Message boards : RALPH@home bug list : Bug Report for Ralph 5.26
Author | Message |
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Chu Volunteer moderator Project developer Project scientist Send message Joined: 26 Sep 06 Posts: 61 Credit: 12,545 RAC: 0 |
this is our first update since a long time. In this update, we include for the first time a protein-protein docking application, which is to predict the structure of a protein complex given the individual structures are known. |
Norman_RKN Send message Joined: 26 Mar 06 Posts: 5 Credit: 4,877 RAC: 0 |
i´ve no checkpointing with the new app! is it a bug or a feature ;) |
Inais Send message Joined: 30 Jul 06 Posts: 12 Credit: 13,115 RAC: 0 |
Is it normal, that the WU is now counting in single steps the separate models? Count up to nearly 100% for model 1, jump back to 10% and start with model 2 etc. Edit - how many models can be included in 1 WU? I wish I can fly like a bird in the sky |
Inais Send message Joined: 30 Jul 06 Posts: 12 Credit: 13,115 RAC: 0 |
1st WU is done - no error message at the BOINC manager. Looking into my reports: DOCK_1AVW_unbound_perturb_benchmark_1315_13 show up a "validate error" Biba - Inais. I wish I can fly like a bird in the sky |
[B^S] sTrey Send message Joined: 15 Feb 06 Posts: 58 Credit: 15,430 RAC: 0 |
1st WU is done - no error message at the BOINC manager. Every DOCK wu I've looked up has had nothing but validate errors. Does anyone know of one that's completed & validated successfully? |
Honza Send message Joined: 16 Feb 06 Posts: 9 Credit: 1,962 RAC: 0 |
Same error here; suspending. |
Inais Send message Joined: 30 Jul 06 Posts: 12 Credit: 13,115 RAC: 0 |
An other one with "validate error" DOCK_1ATN_unbound_perturb_benchmark_1315_10 Biba - Inais |
svenni96 Send message Joined: 16 Feb 06 Posts: 2 Credit: 2,326 RAC: 0 |
All my results get a validate error too. It looks that the validator does not know what to do with the new results. I could not believe that all results are invalid. I will also suspend ralph till there is an information from one of the programmers |
Femue Send message Joined: 25 Feb 06 Posts: 3 Credit: 3,397 RAC: 0 |
All my results get a validate error too. Howdie, i have a 24-hour-wu that already ran for ~4 hours. I suspended it, too - but what should i do? Will the validator be corrected or is it better to abort the wu? Femue |
Krzychu P. Send message Joined: 16 Feb 06 Posts: 19 Credit: 25,687 RAC: 0 |
First I had 3 WUs with 'Validate error' And now each one is with 'Client error' / 'Computing' In messages window I get: 2006-09-26 14:02:09|ralph@home|Unrecoverable error for result DOCK_1BVK_unbound_perturb_benchmark_1315_18_1 (Niepoprawna funkcja. (0x1) - exit code 1 (0x1)) 'Niepoprawna funkcja' = incorrect function |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
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Chu Volunteer moderator Project developer Project scientist Send message Joined: 26 Sep 06 Posts: 61 Credit: 12,545 RAC: 0 |
Thanks for all the feedbacks and reports. I started working on adding docking into Rosetta@home only from recently and am still learning how Rosetta@home and boinc work. I will consult with other experienced project developers in Baker Lab to invesgigate these errors and come back soon with answers. |
svenni96 Send message Joined: 16 Feb 06 Posts: 2 Credit: 2,326 RAC: 0 |
May be you could also think about if you will grant us credits for the validation error - wus? I know its still alpha, but i wasted round about 10 hours cputime today. :( |
Chu Volunteer moderator Project developer Project scientist Send message Joined: 26 Sep 06 Posts: 61 Credit: 12,545 RAC: 0 |
The validator has been updated to handle the docking output file with a slightly diifferent format and a couple of returning results have been validated with the new validator. Docking application is being checkpointed, but the percentage of completion shown on the graphic was updated incorrectly in docking. This will be fixed in the next updated version. Thanks for everyone's effort again. |
Femue Send message Joined: 25 Feb 06 Posts: 3 Credit: 3,397 RAC: 0 |
The validator has been updated to handle the docking output file with a slightly diifferent format and a couple of returning results have been validated with the new validator. No problem, I have it running again ;-) Femue |
anders n Send message Joined: 16 Feb 06 Posts: 166 Credit: 131,419 RAC: 0 |
Validate error Is there a way to run the faild ones thru the validator again?? Anders n |
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