Posts by Trotador

1) Message boards : RALPH@home bug list : Rosetta 4.12+ (Message 6781) Posted 1 May 2020 by Trotador Post: 4.20 still failing this way https://ralph.bakerlab.org/workunit.php?wuid=4518120 <core_client_version>7.14.2</core_client_version> <![CDATA[ <stderr_txt> command: ../../projects/ralph.bakerlab.org/rosetta_4.20_x86_64-pc-linux-gnu -run:protocol jd2_scripting -parser:protocol predictor_v11_boinc--fuse--il1r_design_boinc_v1_mod.xml @flags_il6r2 -in:file:silent Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.silent -in:file:silent_struct_type binary -silent_gz -mute all -out:file:silent_struct_type binary -out:file:silent default.out -in:file:boinc_wu_zip Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.zip @Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 5000 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3976176 Using database: database_357d5d93529_n_methyl/minirosetta_database ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 06:39:06 (90949): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>Mini_Protein_binds_IL6R_COVID-19_test3_SAVE_ALL_OUT_IGNORE_THE_REST_0cj9pv7f_32_771_1_r543859209_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
2) Message boards : RALPH@home bug list : Some tasks never finish (Message 6754) Posted 28 Apr 2020 by Trotador Post: I'm observing that some tasks reach to 98.1% completion and do not progress more, and are now over 9 hours processing time and continuing when I think the batch time to compeetion is around two hours. My hosts have ubuntu installed. Many threads but plenty of RAM for this batch. I'm seen it in two different hosts, all wus downloaded today, one of the host has not bee able to complete any task from the batch, I close boinc manager a restarted it and all wu started from zero. The other host has completed and is completing tasks in two hours time but also have a group of tasks over 9 nine hours now that do not go above 98.3% completion percentage. In a third host, tasks are now just around 98% completion, two hours processing time and my feeling is that will continue processing for hours. I've suspended all tasks but a few ones to see how they evolve. Anyone else?
3) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6745) Posted 28 Apr 2020 by Trotador Post: All units seem to be failing across all hosts Well, many of them, not all
4) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6744) Posted 28 Apr 2020 by Trotador Post: All units seem to be failing across all hosts
5) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6738) Posted 25 Apr 2020 by Trotador Post: I queued up more jobs. I'm not sure what is happening with the very short run failures. Still happening in the last batch https://ralph.bakerlab.org/workunit.php?wuid=4484345
6) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6731) Posted 23 Apr 2020 by Trotador Post: I've checked and It also occurs in hosts not connected to SSL, it claims that a file to upload is not available. I have several errors in a host because I ran out of the disk space so my fault. These units use a lot of space. Corrected
7) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6728) Posted 23 Apr 2020 by Trotador Post: Working OK for me. Changed several hosts and all of them have received units, also the ones not changed, Edit: also having the errors described in previous post. It does not seem to me to be related to SSL, but who knows.
8) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6538) Posted 18 Apr 2018 by Trotador Post: More errors <core_client_version>7.6.31</core_client_version> <![CDATA[ <message> process got signal 11 </message> <stderr_txt> command: ../../projects/ralph.bakerlab.org/rosetta_4.07_i686-pc-linux-gnu -run:protocol jd2_scripting @flags_rb_04_15_85_134__t000__0_C4_robetta -silent_gz -mute all -out:file:silent default.out -in:file:boinc_wu_zip input_rb_04_15_85_134__t000__0_C4_robetta.zip -nstruct 10000 -cpu_run_time 3600 -watchdog -boinc:max_nstruct 600 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2126819 Starting watchdog... Watchdog active. BOINC:: CPU time: 18506.1s, 14400s + 3600s[2018- 4-18 2:40:41:] :: BOINC WARNING! cannot get file size for default.out.gz: could not open file. Output exists: default.out.gz Size: -1 InternalDecoyCount: 0 (GZ) ----- 0 ----- Stream information inconsistent. Writing W_0000001 ====================================================== DONE :: 1 starting structures 18506.1 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== 02:40:41 (20103): called boinc_finish(0) </stderr_txt> ]]>
9) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6535) Posted 16 Apr 2018 by Trotador Post: Many units are taking over 1GB RAM (again), I've seen up to 1.6GB some examples: https://ralph.bakerlab.org/result.php?resultid=4610974 https://ralph.bakerlab.org/result.php?resultid=4611547 https://ralph.bakerlab.org/result.php?resultid=4610940 https://ralph.bakerlab.org/result.php?resultid=4611488 https://ralph.bakerlab.org/result.php?resultid=4613637 https://ralph.bakerlab.org/result.php?resultid=4613672 https://ralph.bakerlab.org/result.php?resultid=4613678 https://ralph.bakerlab.org/result.php?resultid=4613261 https://ralph.bakerlab.org/result.php?resultid=4616237 https://ralph.bakerlab.org/result.php?resultid=4615718 https://ralph.bakerlab.org/result.php?resultid=4614760 https://ralph.bakerlab.org/result.php?resultid=4614886 https://ralph.bakerlab.org/result.php?resultid=4614837 https://ralph.bakerlab.org/result.php?resultid=4616251 https://ralph.bakerlab.org/result.php?resultid=4616952 https://ralph.bakerlab.org/result.php?resultid=4614243 https://ralph.bakerlab.org/result.php?resultid=4614244
10) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6533) Posted 16 Apr 2018 by Trotador Post: Many units are taking over 1GB RAM (again), I've seen up to 1.6GB

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