVector of length() zero


                                                                                                                                                                                                                                                                                      My target runtime is four hours. All of the tasks currently processing have exceeded that by two, eight and twenty-seven hours. According to the properties tab no checkpoints have been taken. I have confirmed via the computers' Activity Managers that all tasks are currently using the cpu. In the stderr out of the tasks that failed the lines "Starting watchdog...Watchdog active." do appear so presumably the watchdog is set but not working in the tasks I'm running now.

                                                                                                                                                                                                                                                                                      Even more curious, two of the tasks on two different machines, with different versions of the Mac OS and different versions of BOINC, are recording elapsed times of less than the cpu times. Even my usually creative imagination is stumped by this.

                                                                                                                                                                                                                                                                                      It seems fairly obvious that these tasks will have to be aborted but I'll hold off a bit in case anyone has any questions or DEK wants to try and retrieve a file for closer examination.

                                                                                                                                                                                                                                                                                      Best,
                                                                                                                                                                                                                                                                                      Snags

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                                                                                                                                                                                                                                                                                      Message 6070 - Posted 19 Mar 2016 23:04:23 UTC - in response to Message 6062.

                                                                                                                                                                                                                                                                                        With 3.72, no successful work units on any Linux hosts. Tested across multiple distributions (all 64-bit). They are running to completion, but then reporting output file missing.


                                                                                                                                                                                                                                                                                        I am seeing the same thing, NO successful work units at all. Most run to completion (for me that is a 6 hour run time) but a number are also failing in less than an hour.
                                                                                                                                                                                                                                                                                        This is on a 64 bit Linux host.

                                                                                                                                                                                                                                                                                        Conan

                                                                                                                                                                                                                                                                                        ____________

                                                                                                                                                                                                                                                                                        Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                        Message 6071 - Posted 21 Mar 2016 20:22:39 UTC

                                                                                                                                                                                                                                                                                          An error also with the T0599_ batch, wu 3322377

                                                                                                                                                                                                                                                                                          - Unhandled Exception Record -
                                                                                                                                                                                                                                                                                          Reason: Access Violation (0xc0000005) at address 0x013CC270 write attempt to address 0x017D7EC1

                                                                                                                                                                                                                                                                                          Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                          Message 6072 - Posted 23 Mar 2016 6:36:46 UTC

                                                                                                                                                                                                                                                                                            All my wus

                                                                                                                                                                                                                                                                                            Task T0559_centroid_only_ab_20315_1936_0 exited with zero status but no 'finished' file


                                                                                                                                                                                                                                                                                            Wait for finish and report

                                                                                                                                                                                                                                                                                            Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                            Message 6073 - Posted 23 Mar 2016 10:33:59 UTC

                                                                                                                                                                                                                                                                                              ALL memory errors, a lot after 50 minutes, in this batch (design5e_ralph_S) for me (win10). I've killed the remain wus and wait for new version.

                                                                                                                                                                                                                                                                                              Trotador

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                                                                                                                                                                                                                                                                                              Message 6074 - Posted 23 Mar 2016 16:03:10 UTC

                                                                                                                                                                                                                                                                                                All WUs continue erroring in Linux. W7 seems Ok, rest of windows is a mix of failure/success

                                                                                                                                                                                                                                                                                                rjs5

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                                                                                                                                                                                                                                                                                                Message 6075 - Posted 23 Mar 2016 17:02:58 UTC - in response to Message 6074.

                                                                                                                                                                                                                                                                                                  They are seem to be failing ... Windows takes longer.


                                                                                                                                                                                                                                                                                                  Linux64 jobs are failing after a minute with a Ralph assert().

                                                                                                                                                                                                                                                                                                  example:

                                                                                                                                                                                                                                                                                                  Task ID 3789265
                                                                                                                                                                                                                                                                                                  Name design5e_ralph_S_7946_buriedtrp_SAVE_ALL_OUT_20317_2727_1
                                                                                                                                                                                                                                                                                                  Workunit 3328949


                                                                                                                                                                                                                                                                                                  Watchdog active.
                                                                                                                                                                                                                                                                                                  std::cerr: Exception was thrown:
                                                                                                                                                                                                                                                                                                  chi angle must be between -180 and 180: -nan

                                                                                                                                                                                                                                                                                                  </stderr_txt>
                                                                                                                                                                                                                                                                                                  ]]>


                                                                                                                                                                                                                                                                                                  Windows 10 are failing after an hour with the SEGVIO abort.

                                                                                                                                                                                                                                                                                                  example:

                                                                                                                                                                                                                                                                                                  Task ID 3788776
                                                                                                                                                                                                                                                                                                  Name design5e_ralph_S_7946_buriedtrp_SAVE_ALL_OUT_20317_77_1
                                                                                                                                                                                                                                                                                                  Workunit 3326299
                                                                                                                                                                                                                                                                                                  Created 23 Mar 2016 13:44:58 UTC


                                                                                                                                                                                                                                                                                                  Watchdog active.


                                                                                                                                                                                                                                                                                                  Unhandled Exception Detected...

                                                                                                                                                                                                                                                                                                  - Unhandled Exception Record -
                                                                                                                                                                                                                                                                                                  Reason: Access Violation (0xc0000005) at address 0x01D9CA02 read attempt to address 0x21380008

                                                                                                                                                                                                                                                                                                  Engaging BOINC Windows Runtime Debugger...




                                                                                                                                                                                                                                                                                                  Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                  Message 6077 - Posted 30 Mar 2016 14:35:35 UTC

                                                                                                                                                                                                                                                                                                    This new version seems to be better than before

                                                                                                                                                                                                                                                                                                    3793690

                                                                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                                                                    DONE :: 2 starting structures 7177.58 cpu seconds
                                                                                                                                                                                                                                                                                                    This process generated 98 decoys from 98 attempts
                                                                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                                                                    BOINC :: WS_max 2.18317e+008

                                                                                                                                                                                                                                                                                                    BOINC :: Watchdog shutting down...
                                                                                                                                                                                                                                                                                                    BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                                                                                                                                                                                    called boinc_finish

                                                                                                                                                                                                                                                                                                    Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                    Message 6082 - Posted 24 Jul 2016 21:04:46 UTC

                                                                                                                                                                                                                                                                                                      Some errors
                                                                                                                                                                                                                                                                                                      3831890
                                                                                                                                                                                                                                                                                                      3831889
                                                                                                                                                                                                                                                                                                      etc

                                                                                                                                                                                                                                                                                                      ERROR: unrecognized residue SUG
                                                                                                                                                                                                                                                                                                      ERROR:: Exit from: ..\..\..\src\core\io\pose_from_sfr\PoseFromSFRBuilder.cc line: 1030
                                                                                                                                                                                                                                                                                                      BOINC:: Error reading and gzipping output datafile: default.out
                                                                                                                                                                                                                                                                                                      called boinc_finish

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                                                                                                                                                                                                                                                                                                      Message 6084 - Posted 5 Oct 2016 8:14:46 UTC

                                                                                                                                                                                                                                                                                                        No problems on Win10 64bit for 3.74 app

                                                                                                                                                                                                                                                                                                        Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                        Message 6085 - Posted 5 Oct 2016 8:20:28 UTC

                                                                                                                                                                                                                                                                                                          I'm crunching also 3.75 without problems

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                                                                                                                                                                                                                                                                                                          Message 6086 - Posted 13 Oct 2016 5:40:54 UTC

                                                                                                                                                                                                                                                                                                            Do you plan to pass it on Rosetta or need more tests??

                                                                                                                                                                                                                                                                                                            Dr. Merkwürdigliebe

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                                                                                                                                                                                                                                                                                                            Message 6090 - Posted 2 Nov 2016 22:09:43 UTC

                                                                                                                                                                                                                                                                                                              One task tanked...

                                                                                                                                                                                                                                                                                                              http://ralph.bakerlab.org/result.php?resultid=3950020

                                                                                                                                                                                                                                                                                                              krypton

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                                                                                                                                                                                                                                                                                                              Message 6091 - Posted 2 Nov 2016 22:45:40 UTC - in response to Message 6090.

                                                                                                                                                                                                                                                                                                                Thanks for the report!

                                                                                                                                                                                                                                                                                                                For this particular job only 7 out of 300 have failed. Not sure why. Your computer also ran a couple other instances of the same job and it worked fine. So it's not your computer in particular.

                                                                                                                                                                                                                                                                                                                I'll look into it more carefully.

                                                                                                                                                                                                                                                                                                                Dr Who Fan
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                                                                                                                                                                                                                                                                                                                Message 6092 - Posted 7 Nov 2016 5:02:03 UTC

                                                                                                                                                                                                                                                                                                                  Minirosetta 3.73 Task ran about 8 seconds before crashing:
                                                                                                                                                                                                                                                                                                                  Name: NHE1_14-423_symm_hyb_cst_01_t000__krypton_SAVE_ALL_OUT_03_09_20559_416_1

                                                                                                                                                                                                                                                                                                                  ERROR: [ERROR] Error opening symmetry file '4czb.symm'
                                                                                                                                                                                                                                                                                                                  ERROR:: Exit from: ..\..\..\src\core\conformation\symmetry\SymmData.cc line: 392
                                                                                                                                                                                                                                                                                                                  BOINC:: Error reading and gzipping output datafile: default.out
                                                                                                                                                                                                                                                                                                                  called boinc_finish

                                                                                                                                                                                                                                                                                                                  ____________

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                                                                                                                                                                                                                                                                                                                  Message 6093 - Posted 8 Nov 2016 6:48:03 UTC - in response to Message 6092.

                                                                                                                                                                                                                                                                                                                    Minirosetta 3.73 Task ran about 8 seconds before crashing:
                                                                                                                                                                                                                                                                                                                    Name: NHE1_14-423_symm_hyb_cst_01_t000__krypton_SAVE_ALL_OUT_03_09_20559_416_1

                                                                                                                                                                                                                                                                                                                    ERROR: [ERROR] Error opening symmetry file '4czb.symm'
                                                                                                                                                                                                                                                                                                                    ERROR:: Exit from: ..\..\..\src\core\conformation\symmetry\SymmData.cc line: 392
                                                                                                                                                                                                                                                                                                                    BOINC:: Error reading and gzipping output datafile: default.out
                                                                                                                                                                                                                                                                                                                    called boinc_finish


                                                                                                                                                                                                                                                                                                                    Same here, on Win10 64bit

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                                                                                                                                                                                                                                                                                                                    Message 6123 - Posted 13 Jan 2017 13:06:37 UTC

                                                                                                                                                                                                                                                                                                                      3993469

                                                                                                                                                                                                                                                                                                                      ERROR: in::file::boinc_wu_zip 11mers_cis_c.119.1.zip does not exist!
                                                                                                                                                                                                                                                                                                                      ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 200
                                                                                                                                                                                                                                                                                                                      BOINC:: Error reading and gzipping output datafile: default.out
                                                                                                                                                                                                                                                                                                                      20:44:49 (16282): called boinc_finish(1)

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                                                                                                                                                                                                                                                                                                                      Message 6124 - Posted 20 Jan 2017 16:52:44 UTC

                                                                                                                                                                                                                                                                                                                        The Windows 32bit app was rebuilt on a 32bit VM and the database was updated to include some missing files.


                                                                                                                                                                                                                                                                                                                        When a native 64 bit app?

                                                                                                                                                                                                                                                                                                                        Crystal Pellet

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                                                                                                                                                                                                                                                                                                                        Message 6125 - Posted 24 Jan 2017 11:57:43 UTC - in response to Message 6124.

                                                                                                                                                                                                                                                                                                                          Why is the outcome of this task on Android an error?

                                                                                                                                                                                                                                                                                                                          It looked like it was running well.

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                                                                                                                                                                                                                                                                                                                          Message 6126 - Posted 26 Jan 2017 21:12:00 UTC

                                                                                                                                                                                                                                                                                                                            On Win10 64 bit after 1h...
                                                                                                                                                                                                                                                                                                                            3998721
                                                                                                                                                                                                                                                                                                                            3998681

                                                                                                                                                                                                                                                                                                                            <message>
                                                                                                                                                                                                                                                                                                                            (unknown error) - exit code -529697949 (0xe06d7363)
                                                                                                                                                                                                                                                                                                                            </message>
                                                                                                                                                                                                                                                                                                                            Unhandled Exception Detected...

                                                                                                                                                                                                                                                                                                                            - Unhandled Exception Record -
                                                                                                                                                                                                                                                                                                                            Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x76ADA832

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                                                                                                                                                                                                                                                                                                                            Message 6127 - Posted 27 Jan 2017 10:42:48 UTC - in response to Message 6126.

                                                                                                                                                                                                                                                                                                                              On Win10 64 bit after 1h...
                                                                                                                                                                                                                                                                                                                              3998721
                                                                                                                                                                                                                                                                                                                              3998681

                                                                                                                                                                                                                                                                                                                              - Unhandled Exception Record -
                                                                                                                                                                                                                                                                                                                              Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x76ADA832


                                                                                                                                                                                                                                                                                                                              Up to now ALL 3.73 "psh00594_fold_and_dock" same error
                                                                                                                                                                                                                                                                                                                              Please, stop this batch

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                                                                                                                                                                                                                                                                                                                              Message 6128 - Posted 2 Feb 2017 6:40:41 UTC - in response to Message 5861.

                                                                                                                                                                                                                                                                                                                                I did turn on SSE for the windows app.


                                                                                                                                                                                                                                                                                                                                August 2015. And now?? Why not?

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                                                                                                                                                                                                                                                                                                                                Message 6130 - Posted 5 Feb 2017 7:12:26 UTC - in response to Message 6125.

                                                                                                                                                                                                                                                                                                                                  You might switch to either the main Rosetta project or other projects that supports Android. This beta project isn't well supported.

                                                                                                                                                                                                                                                                                                                                  Check the projects list at http://boinc.berkeley.edu/projects.php

                                                                                                                                                                                                                                                                                                                                  OR

                                                                                                                                                                                                                                                                                                                                  https://boincstats.com/en/forum/9/1774,1
                                                                                                                                                                                                                                                                                                                                  (That's a pretty comprehensive list of all the projects and what they support so it'll take a little squinting and time to run through it all.)

                                                                                                                                                                                                                                                                                                                                  Best,

                                                                                                                                                                                                                                                                                                                                  Yavanius

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                                                                                                                                                                                                                                                                                                                                  Message 6131 - Posted 9 Feb 2017 7:48:35 UTC

                                                                                                                                                                                                                                                                                                                                    All "frx2dock_symmdock" wus are validate errors

                                                                                                                                                                                                                                                                                                                                    # cpu_run_time_pref: 7200
                                                                                                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                                                                                                    DONE :: 600 starting structures 6300.73 cpu seconds
                                                                                                                                                                                                                                                                                                                                    This process generated 600 decoys from 600 attempts
                                                                                                                                                                                                                                                                                                                                    ======================================================
                                                                                                                                                                                                                                                                                                                                    BOINC :: WS_max 2.62869e+008

                                                                                                                                                                                                                                                                                                                                    BOINC :: Watchdog shutting down...
                                                                                                                                                                                                                                                                                                                                    BOINC :: BOINC support services shutting down cleanly ...
                                                                                                                                                                                                                                                                                                                                    called boinc_finish

                                                                                                                                                                                                                                                                                                                                    Validate state Invalid
                                                                                                                                                                                                                                                                                                                                    Claimed credit 51.01861043964704
                                                                                                                                                                                                                                                                                                                                    Granted credit 0
                                                                                                                                                                                                                                                                                                                                    application version 3.73

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                                                                                                                                                                                                                                                                                                                                    Message 6132 - Posted 9 Feb 2017 8:56:58 UTC

                                                                                                                                                                                                                                                                                                                                      And, please, 8 mb of upload is too much....

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                                                                                                                                                                                                                                                                                                                                      Message 6133 - Posted 10 Feb 2017 4:35:31 UTC

                                                                                                                                                                                                                                                                                                                                        All WUs are failing on my Moto X 1st Gen...

                                                                                                                                                                                                                                                                                                                                        Doesn't seem to be any error messages. Everything seems to be running just fine according to the log but it failed.

                                                                                                                                                                                                                                                                                                                                        http://ralph.bakerlab.org/results.php?hostid=36838


                                                                                                                                                                                                                                                                                                                                        Also on my Galaxy Tab S2, about half are failing:

                                                                                                                                                                                                                                                                                                                                        http://ralph.bakerlab.org/results.php?hostid=38725

                                                                                                                                                                                                                                                                                                                                        ~Y

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                                                                                                                                                                                                                                                                                                                                        Message 6134 - Posted 16 Feb 2017 10:04:39 UTC

                                                                                                                                                                                                                                                                                                                                          Now batch for 3.73 wus for windows....
                                                                                                                                                                                                                                                                                                                                          Are we testing 3.77??

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                                                                                                                                                                                                                                                                                                                                          Message 6135 - Posted 17 Feb 2017 15:33:49 UTC - in response to Message 6133.

                                                                                                                                                                                                                                                                                                                                            It seems almost all the 'FAVES' WUs error out and looks toward the end but most of the 'VALL' seem to complete on the 2 android devices previously mentioned.

                                                                                                                                                                                                                                                                                                                                            It seems a # of other devices are having issues with the FAVES too.

                                                                                                                                                                                                                                                                                                                                            Unfortunately, it seemsthe FAVES get served more often. Unless I hear something about addressing the high errors, I'm gonna abort the FAVES and see how the VALL continue to do.

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                                                                                                                                                                                                                                                                                                                                            Message 6138 - Posted 4 Mar 2017 8:37:44 UTC - in response to Message 6134.

                                                                                                                                                                                                                                                                                                                                              Now batch for 3.73 wus for windows....
                                                                                                                                                                                                                                                                                                                                              Are we testing 3.77??


                                                                                                                                                                                                                                                                                                                                              Again, 3.73 for win
                                                                                                                                                                                                                                                                                                                                              Is 3.77 only for android?

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                                                                                                                                                                                                                                                                                                                                              Message 6143 - Posted 17 Mar 2017 3:02:13 UTC

                                                                                                                                                                                                                                                                                                                                                I just updated the android app to 3.78. 3.78 is only being tested for android.
                                                                                                                                                                                                                                                                                                                                                ____________

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                                                                                                                                                                                                                                                                                                                                                Message 6144 - Posted 17 Mar 2017 15:02:24 UTC - in response to Message 6143.

                                                                                                                                                                                                                                                                                                                                                  I just updated the android app to 3.78. 3.78 is only being tested for android.


                                                                                                                                                                                                                                                                                                                                                  What's new in this version? Only bugfix??

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                                                                                                                                                                                                                                                                                                                                                  Message 6145 - Posted 17 Mar 2017 15:52:28 UTC

                                                                                                                                                                                                                                                                                                                                                    3.78 uses the latest Rosetta code which has gone through some refactoring, mainly for scripting XML compliance. There are also changes in the cyclic peptide folding protocol. I also finally fixed a bug in the BOINC API which was causing random seg faults on my test device but it looks like there are still some bugs on other android platforms/versions (judging from the few jobs that have already been processed).
                                                                                                                                                                                                                                                                                                                                                    ____________

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                                                                                                                                                                                                                                                                                                                                                    Message 6146 - Posted 17 Mar 2017 15:57:12 UTC - in response to Message 6145.

                                                                                                                                                                                                                                                                                                                                                      3.78 uses the latest Rosetta code which has gone through some refactoring, mainly for scripting XML compliance. There are also changes in the cyclic peptide folding protocol. I also finally fixed a bug in the BOINC API which was causing random seg faults on my test device but it looks like there are still some bugs on other android platforms/versions (judging from the few jobs that have already been processed).



                                                                                                                                                                                                                                                                                                                                                      Well done.
                                                                                                                                                                                                                                                                                                                                                      Do you plan to update the non-android code to test it on pc and not only on smartphone??

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                                                                                                                                                                                                                                                                                                                                                      Message 6147 - Posted 17 Mar 2017 17:48:25 UTC - in response to Message 6146.

                                                                                                                                                                                                                                                                                                                                                        Eventually when it's necessary, but I'm focusing on android for the moment. The XML changes are not backwards compatible so the next update will likely be under a new app name. However, there hasn't been a significant research related need to update the pc platforms yet.

                                                                                                                                                                                                                                                                                                                                                        There are a lot of android users joining our project and there's potential for significantly more in the near future.


                                                                                                                                                                                                                                                                                                                                                        ____________

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                                                                                                                                                                                                                                                                                                                                                        Message 6148 - Posted 20 Mar 2017 7:59:43 UTC - in response to Message 6147.

                                                                                                                                                                                                                                                                                                                                                          There are a lot of android users joining our project and there's potential for significantly more in the near future.


                                                                                                                                                                                                                                                                                                                                                          You have your reasons, but i continue to consider android tech "marginal" compared to cpus.
                                                                                                                                                                                                                                                                                                                                                          Meantime i chrunch with my phone :-)

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                                                                                                                                                                                                                                                                                                                                                          Message 6150 - Posted 28 Mar 2017 8:24:49 UTC

                                                                                                                                                                                                                                                                                                                                                            Last modified: 28 Mar 2017 8:39:51 UTC

                                                                                                                                                                                                                                                                                                                                                            I'm seeing a lot of early errors from the 3.80 android app so I'll probably revert to the previous version after letting it run through the night.

                                                                                                                                                                                                                                                                                                                                                            edit: I reverted back to 3.79 as 3.81.
                                                                                                                                                                                                                                                                                                                                                            ____________

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                                                                                                                                                                                                                                                                                                                                                            Message 6152 - Posted 29 Mar 2017 23:42:12 UTC

                                                                                                                                                                                                                                                                                                                                                              Last modified: 29 Mar 2017 23:59:11 UTC

                                                                                                                                                                                                                                                                                                                                                              I updated the android app to 3.82. I think I managed to work out the major issues.
                                                                                                                                                                                                                                                                                                                                                              ____________

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                                                                                                                                                                                                                                                                                                                                                              Message 6153 - Posted 30 Mar 2017 16:03:30 UTC - in response to Message 6152.

                                                                                                                                                                                                                                                                                                                                                                I updated the android app to 3.82. I think I managed to work out the major issues.


                                                                                                                                                                                                                                                                                                                                                                No problems here with android 5.1

                                                                                                                                                                                                                                                                                                                                                                P.S. Update the title of the thread.... :-)

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                                                                                                                                                                                                                                                                                                                                                                Message 6154 - Posted 1 Apr 2017 11:13:17 UTC

                                                                                                                                                                                                                                                                                                                                                                  This wu ends correctly, but has some errors:

                                                                                                                                                                                                                                                                                                                                                                  WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                  WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                  WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                  WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                  ======================================================
                                                                                                                                                                                                                                                                                                                                                                  DONE :: 1 starting structures 25707.6 cpu seconds
                                                                                                                                                                                                                                                                                                                                                                  This process generated 1 decoys from 1 attempts
                                                                                                                                                                                                                                                                                                                                                                  ======================================================

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                                                                                                                                                                                                                                                                                                                                                                  Message 6155 - Posted 1 Apr 2017 18:04:32 UTC - in response to Message 6154.

                                                                                                                                                                                                                                                                                                                                                                    Yes, I've noticed these warnings on some devices but can't reproduce them on mine. I'll have to figure out what libraries aren't being used but linked against. Thanks!

                                                                                                                                                                                                                                                                                                                                                                    ____________

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                                                                                                                                                                                                                                                                                                                                                                    Message 6156 - Posted 3 Apr 2017 8:01:06 UTC - in response to Message 6155.

                                                                                                                                                                                                                                                                                                                                                                      Yes, I've noticed these warnings on some devices but can't reproduce them on mine.


                                                                                                                                                                                                                                                                                                                                                                      After 13h of calculations, i've killed this wus

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                                                                                                                                                                                                                                                                                                                                                                      Message 6157 - Posted 4 Apr 2017 5:47:11 UTC

                                                                                                                                                                                                                                                                                                                                                                        These work units should eventually finish. I suggest not killing them. We'll see if we can reduce the run times for future batches.
                                                                                                                                                                                                                                                                                                                                                                        ____________

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                                                                                                                                                                                                                                                                                                                                                                        Message 6158 - Posted 5 Apr 2017 5:28:23 UTC - in response to Message 6157.

                                                                                                                                                                                                                                                                                                                                                                          These work units should eventually finish. I suggest not killing them.


                                                                                                                                                                                                                                                                                                                                                                          I've another one. 99,1% after 18h.
                                                                                                                                                                                                                                                                                                                                                                          I hope to take 500 points for this wu :-P

                                                                                                                                                                                                                                                                                                                                                                          zioriga

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                                                                                                                                                                                                                                                                                                                                                                          Message 6159 - Posted 5 Apr 2017 11:30:13 UTC

                                                                                                                                                                                                                                                                                                                                                                            Now I'm at 99.5 after 31,5h
                                                                                                                                                                                                                                                                                                                                                                            On my S3
                                                                                                                                                                                                                                                                                                                                                                            ____________

                                                                                                                                                                                                                                                                                                                                                                            Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                            Message 6160 - Posted 5 Apr 2017 13:53:00 UTC - in response to Message 6159.

                                                                                                                                                                                                                                                                                                                                                                              Now I'm at 99.5 after 31,5h
                                                                                                                                                                                                                                                                                                                                                                              On my S3


                                                                                                                                                                                                                                                                                                                                                                              These are wus for I7 or Ryzen, not for my little arm... :-(

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                                                                                                                                                                                                                                                                                                                                                                              Message 6162 - Posted 5 Apr 2017 18:00:08 UTC

                                                                                                                                                                                                                                                                                                                                                                                I agree. I'll talk to the researcher. The long run time is due to filtering logic. Even on one of our local machines it takes about an hour to generate a model (after quite a few filtered attempts).
                                                                                                                                                                                                                                                                                                                                                                                ____________

                                                                                                                                                                                                                                                                                                                                                                                Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                Message 6163 - Posted 6 Apr 2017 5:37:47 UTC - in response to Message 6158.

                                                                                                                                                                                                                                                                                                                                                                                  I've another one. 99,1% after 18h.


                                                                                                                                                                                                                                                                                                                                                                                  99,6 after 37h....a small agony
                                                                                                                                                                                                                                                                                                                                                                                  Now, i think 1000 points is earned!!! :-P

                                                                                                                                                                                                                                                                                                                                                                                  Vikram K. Mulligan

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                                                                                                                                                                                                                                                                                                                                                                                  Message 6164 - Posted 6 Apr 2017 6:26:44 UTC - in response to Message 6162.

                                                                                                                                                                                                                                                                                                                                                                                    Although these slow jobs take longer to find a solution, they are heavily biased to sampling regions of conformation space that these peptides can actually access and which are relevant to our interests. That is, we might make the sampling rate slower by a factor of 100, but we're perhaps 1,000 or 10,000 times more likely for any given sample to be "useful". We're crunching numbers more intensively to produce better results instead of just relying on more sampling. I can say that the jobs that we're running now are successfully sampling the native state with fewer samples in cases in which incredible amounts of the old, naïve sampling produced nothing near the native state.

                                                                                                                                                                                                                                                                                                                                                                                    I'm not sure that we can make the sampling faster (i.e. produce more samples per CPU-hour), but the credit earned per sample should be proportional to the CPU-hours spent per sample, no?

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                                                                                                                                                                                                                                                                                                                                                                                    Message 6165 - Posted 6 Apr 2017 9:08:22 UTC - in response to Message 6164.

                                                                                                                                                                                                                                                                                                                                                                                      Last modified: 6 Apr 2017 9:08:51 UTC

                                                                                                                                                                                                                                                                                                                                                                                      We're crunching numbers more intensively to produce better results instead of just relying on more sampling.


                                                                                                                                                                                                                                                                                                                                                                                      This is not a problem, i like the science you do!!

                                                                                                                                                                                                                                                                                                                                                                                      the credit earned per sample should be proportional to the CPU-hours spent per sample, no?


                                                                                                                                                                                                                                                                                                                                                                                      I'm not sure. If i crunch a decoy in 2h with, for example, a Ryzen 1800x and the same decoy with my Huawei in 30h, i take the same points?

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                                                                                                                                                                                                                                                                                                                                                                                      Message 6166 - Posted 6 Apr 2017 18:33:53 UTC - in response to Message 6165.

                                                                                                                                                                                                                                                                                                                                                                                        Since the android app is a separate application, the credit per decoy running average will only use results from android jobs. But there is the issue of possibly adding a correction factor to try to normalize the credits coming from the standard app vs the arm app given the same protocol. I'll have to look into this and it would require running some benchmarks and updating the standard app. The arm app is running the latest Rosetta version.
                                                                                                                                                                                                                                                                                                                                                                                        ____________

                                                                                                                                                                                                                                                                                                                                                                                        Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                        Message 6167 - Posted 7 Apr 2017 5:32:42 UTC - in response to Message 6163.

                                                                                                                                                                                                                                                                                                                                                                                          99,6 after 37h....a small agony


                                                                                                                                                                                                                                                                                                                                                                                          Now 99,7% after 57h.
                                                                                                                                                                                                                                                                                                                                                                                          Strange behaviour, it continues to slow down.
                                                                                                                                                                                                                                                                                                                                                                                          I don't think i'll finish before deadline (tomorrow morning).

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                                                                                                                                                                                                                                                                                                                                                                                          Message 6168 - Posted 9 Apr 2017 13:09:30 UTC - in response to Message 6164.

                                                                                                                                                                                                                                                                                                                                                                                            Although these slow jobs take longer to find a solution, they are heavily biased to sampling regions of conformation space that these peptides can actually access and which are relevant to our interests.


                                                                                                                                                                                                                                                                                                                                                                                            i'm afraid, but it's 99,8% after 105h. I've killed this wus.

                                                                                                                                                                                                                                                                                                                                                                                            Admpicard999

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                                                                                                                                                                                                                                                                                                                                                                                            Message 6169 - Posted 9 Apr 2017 23:53:40 UTC - in response to Message 6168.

                                                                                                                                                                                                                                                                                                                                                                                              Hi:

                                                                                                                                                                                                                                                                                                                                                                                              I see there are many here who have tasks that have been running for quite some time. I have three that have gone well past their reply by time: one running for 74 hours at 99.2%, a second 29 hours at 98.1% and a third at 30 hors at 98.2%. This is using a Pixel on Android 7.1.2 (newest). Do I let them keep going or do I stop them?

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                                                                                                                                                                                                                                                                                                                                                                                              Message 6170 - Posted 10 Apr 2017 8:22:37 UTC - in response to Message 6169.

                                                                                                                                                                                                                                                                                                                                                                                                Last modified: 10 Apr 2017 8:23:56 UTC

                                                                                                                                                                                                                                                                                                                                                                                                Do I let them keep going or do I stop them?


                                                                                                                                                                                                                                                                                                                                                                                                I know these working units are important for admins/developers, but i kill all "ralphtest_c." wus

                                                                                                                                                                                                                                                                                                                                                                                                All with these warnings:
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6fffffff arg 0x2
                                                                                                                                                                                                                                                                                                                                                                                                WARNING: linker: ../../projects/ralph.bakerlab.org/minirosetta_android_3.83_arm-android-linux-gnu: unused DT entry: type 0x6ffffffe arg 0x2828

                                                                                                                                                                                                                                                                                                                                                                                                Profile dekim
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                                                                                                                                                                                                                                                                                                                                                                                                Message 6171 - Posted 11 Apr 2017 19:14:40 UTC - in response to Message 6169.

                                                                                                                                                                                                                                                                                                                                                                                                  please keep those going.
                                                                                                                                                                                                                                                                                                                                                                                                  ____________

                                                                                                                                                                                                                                                                                                                                                                                                  Profile dekim
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                                                                                                                                                                                                                                                                                                                                                                                                  Message 6172 - Posted 11 Apr 2017 19:15:25 UTC - in response to Message 6170.

                                                                                                                                                                                                                                                                                                                                                                                                    Last modified: 11 Apr 2017 19:16:04 UTC

                                                                                                                                                                                                                                                                                                                                                                                                    You can ignore those warnings. They are harmless. I will hopefully have those warnings removed in the next release soon.
                                                                                                                                                                                                                                                                                                                                                                                                    ____________

                                                                                                                                                                                                                                                                                                                                                                                                    Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                                    Message 6173 - Posted 12 Apr 2017 6:46:43 UTC - in response to Message 6171.

                                                                                                                                                                                                                                                                                                                                                                                                      please keep those going.


                                                                                                                                                                                                                                                                                                                                                                                                      50h to crunch 0,1% i think 2 options:
                                                                                                                                                                                                                                                                                                                                                                                                      - a bug in "ralph_test_c." wus
                                                                                                                                                                                                                                                                                                                                                                                                      - my smartphone is too little to crunch these wus and i need an S8

                                                                                                                                                                                                                                                                                                                                                                                                      I'll try another wu

                                                                                                                                                                                                                                                                                                                                                                                                      Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                                      Message 6174 - Posted 12 Apr 2017 13:16:43 UTC

                                                                                                                                                                                                                                                                                                                                                                                                        I just finished correctly a "ralp_test_c." wu after 20k seconds.
                                                                                                                                                                                                                                                                                                                                                                                                        But these wus are different from problematic "ralphtest_c."??

                                                                                                                                                                                                                                                                                                                                                                                                        Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                                        Message 6175 - Posted 12 Apr 2017 13:18:16 UTC - in response to Message 6173.

                                                                                                                                                                                                                                                                                                                                                                                                          - a bug in "ralph_test_c." wus

                                                                                                                                                                                                                                                                                                                                                                                                          "ralphtest_c.", i mean

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                                                                                                                                                                                                                                                                                                                                                                                                          Message 6177 - Posted 19 Apr 2017 8:22:33 UTC

                                                                                                                                                                                                                                                                                                                                                                                                            Last modified: 19 Apr 2017 8:26:46 UTC

                                                                                                                                                                                                                                                                                                                                                                                                            Here again.
                                                                                                                                                                                                                                                                                                                                                                                                            99,9% after 111h of crunching.
                                                                                                                                                                                                                                                                                                                                                                                                            The deadline was 3 days ago.....
                                                                                                                                                                                                                                                                                                                                                                                                            4044862

                                                                                                                                                                                                                                                                                                                                                                                                            zioriga

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                                                                                                                                                                                                                                                                                                                                                                                                            Message 6178 - Posted 20 Apr 2017 5:05:33 UTC

                                                                                                                                                                                                                                                                                                                                                                                                              I have this problem:

                                                                                                                                                                                                                                                                                                                                                                                                              In my "Tasks for user" page I have 4 WU in progress, but ....... on my smartphone I have 5 WUs. :-)

                                                                                                                                                                                                                                                                                                                                                                                                              I don't know if this is a problem specific to android app or is a general problem
                                                                                                                                                                                                                                                                                                                                                                                                              ____________

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                                                                                                                                                                                                                                                                                                                                                                                                              Message 6179 - Posted 21 Apr 2017 6:59:19 UTC - in response to Message 6177.

                                                                                                                                                                                                                                                                                                                                                                                                                99,9% after 111h of crunching.


                                                                                                                                                                                                                                                                                                                                                                                                                Still 99,9% after 145 hours.
                                                                                                                                                                                                                                                                                                                                                                                                                What should i do?

                                                                                                                                                                                                                                                                                                                                                                                                                mmonnin

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                                                                                                                                                                                                                                                                                                                                                                                                                Message 6180 - Posted 21 Apr 2017 9:12:08 UTC - in response to Message 6179.

                                                                                                                                                                                                                                                                                                                                                                                                                  I aborted those that I had at 99%. The others just timed out while the server was down.

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                                                                                                                                                                                                                                                                                                                                                                                                                  Message 6181 - Posted 22 Apr 2017 9:21:06 UTC - in response to Message 6180.

                                                                                                                                                                                                                                                                                                                                                                                                                    I aborted those that I had at 99%.


                                                                                                                                                                                                                                                                                                                                                                                                                    After 150h i quit.
                                                                                                                                                                                                                                                                                                                                                                                                                    I think it's a bug of these wus
                                                                                                                                                                                                                                                                                                                                                                                                                    No problems with "ab_12_01_...." wus

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                                                                                                                                                                                                                                                                                                                                                                                                                    Message 6182 - Posted 26 Apr 2017 7:14:09 UTC - in response to Message 6166.

                                                                                                                                                                                                                                                                                                                                                                                                                      Last modified: 26 Apr 2017 7:14:23 UTC

                                                                                                                                                                                                                                                                                                                                                                                                                      The arm app is running the latest Rosetta version.


                                                                                                                                                                                                                                                                                                                                                                                                                      The 3.8 version??

                                                                                                                                                                                                                                                                                                                                                                                                                      Admpicard999

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                                                                                                                                                                                                                                                                                                                                                                                                                      Message 6183 - Posted 4 May 2017 13:58:09 UTC - in response to Message 6182.

                                                                                                                                                                                                                                                                                                                                                                                                                        I have a WU that has been running 215+ hours, now at 99.7%. it's been at 99+ for at least a week. The deadline was now several days ago. At what point to do I give up and cancel the WU?

                                                                                                                                                                                                                                                                                                                                                                                                                        Profile [VENETO] boboviz

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                                                                                                                                                                                                                                                                                                                                                                                                                        Message 6184 - Posted 5 May 2017 18:16:45 UTC - in response to Message 6183.

                                                                                                                                                                                                                                                                                                                                                                                                                          I have a WU that has been running 215+ hours, now at 99.7%. it's been at 99+ for at least a week. The deadline was now several days ago. At what point to do I give up and cancel the WU?


                                                                                                                                                                                                                                                                                                                                                                                                                          Kill it

                                                                                                                                                                                                                                                                                                                                                                                                                          BQL_FFM

                                                                                                                                                                                                                                                                                                                                                                                                                          Joined: Oct 7 16
                                                                                                                                                                                                                                                                                                                                                                                                                          Posts: 1
                                                                                                                                                                                                                                                                                                                                                                                                                          ID: 50687
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                                                                                                                                                                                                                                                                                                                                                                                                                          RAC: 8
                                                                                                                                                                                                                                                                                                                                                                                                                          Message 6185 - Posted 7 May 2017 11:09:35 UTC

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                                                                                                                                                                                                                                                                                                                                                                                                                            Name ab_12_01__vall_2011_1rnbA_vall_2011_9mers_3mers_20564_374_0
                                                                                                                                                                                                                                                                                                                                                                                                                            Workunit 3565236

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                                                                                                                                                                                                                                                                                                                                                                                                                            Name ab_12_01__vall_2011_1lisA_vall_2011_9mers_3mers_20564_373_0
                                                                                                                                                                                                                                                                                                                                                                                                                            Workunit 3565167

                                                                                                                                                                                                                                                                                                                                                                                                                            Tasks aborted, the started again and again after max ca. 60 seconds.

                                                                                                                                                                                                                                                                                                                                                                                                                            Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83


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