31)
Message boards :
Number crunching :
Ralph and SSEx
(Message 7334)
Posted 4 Apr 2023 by  [VENETO] boboviz
Post:
LLVM16 is out
Visual Studio Code 1.77 with a lot of new feature (for example, support to Ruby)
|
32)
Message boards :
News :
Rosetta version 4.24 released for testing
(Message 7333)
Posted 4 Apr 2023 by [VENETO] boboviz
Post:
What about 4.25??
|
33)
Message boards :
RALPH@home bug list :
Rosetta 4.24
(Message 7332)
Posted 31 Mar 2023 by [VENETO] boboviz
Post:
Seems that problems are related to OS: Linux wus are validated correctly, but not Windows.
At the end, some wus validated correctly on my Windows pc!!
5425971
5425973
etc..
|
34)
Message boards :
RALPH@home bug list :
Rosetta 4.24
(Message 7330)
Posted 29 Mar 2023 by [VENETO] boboviz
Post:
Why does ralph try to extract database locally for every slot?
Rosetta extracted database to boinc.bakerlab.org_rosetta and all workunits use shared databse.
Uh, that's strange.
The environment of two project is identical
|
35)
Message boards :
RALPH@home bug list :
Rosetta 4.24
(Message 7329)
Posted 28 Mar 2023 by [VENETO] boboviz
Post:
Seems that problems are related to OS: Linux wus are validated correctly, but not Windows.
|
36)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7321)
Posted 26 Mar 2023 by [VENETO] boboviz
Post:
And, still, "test_GALingandDocking" wus validation error...
|
37)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7320)
Posted 26 Mar 2023 by [VENETO] boboviz
Post:
5419751
<message>
(unknown error) - exit code 3221225477 (0xc0000005)</message>
<stderr_txt>
07:55:33 (3956): Can't set up shared mem: -1. Will run in standalone mode.
command: projects/ralph.bakerlab.org/rosetta_4.23_windows_x86_64.exe @nmet_SR1_design7.2.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3753340
Extracting in slot directory: minirosetta_database.zip
Using database: database
Unhandled Exception Detected...
- Unhandled Exception Record -
Reason: Access Violation (0xc0000005) at address 0x000001C8A74BD830
Engaging BOINC Windows Runtime Debugger...
- Callstack -
ChildEBP RetAddr Args to Child
c8345bf0 c2d2438c 00000000 c4b12760 c4b12880 00000000 !+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'a74bd830'
c8345c20 c2d98d32 a67f69b0 c8345cc0 c2d667ac 00000000 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2d2438c'
c8345c50 c475fefe c521a8a0 c835f710 00000000 00000001 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2d98d32'
c8345c80 c2d69b38 c5930334 c1130000 c8345d70 56f00e7b rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c475fefe'
c8345cf0 56f7241f 00000000 c8346270 c8346930 00000000 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2d69b38'
c8345d20 56f214a4 00000000 c8346270 c8346930 00000000 ntdll!__chkstk+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '56f7241f'
c8346430 56f70f4e a6730000 56efb86b c4b37558 00000001 ntdll!RtlRaiseException+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '56f214a4'
c8346b40 c1760cb1 7efb99c5 a9762498 a9762f98 ffffffff ntdll!KiUserExceptionDispatcher+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '56f70f4e'
c8346b70 c2e25775 00000000 ab1139d0 c4b374a8 aac5bcf0 rosetta_4.23_windows_x86_64!cppdb::backend::driver::connect+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1760cb1'
c8346c90 c2fefc36 a9762498 c48a1430 00000003 a9762198 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2e25775'
c8347360 c2fe93db 00000020 a6730cc0 c83477f0 00000000 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fefc36'
c8347560 c2fe90f7 00000000 c8347670 c8347738 00000000 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fe93db'
c83476b0 c2fb1161 00000000 c83477c0 a6ddf710 00000001 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fe90f7'
c8347a70 c2fb89e2 00000000 00000000 00000000 a6ddf8c0 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fb1161'
c8348090 c2fb66c1 c83482e8 00000003 a6ddf710 00000003 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fb89e2'
c83481f0 c2ea616e a6deb870 c8348300 a6deb870 c8348498 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2fb66c1'
c8348340 c2ea9d96 5f626400 c1698da1 a6ddf710 a6ddf710 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2ea616e'
c83483b0 c2ea9d06 a6deb870 c8348498 00000000 a6deb870 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2ea9d96'
c8348450 c2e3005e 00000000 00000000 c4923ab8 c4923ab8 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2ea9d06'
c8348550 c2e2f796 00000000 c4923ab8 00000000 a9cf6330 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2e3005e'
c8348740 c19030d9 c83487e0 c83487e0 00000401 a9cf6330 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2e2f796'
c8348a30 c19066fb 00000000 c8348b40 00000401 ba2e8ba3 rosetta_4.23_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c19030d9'
c8348df0 c18fd7fc 00000050 00000000 ffffffff 00000008 rosetta_4.23_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c19066fb'
c8348e90 c1b7ba59 c8348f40 a6ddf710 c8348fa0 c8349670 rosetta_4.23_windows_x86_64!cppdb::session::is_open+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c18fd7fc'
c8349640 c1b7b4bb c8349750 c8349e20 aaea0320 c1910895 rosetta_4.23_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1b7ba59'
c8349690 c1b84fbf c8349750 aaea03f0 c83497a0 a6f68460 rosetta_4.23_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1b7b4bb'
c8349d40 c1b845c5 c8349e20 c1b64aa6 00000018 a7192da0 rosetta_4.23_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1b84fbf'
c8349de0 c1b84671 00000005 c834a440 a6f68460 00000001 rosetta_4.23_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1b845c5'
c8349f70 c16a04f4 c834a038 a7149aa0 a7149aa0 a6fb54e0 rosetta_4.23_windows_x86_64!cppdb::atomic_counter::atomic_counter+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c1b84671'
c835f700 c2d667ac 00000000 00000000 a67eab00 00000000 rosetta_4.23_windows_x86_64!cppdb::backend::driver::connect+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c16a04f4'
c835f740 54f37614 00000000 00000000 00000000 00000000 rosetta_4.23_windows_x86_64!cppdb::shared_object::safe_sym+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = 'c2d667ac'
c835f770 56f226a1 00000000 00000000 00000000 00000000 KERNEL32!BaseThreadInitThunk+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '54f37614'
c835f7f0 00000000 00000000 00000000 00000000 00000000 ntdll!RtlUserThreadStart+0x0 SymFromAddr(): GetLastError = '126' SymGetModuleInfo(): GetLastError = '126' Address = '56f226a1'
*** Dump of thread ID 32762 (state: Initialized): ***
- Information -
Status: Base Priority: Normal, Priority: Unknown, , Kernel Time: 6.000000, User Time: 0.000000, Wait Time: 2486621696.000000
- Registers -
rax=0000000000000000 rbx=0000000000000000 rcx=0000000000000000 rdx=0000000000000000 rsi=0000000000000000 rdi=0000000000000000
r8=0000000000000000 r9=0000000000000000 r10=0000000000000000 r11=0000000000000000 r12=0000000000000000 r13=0000000000000000
r14=0000000000000000 r15=0000000000000000 rip=0000000000000000 rsp=0000000000000000 rbp=0000000000000000
cs=0000 ss=0000 ds=0000 es=0000 fs=0000 gs=0000 efl=00000000
- Callstack -
ChildEBP RetAddr Args to Child
(-nosymbols- PC == 0)
00000000 00000000 00000000 00000000 00000000 00000000 !0+0x0
*** Debug Message Dump ****
*** Foreground Window Data ***
Window Name :
Window Class :
Window Process ID: 0
Window Thread ID : 0
Exiting...
</stderr_txt>
|
38)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7318)
Posted 23 Mar 2023 by [VENETO] boboviz
Post:
Some notes:
- nmet2_SR2_ has inconclusive validation (and, sometimes restarts after arrived at conclusion time)
- ralph_SR_hallucinated also inconclusive validation, similar to nmet2_SR2
- test_GALigandDocking_Ralph all errors at the end of calculation:
======================================================
DONE :: 1 starting structures 3665.38 cpu seconds
This process generated 1 decoys from 1 attempts
======================================================
BOINC :: WS_max 0
BOINC :: Watchdog shutting down...
08:52:48 (6620): called boinc_finish(0)
</stderr_txt>
<message>upload failure: <file_xfer_error>
<file_name>test_GALigandDocking_Ralph_2_16846_899_1_r1175532177_0</file_name>
<error_code>-240 (stat() failed)</error_code>
</file_xfer_error>
</message>
Seems there is a lot of work to do for this app....
|
39)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7316)
Posted 23 Mar 2023 by [VENETO] boboviz
Post:
the remaining 50 completed but apparently failed to validate.
Is like this failure to validate??
<stderr_txt>
06:31:51 (2224): Can't set up shared mem: -1. Will run in standalone mode.
command: projects/ralph.bakerlab.org/rosetta_4.23_windows_x86_64.exe @nmet_SR2_nmet_test.flags -nstruct 10000 -cpu_run_time 3600 -boinc:max_nstruct 20000 -checkpoint_interval 120 -mute all -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -boinc::cpu_run_timeout 36000 -run::rng mt19937 -constant_seed -jran 3754146
Extracting in slot directory: minirosetta_database.zip
Using database: database
======================================================
DONE :: 1 starting structures 3583.98 cpu seconds
This process generated 191 decoys from 191 attempts
======================================================
BOINC :: WS_max 0
BOINC :: Watchdog shutting down...
07:33:46 (2224): called boinc_finish(0)
</stderr_txt>
|
40)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7315)
Posted 23 Mar 2023 by [VENETO] boboviz
Post:
I've had received about 175 6.23 workunits and about 125 of these failed to complete (failed roughly a minute into computation) while the remaining 50 completed but apparently failed to validate.
You have to make public your pc to see error log...
|
41)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7314)
Posted 23 Mar 2023 by [VENETO] boboviz
Post:
My wus have this message at the end of computation (on Win11):
Task nmet_SR2_nmet_test_SAVE_ALL_OUT_16844_112_0 exited with zero status but no 'finished' file
If this happens repeatedly you may need to reset the project.
|
42)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7312)
Posted 21 Mar 2023 by [VENETO] boboviz
Post:
Where's the Wu's?
Maybe they are shy wus...
|
43)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7310)
Posted 16 Mar 2023 by [VENETO] boboviz
Post:
What's new with this version??
Uh, i had't seen the home page.
Great the introduction of new functionalities!!
P.S. We need more wus to test this app....
Still no wus....
|
44)
Message boards :
RALPH@home bug list :
Rosetta 4.23
(Message 7309)
Posted 14 Mar 2023 by [VENETO] boboviz
Post:
Please post issues with Rosetta 4.23 here.
What's new with this version??
P.S. We need more wus to test this app....
|
45)
Message boards :
RALPH@home bug list :
Rosetta 4.22
(Message 7303)
Posted 2 Mar 2023 by [VENETO] boboviz
Post:
I see that there is, after a long time, a new app for Windows 64 bit, the 4.22
What's new?
|
46)
Message boards :
Number crunching :
Ralph support OpenCL ?
(Message 7292)
Posted 29 Dec 2022 by [VENETO] boboviz
Post:
Today is not necessary to write code "directly" in OpenCl.
You can write c++ code and target OpenCl kernel and device.
An example: GPU performance portability using standard C++ with SYCL
|
47)
Message boards :
Number crunching :
Ralph support OpenCL ?
(Message 7288)
Posted 17 Dec 2022 by [VENETO] boboviz
Post:
The online OpenCL courses I've found so far all appear to either be long and expensive, or be basically addons for someone who is already using OpenCL.
Today is not necessary to write code "directly" in OpenCl.
You can write c++ code and target OpenCl kernel and device.
For example, you can use oneAPI (it's SYCL) to target Nvidia and AMD gpu.
|
48)
Message boards :
Number crunching :
Ralph support OpenCL ?
(Message 7269)
Posted 5 Nov 2022 by [VENETO] boboviz
Post:
OpenCL 3.0.12 released (with his SDK)
|
49)
Message boards :
Number crunching :
Ralph and SSEx
(Message 7246)
Posted 19 Aug 2022 by [VENETO] boboviz
Post:
GCC and LLVM will introduce x86 __bf16 (Brain Floating Point Format for deep learning / machine learning applications) in their next release.
|
50)
Message boards :
Number crunching :
Ralph support OpenCL ?
(Message 7230)
Posted 25 Jun 2022 by [VENETO] boboviz
Post:
Pocl 3.0 released with initial Opencl 3.0 support (and LLVM 14)
|
