Rosetta 4.07

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Message 6575 - Posted: 27 Jun 2018, 19:00:35 UTC

Aufgabe 4876217

Name T0984_rb_06_07_307_454__t000__0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_21068_3326_0
Arbeitspaket 4377228
Erstellt 27 Jun 2018, 12:47:49 UTC
Gesendet 27 Jun 2018, 12:58:40 UTC
Ablaufdatum 6 Jul 2018, 12:58:40 UTC
Empfangen 27 Jun 2018, 17:08:54 UTC
Serverstatus Abgeschlossen
Resultat Berechnungsfehler
Clientstatus Berechnungsfehler
Endstatus -529697949 (0xE06D7363) Unknown error code
Computer ID 24048
Laufzeit 2 Stunden 53 min. 41 sek.
CPU Zeit 2 Stunden 51 min. 41 sek.
Prüfungsstatus Ungültig
Punkte 0.00
max. FLOPS des Gerätes 3.57 GFLOPS
Anwendungsversion Rosetta v4.07
windows_intelx86
Peak working set size 1,458.21 MB
Peak swap size 1,483.23 MB
Peak disk usage 498.49 MB

Stderr Ausgabe
<core_client_version>7.6.22</core_client_version>
<![CDATA[
<message>
(unknown error) - exit code -529697949 (0xe06d7363)
</message>
<stderr_txt>
command: projects/ralph.bakerlab.org/rosetta_4.07_windows_intelx86.exe -run:protocol jd2_scripting @flags_T0984_rb_06_07_307_454__t000__0_C2_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip T0984_rb_06_07_307_454__t000__0_C2_robetta.zip -nstruct 10000 -cpu_run_time 3600 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1858705
Starting watchdog...
Watchdog active.


Unhandled Exception Detected...

- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x7506DB52

Engaging BOINC Windows Runtime Debugger...



********************


BOINC Windows Runtime Debugger Version 7.9.0


Dump Timestamp : 06/27/18 19:07:08
Install Directory : E:\Boinc\1\
Data Directory : E:\Boinc\2
Project Symstore : http://boinc.bakerlab.org/rosetta/symstore
LoadLibraryA( E:\Boinc\2\dbghelp.dll ): GetLastError = 126
Loaded Library : dbghelp.dll
LoadLibraryA( E:\Boinc\2\symsrv.dll ): GetLastError = 126
LoadLibraryA( symsrv.dll ): GetLastError = 126
LoadLibraryA( E:\Boinc\2\srcsrv.dll ): GetLastError = 126
LoadLibraryA( srcsrv.dll ): GetLastError = 126
LoadLibraryA( E:\Boinc\2\version.dll ): GetLastError = 126
Loaded Library : version.dll
Debugger Engine : 4.0.5.0
Symbol Search Path: E:\Boinc\2\slots\7;E:\Boinc\2\projects\ralph.bakerlab.org;srv*E:\Boinc\2\projects\ralph.bakerlab.org\symbols*http://msdl.microsoft.com/download/symbols;srv*E:\Boinc\2\projects\ralph.bakerlab.org\symbols*http://boinc.bakerlab.org/rosetta/symstore


ModLoad: 0000000000e70000 0000000003413000 E:\Boinc\2\projects\ralph.bakerlab.org\rosetta_4.07_windows_intelx86.exe (-exported- Symbols Loaded)
Linked PDB Filename : C:\cygwin\home\boinc\Rosetta_4.07\main\source\ide\VisualStudio\BoincRelease\rosetta_4.07_windows_intelx86.pdb

ModLoad: 0000000077590000 0000000000190000 C:\WINDOWS\SYSTEM32\ntdll.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : wntdll.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 00000000773c0000 00000000000e0000 C:\WINDOWS\System32\KERNEL32.DLL (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wkernel32.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 0000000074f60000 00000000001e4000 C:\WINDOWS\System32\KERNELBASE.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : wkernelbase.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.1

ModLoad: 0000000074e90000 0000000000067000 C:\WINDOWS\System32\WS2_32.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : ws2_32.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 0000000074560000 00000000000c0000 C:\WINDOWS\System32\RPCRT4.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : wrpcrt4.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 0000000073e50000 0000000000020000 C:\WINDOWS\System32\SspiCli.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wsspicli.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000073e40000 000000000000a000 C:\WINDOWS\System32\CRYPTBASE.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : cryptbase.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000074f00000 0000000000058000 C:\WINDOWS\System32\bcryptPrimitives.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : bcryptprimitives.pdb
File Version : 10.0.17134.112 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.112

ModLoad: 0000000075bd0000 0000000000044000 C:\WINDOWS\System32\sechost.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : sechost.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000075250000 000000000018d000 C:\WINDOWS\System32\USER32.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wuser32.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 0000000074a20000 0000000000017000 C:\WINDOWS\System32\win32u.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wwin32u.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000073e70000 0000000000022000 C:\WINDOWS\System32\GDI32.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wgdi32.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000075ec0000 0000000000164000 C:\WINDOWS\System32\gdi32full.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : wgdi32full.pdb
File Version : 10.0.17134.112 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.112

ModLoad: 00000000749a0000 000000000007d000 C:\WINDOWS\System32\msvcp_win.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : msvcp_win.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000074cb0000 000000000011e000 C:\WINDOWS\System32\ucrtbase.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : ucrtbase.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000075c30000 0000000000078000 C:\WINDOWS\System32\ADVAPI32.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : advapi32.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 0000000074dd0000 00000000000bf000 C:\WINDOWS\System32\msvcrt.dll (7.0.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : msvcrt.pdb
File Version : 7.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 7.0.17134.1

ModLoad: 0000000076030000 0000000000026000 C:\WINDOWS\System32\IMM32.DLL (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : wimm32.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 0000000075c20000 000000000000f000 C:\WINDOWS\System32\kernel.appcore.dll (6.2.17134.112) (-exported- Symbols Loaded)
Linked PDB Filename : Kernel.Appcore.pdb
File Version : 10.0.17134.112 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.112

ModLoad: 0000000072850000 0000000000029000 C:\WINDOWS\SYSTEM32\ntmarta.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : ntmarta.pdb
File Version : 10.0.17134.161 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Betriebssystem Microsoft&#174; Windows&#174;
Product Version : 10.0.17134.161

ModLoad: 000000001dd60000 0000000000182000 C:\WINDOWS\SYSTEM32\dbghelp.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : dbghelp.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1

ModLoad: 00000000738e0000 0000000000008000 C:\WINDOWS\SYSTEM32\version.dll (6.2.17134.1) (-exported- Symbols Loaded)
Linked PDB Filename : version.pdb
File Version : 10.0.17134.1 (WinBuild.160101.0800)
Company Name : Microsoft Corporation
Product Name : Microsoft&#174; Windows&#174; Operating System
Product Version : 10.0.17134.1



*** Dump of the Process Statistics: ***

- I/O Operations Counters -
Read: 74136, Write: 0, Other 12500

- I/O Transfers Counters -
Read: 0, Write: 192561, Other 0

- Paged Pool Usage -
QuotaPagedPoolUsage: 246392, QuotaPeakPagedPoolUsage: 246520
QuotaNonPagedPoolUsage: 30792, QuotaPeakNonPagedPoolUsage: 34872

- Virtual Memory Usage -
VirtualSize: 2074669056, PeakVirtualSize: 2137055232

- Pagefile Usage -
PagefileUsage: 931786752, PeakPagefileUsage: 1555279872

- Working Set Size -
WorkingSetSize: 916430848, PeakWorkingSetSize: 1529044992, PageFaultCount: 14796678

*** Dump of thread ID 6864 (state: Waiting): ***

- Information -
Status: Wait Reason: UserRequest, , Kernel Time: 471875008.000000, User Time: 102551248896.000000, Wait Time: 79344368.000000

- Unhandled Exception Record -
Reason: Out Of Memory (C++ Exception) (0xe06d7363) at address 0x7506DB52

- Registers -
eax=0a1ec2b8 ebx=0a1ec364 ecx=00000003 edx=00000000 esi=035e1c60 edi=03a14c54
eip=7506db52 esp=0a1ec2b8 ebp=0a1ec310
cs=0023 ss=002b ds=002b es=002b fs=0053 gs=002b efl=00000216

- Callstack -
ChildEBP RetAddr Args to Child
0a1ec310 0114ac4b e06d7363 00000001 00000003 0a1ec348 KERNELBASE!RaiseException+0x0
0a1ec354 01152854 0a1ec364 03a14c54 035e29a0 035e29a8 rosetta_4.07_windows_intelx86!xmlParserInputRead+0x0
0a1ec370 01151b6e 0a1ec384 014c939f 004d5dc3 0a1ec3b4 rosetta_4.07_windows_intelx86!xmlParserInputRead+0x0
0a1ec378 014c939f 004d5dc3 0a1ec3b4 014c6323 000005e5 rosetta_4.07_windows_intelx86!xmlParserInputRead+0x0
0a1ec384 014c6323 000005e5 d7f9cfaa 0f6c20b8 5966fca8 rosetta_4.07_windows_intelx86!cppdb::backend::statement::cache+0x0
0a1ec3b4 014c6625 000005e5 d7f9cfee 0f6c20b8 5966fc18 rosetta_4.07_windows_intelx86!cppdb::backend::statement::cache+0x0
0a1ec3f0 01641b35 5966fca8 d7f9c802 0a1ec490 ffffffff rosetta_4.07_windows_intelx86!cppdb::backend::statement::cache+0x0
0a1ec41c 0145e10b 0a1ec448 d7f9c86a 43c7aab0 0a97a470 rosetta_4.07_windows_intelx86!cppdb::atomic_counter::get+0x0
0a1ec474 018dba2c 0a97a470 d7f9c99a 0a1eeb5c 0a97a470 rosetta_4.07_windows_intelx86!cppdb::backend::statement::cache+0x0
0a1ec584 018fa95b 0a97a470 d7f9d4de 0a97a470 0a97a470 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ed8c0 01f72f5b 0a97a470 d7f9e25a 0a734cc0 4057f038 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1eee44 018a979a 0a97a470 d7f9e2f2 0a734cc0 3f976660 rosetta_4.07_windows_intelx86!xmlMutexLock+0x0
0a1eeeec 018a8ce7 0a97a470 3f976660 d7f9e3b6 0a620718 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1eefa8 0186af25 0a97a470 d7f9fd52 5b338a30 0a620718 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ef14c 018686df 0a1ef234 5b338a30 00000000 0a1ef1ec rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ef22c 018afa05 0a734cc0 0b082160 d7f9fe46 00002711 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ef258 018a3dcf 0a6b5218 0a96b9e0 d7f9fe86 0a40de70 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ef298 011494aa 0a6b5218 0a96b9e0 d7f9fb4a 03f114a4 rosetta_4.07_windows_intelx86!cppdb::backend::static_driver::in_use+0x0
0a1ef754 01152267 0000001e 0a220760 0a21a220 d7f9fb82 rosetta_4.07_windows_intelx86!xmlParserInputRead+0x0
0a1ef79c 773d8484 0023c000 773d8460 a36c896a 0a1ef7f8 rosetta_4.07_windows_intelx86!xmlParserInputRead+0x0
0a1ef7b0 775f2fea 0023c000 a341445c 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0
0a1ef7f8 775f2fba ffffffff 7760ec32 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0
0a1ef808 00000000 011522dd 0023c000 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0

*** Dump of thread ID 10800 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 0.000000, User Time: 0.000000, Wait Time: 79344368.000000

- Registers -
eax=00000000 ebx=0000000a ecx=00000000 edx=00000000 esi=00000000 edi=773d6490
eip=775fa54c esp=2f25fc90 ebp=2f25fcf4
cs=0023 ss=002b ds=002b es=002b fs=0053 gs=002b efl=00000216

- Callstack -
ChildEBP RetAddr Args to Child
2f25fcf4 7506340f 00000064 00000000 2f25ff30 0235d11b ntdll!NtDelayExecution+0x0
2f25fd04 0235d11b 00000064 0235d0f0 0235d0f0 00000000 KERNELBASE!Sleep+0x0
2f25ff30 773d8484 00000000 773d8460 8657819e 2f25ff8c rosetta_4.07_windows_intelx86!xmlMutexLock+0x0
2f25ff44 775f2fea 00000000 867a4c28 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0
2f25ff8c 775f2fba ffffffff 7760ec32 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0
2f25ff9c 00000000 0235d0f0 00000000 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0

*** Dump of thread ID 13688 (state: Waiting): ***

- Information -
Status: Wait Reason: ExecutionDelay, , Kernel Time: 156250.000000, User Time: 0.000000, Wait Time: 79344320.000000

- Registers -
eax=00000000 ebx=0ac45001 ecx=00000000 edx=00000000 esi=00000000 edi=000000ac
eip=775fa54c esp=160cfad4 ebp=160cfb38
cs=0023 ss=002b ds=002b es=002b fs=0053 gs=002b efl=00000206

- Callstack -
ChildEBP RetAddr Args to Child
160cfb38 7506340f 000007d0 00000000 160cfc30 01bd8d91 ntdll!NtDelayExecution+0x0
160cfb48 01bd8d91 000007d0 cbebf02e 0ac450c0 01bd8f70 KERNELBASE!Sleep+0x0
160cfc30 01bd8f77 00000000 0234a2f5 00000000 cbebf06a rosetta_4.07_windows_intelx86!xmlMutexLock+0x0
160cfc74 773d8484 0ac450c0 773d8460 bf7e8252 160cfcd0 rosetta_4.07_windows_intelx86!xmlMutexLock+0x0
160cfc88 775f2fea 0ac450c0 bf534f74 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0
160cfcd0 775f2fba ffffffff 7760ec32 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0
160cfce0 00000000 0234a29e 0ac450c0 00000000 00000000 ntdll!RtlValidSecurityDescriptor+0x0


*** Debug Message Dump ****


*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0

Exiting...

</stderr_txt>
]]>
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Message 6578 - Posted: 31 Jul 2018, 4:41:09 UTC
Last modified: 31 Jul 2018, 4:44:23 UTC

Getting a number of errors with this latest batch

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<message>
finish file present too long
</message>
<stderr_txt>
command: ../../projects/ralph.bakerlab.org/rosetta_4.07_i686-pc-linux-gnu -run:protocol jd2_scripting @flags_rb_07_27_541_784__t000__0_C3_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip input_rb_07_27_541_784__t000__0_C3_robetta.zip -nstruct 10000 -cpu_run_time 3600 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 1854370
Starting watchdog...
Watchdog active.
======================================================
DONE :: 1 starting structures 10962.7 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
BOINC :: WS_max 0

BOINC :: Watchdog shutting down...
13:02:13 (9306): called boinc_finish(0)

</stderr_txt>

See Task 4880552
Task 4880553
Task 4880524

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Message 6579 - Posted: 31 Jul 2018, 10:03:38 UTC

I have a different error: "202 (0x000000CA) EXIT_ABORTED_BY_PROJECT", after 3hs of run
4881359

And this after 50 minutes
4881450
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Message 6580 - Posted: 1 Aug 2018, 0:18:16 UTC

I had quite a few aborted by the Project, most had been running for around 3 hours then cancelled.

I have also gotten a validate error.

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Message 6581 - Posted: 1 Aug 2018, 5:30:58 UTC
Last modified: 1 Aug 2018, 5:32:21 UTC

Just had 40 work units all fail with "Process got Signal 11" error.

Example Task 4892528

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Message 6582 - Posted: 1 Aug 2018, 8:46:41 UTC - in response to Message 6580.  

I had quite a few aborted by the Project, most had been running for around 3 hours then cancelled.


Today situation seems to be better on my win10 box.
No error
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Message 6585 - Posted: 26 Sep 2018, 20:54:01 UTC

We report errors and bugs if you release wus!!
No new version of app, no wus for months....
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Message 6589 - Posted: 26 Nov 2018, 20:33:22 UTC - in response to Message 6585.  

We report errors and bugs if you release wus!!
No new version of app, no wus for months....


Still.... :-(
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Message 6590 - Posted: 14 Dec 2018, 16:57:46 UTC

Waiting for new app and new work....
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