Bug reports for 5.65

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k6

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Message 3139 - Posted: 23 May 2007, 13:16:52 UTC

Another WU that ends with compute error:

522587
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Profile anders n

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Message 3140 - Posted: 23 May 2007, 14:53:16 UTC
Last modified: 23 May 2007, 15:11:11 UTC

Intell MAC
Validate error
Silent_out::setup: silent output with symmetry info not compatible with non-ideal bonds yet.
https://ralph.bakerlab.org/result.php?resultid=523041
https://ralph.bakerlab.org/result.php?resultid=523042

Anders n

EDIT
And
https://ralph.bakerlab.org/result.php?resultid=523042
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Profile Bober [B@P]

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Message 3141 - Posted: 23 May 2007, 15:22:29 UTC
Last modified: 23 May 2007, 15:23:14 UTC

Computation error:
result 523948
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Odysseus

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Message 3142 - Posted: 23 May 2007, 20:34:32 UTC

Another crash on my G4/733; sorry, I can’t provide a link or exit-status code because the result seems to have been deleted from the servers already. BOINC Manager said:
[color=red]Wed May 23 13:30:29 2007|ralph@home|[error] rosetta_beta not responding to screensaver, requesting exit[/color]
Wed May 23 13:30:30 2007|ralph@home|Task 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0 exited with zero status but no 'finished' file
Wed May 23 13:30:30 2007|ralph@home|If this happens repeatedly you may need to reset the project.
Wed May 23 13:30:30 2007|ralph@home|Restarting task 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0 using rosetta_beta version 565
[…]
Wed May 23 13:41:30 2007|ralph@home|Deferring communication for 1 min 0 sec
Wed May 23 13:41:30 2007|ralph@home|Reason: Unrecoverable error for result 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0 (process got signal 6)
Wed May 23 13:41:30 2007|ralph@home|Computation for task 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0 finished
Wed May 23 13:41:30 2007|ralph@home|Output file 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0_0 for task 1bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7_0 absent

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Odysseus

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Message 3143 - Posted: 23 May 2007, 21:41:43 UTC - in response to Message 3142.  

I can’t provide a link or exit-status code because the result seems to have been deleted from the servers already.

Sorry, my mistake, looking in the wrong place. Here it is, exit status 6 (0x6): bq9A_BOINC_ABINITIO-1bq9A-frags83__2067_7.
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tallguy-13088
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Message 3144 - Posted: 23 May 2007, 21:49:47 UTC
Last modified: 23 May 2007, 21:52:15 UTC

Hi,

In the last twelve hours, I have aborted three (3) work units that have run over 10 hours apiece. They are as follows:

1fkb__BOINC_ABRELAX_BARCODE-1fkb_-frags83__2061_4
(2acy__BOINC_ABRELAX_BARCODE-2acy_-frags83__2061_4)
and
(1eyvA_BOINC_ABRELAX_BARCODE-1eyvA-frags83__2061_4)

The OS is Win2K
O/S: Win2K: 5.00.2195 SP4
BOINC Manager: 5.8.15
and all three workunits were running under RALPH 5.65.

If you need more debug info, pls contact. Thanks!

Had to re-edit since I messed up on the URL tags.
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Odysseus

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Message 3145 - Posted: 24 May 2007, 1:50:58 UTC
Last modified: 24 May 2007, 1:51:33 UTC

Some errors from my dual G5 Mac, all with exit code 193 (0xc1):
CNTRL_01ABRELAX_SAVE_ALL_OUT_-1pgx_-_filters_2065_23
CNTRL_01ABRELAX_SAVE_ALL_OUT_-1ogw_-_filters_2065_18
CNTRL_01ABRELAX_SAVE_ALL_OUT_-1cc8A-_filters_2065_17

I’m pretty sure these ones are not screensaver-related, as they occurred while the system had been undisturbed (with screen blacked out & monitor sleeping) for several hours.

Trying to get more work, amidst the “no work from project” messages I see:
Wed 23 May 19:35:45 2007|ralph@home|Sending scheduler request to https://ralph.bakerlab.org/ralph_cgi/cgi
Wed 23 May 19:35:45 2007|ralph@home|Reason: To fetch work
Wed 23 May 19:35:45 2007|ralph@home|Requesting 172800 seconds of new work
Wed 23 May 19:35:50 2007|ralph@home|Scheduler request succeeded
Wed 23 May 19:35:50 2007|ralph@home|Message from server: Project encountered internal error: shared memory
[color=red]Wed 23 May 19:35:50 2007|ralph@home|Project is down[/color]

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mdettweiler
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Message 3147 - Posted: 24 May 2007, 3:52:28 UTC - in response to Message 3145.  

Trying to get more work, amidst the “no work from project” messages I see:
Wed 23 May 19:35:45 2007|ralph@home|Sending scheduler request to https://ralph.bakerlab.org/ralph_cgi/cgi
Wed 23 May 19:35:45 2007|ralph@home|Reason: To fetch work
Wed 23 May 19:35:45 2007|ralph@home|Requesting 172800 seconds of new work
Wed 23 May 19:35:50 2007|ralph@home|Scheduler request succeeded
Wed 23 May 19:35:50 2007|ralph@home|Message from server: Project encountered internal error: shared memory
[color=red]Wed 23 May 19:35:50 2007|ralph@home|Project is down[/color]



I'm getting the same "shared memory" error. What could be causing this?
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Profile Conan
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Message 3149 - Posted: 24 May 2007, 9:59:41 UTC - in response to Message 3135.  

Work Units starting with TST1 are not Validating, after completing 6 hours of cruching they generate huge amouts of bug reports then say invalid and don't validate

https://ralph.bakerlabs.org/result.php?resultid=523246
https://ralph.bakerlabs.org/result.php?resultid=523511
https://ralph.bakerlabs.org/result.php?resultid=523862
https://ralph.bakerlabs.org/result.php?resultid=523863

Also https://ralph.bakerlabs.org/result.php?resultid=523529
gave the following

<core_client_version>5.8.16</core_client_version>
<![CDATA[
<message>
process exited with code 1 (0x1)
</message>
<stderr_txt>
Graphics are disabled due to configuration...
# cpu_run_time_pref: 21600
# random seed: 2663137
ERROR:: Unable to determine sequence length from pdb file
ERROR:: Exit from: pose.cc line: 1929

Hope this helps.


>> Another 3 Validate TST1 workunit errors
All have completed but failed to validate

https://ralph.bakerlabs.org/result.php?resultid=523534
https://ralph.bakerlabs.org/result.php?resultid=525016
https://ralph.bakerlabs.org/result.php?resultid=523245

Have a good day, it would be nice to get the cobblestones for these failed WUs.
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Gary Tegner

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Message 3150 - Posted: 24 May 2007, 10:27:38 UTC

invalid results (client error/compute error):
525985
523747
523123
523121
523015

valid results:
526004
525993

three other WUs are still running.
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tallguy-13088
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Message 3151 - Posted: 24 May 2007, 21:41:01 UTC
Last modified: 24 May 2007, 21:42:03 UTC

Please add

1vie__BOINC_ABRELAX_BARCODE-1vie_-frags83__2061_2

and

2acy__BOINC_ABRELAX_BARCODE-2acy_-frags83__2061_4

to the list of aborted workunits running over 10 hours or more
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Message 3152 - Posted: 24 May 2007, 22:08:30 UTC - in response to Message 3151.  

Please add […] to the list of aborted workunits running over 10 hours or more

Are we supposed to abort tasks that run for more than ten hours? I couldn’t find any announcement to that effect.
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Profile anders n

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Message 3156 - Posted: 25 May 2007, 4:32:43 UTC - in response to Message 3152.  

Please add […] to the list of aborted workunits running over 10 hours or more

Are we supposed to abort tasks that run for more than ten hours? I couldn’t find any announcement to that effect.


No we are not supposed to abort any tasks!

Unless there are a direct instruction to do so from the team.

Anders n
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