Message boards : RALPH@home bug list : Bug Reports for Rosetta Mini Versions 1.+
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Andrew Leaver-Fay Send message Joined: 14 Apr 06 Posts: 2 Credit: 5,272 RAC: 0 |
Thanks for posting that message, AdeB. Our rotamer library has been producing NaN errors lately. The zero in that list of three values (3 0 3) is clearly the source of the bug. Thanks! |
Thomas Leibold Send message Joined: 25 Feb 07 Posts: 27 Credit: 77,464 RAC: 0 |
Have there been enough workunits for Mini Rosetta 1.09 distributed ? I never got any of those. After the last Mini Rosetta 1.08 workunit there was about a day of the usual 'no work from project' for Ralph and I'm now getting Rosetta Beta 5.95 workunits (which makes sense since this too is a new client). Just wondering if Mini Rosetta 1.09 gets the testing it deserves. Edit: Looking again, it seems 1.09 was released after 5.95 so perhaps workunits are still coming. Now I wonder why I thought 1.09 had been out a day earlier ? |
tallguy-13088 Send message Joined: 17 Feb 06 Posts: 10 Credit: 121,701 RAC: 0 |
Hello, I just saw the announcement for MiniRosetta 1.09 and went to look for the Debug Symbols file and didn't see it. Are we "fixed" to the point where we don't need it anymore? |
dekim Volunteer moderator Project administrator Project developer Project scientist Send message Joined: 20 Jan 06 Posts: 250 Credit: 543,579 RAC: 0 |
I just added the 1.09 symbols file to the symstore and also to the download directory. The symbols file is 48MB! |
tallguy-13088 Send message Joined: 17 Feb 06 Posts: 10 Credit: 121,701 RAC: 0 |
Dekim, Got it! Thanks! |
caesar1987 Send message Joined: 10 Mar 08 Posts: 6 Credit: 190 RAC: 0 |
i cant stop rosetta mini. He ever calculate. When i give supsend project he calculate and calculate and calculate... he do the same when boinc autochange to other project... //edit and he stoped on cca 74% and write in second 100% |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
i cant stop rosetta mini. He ever calculate. When i give supsend project he calculate and calculate and calculate... Happens sometimes, mostly to apps run under a wrapper (although this is not Rosetta Mini's case). Best to leave such task running, it will mostly finish correctly, just as a side-effect, (nCPUs + 1) tasks will be running in parallel. Peter |
caesar1987 Send message Joined: 10 Mar 08 Posts: 6 Credit: 190 RAC: 0 |
he stoped but i thing, that this is not verry good bug.i cant stop rosetta mini. He ever calculate. When i give supsend project he calculate and calculate and calculate... |
Thomas Leibold Send message Joined: 25 Feb 07 Posts: 27 Credit: 77,464 RAC: 0 |
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Jipsu Send message Joined: 11 Mar 08 Posts: 26 Credit: 76,448 RAC: 0 |
One 1.09 WU failed <core_client_version>5.10.28</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> ERROR: Unique best command line context option match not found for -weights </stderr_txt> ]]> Using gentoo linux 2.6.24-gentoo-r3 https://ralph.bakerlab.org/result.php?resultid=834298 |
Michael Tyka Send message Joined: 12 Jan 08 Posts: 1 Credit: 1,443 RAC: 0 |
Sorry - this last error concenrning -weights was my fault. Unfortunately the mini application is in constant flux, and someone had changed the name for that option such that my old command line was suddenly outof date without me realising it. I removed the workunits replacing them with the correct command lline as soon as i realised. sorry fir this glitch, it's fixed now! Cheers, Mike |
Path7 Send message Joined: 11 Feb 08 Posts: 56 Credit: 4,974 RAC: 0 |
Hello to all readers, My last 1.09: WU score13_hb_envtest62_A_1scjB_3394_2757_0 https://ralph.bakerlab.org/result.php?resultid=837840 ran fine & validated ok, however the message rapport from Boinc showed this: 19-3-2008 0:14:28|ralph@home|Resuming task score13_hb_envtest62_A_1scjB_3394_2757_0 using minirosetta version 109 19-3-2008 0:19:43|ralph@home|[error] minirosetta not responding to screensaver, requesting exit 19-3-2008 0:19:44|ralph@home|Task score13_hb_envtest62_A_1scjB_3394_2757_0 exited with zero status but no 'finished' file 19-3-2008 0:19:44|ralph@home|If this happens repeatedly you may need to reset the project. 19-3-2008 0:19:44|ralph@home|Restarting task score13_hb_envtest62_A_1scjB_3394_2757_0 using minirosetta version 109 19-3-2008 0:20:13|ralph@home|Computation for task score13_hb_envtest62_A_1scjB_3394_2757_0 finished 19-3-2008 0:20:13|rosetta@home|Starting OL31__BOINC_SYMM_FOLD_AND_DOCK_RELAX-OL31_-foldanddock__2988_14505_0 Yes I did use the show graphic tab, and the text going with the graphics showed: not responding. The graphics seems to freeze for a second. I closed the graphics and the next moment the 1.09 was reported finished. Good luck crunching Ralph, Path7. |
KSMarksPsych Send message Joined: 16 Feb 06 Posts: 40 Credit: 8,226 RAC: 0 |
BOINC 5.10.21, Fedora 7, RosettaMini 1.09, Intel Core Duo I downloaded a bunch of Orbit work. It's currently running in EDF (high priority). I noticed that the CPU time wasn't ticking up once per second as I would have expected. A quick look at top shows that RosettaMini was getting a third of the processing power. Starting and stopping the daemon got the Rosetta app back under control. Screenshot for your viewing pleasured... Kathryn :o) The BOINC FAQ Service The Unofficial BOINC Wiki The Trac System More BOINC information than you can shake a stick of RAM at. |
JChojnacki Send message Joined: 16 Feb 06 Posts: 2 Credit: 24,627 RAC: 0 |
miniRosetta 1.10 Failure: https://ralph.bakerlab.org/result.php?resultid=865199 stderr out <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> ERROR: Unique best command line context option match not found for -weights </stderr_txt> ]]> ~Joel |
Rolly Send message Joined: 7 May 06 Posts: 2 Credit: 24,104 RAC: 0 |
Following Dr. Bakers request I have connected to Ralph again. At this moment it seems that I won't be of any help as I am running Eset nod32 as a virus scanner. Every new version of rosettamini gives new false positives on the Win32/Statik virus. I have also noticed Eset on this and I hope you two can work this out. Good luck and I am looking forward to CASP J |
Jipsu Send message Joined: 11 Mar 08 Posts: 26 Credit: 76,448 RAC: 0 |
<core_client_version>5.10.28</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. unzip: cannot find zipfile directory in one of minirosetta_database_rev20940.zip or minirosetta_database_rev20940.zip.zip, and cannot find minirosetta_database_rev20940.zip.ZIP, period. ERROR: Unable to open file: minirosetta_database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 85 called boinc_finish </stderr_txt> ]]> I'm getting this for every Rosetta mini 1.10 WU on my Linux 2.6.24-gentoo-r4 |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Had 20 work units fail with same error <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> End-of-central-directory signature not found. Either this file is not a zipfile, or it constitutes one disk of a multi-part archive. In the latter case the central directory and zipfile comment will be found on the last disk(s) of this archive. unzip: cannot find zipfile directory in one of minirosetta_database_rev20940.zip or minirosetta_database_rev20940.zip.zip, and cannot find minirosetta_database_rev20940.zip.ZIP, period. ERROR: Unable to open file: minirosetta_database/chemical/residue_type_sets/fa_standard/residue_types.txt ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 85 called boinc_finish First WU to fail Last WU of 20 to fail All failed on Host 13121, AMD Opteron 285, Linux Fedora Core 3. |
KSMarksPsych Send message Joined: 16 Feb 06 Posts: 40 Credit: 8,226 RAC: 0 |
Had 20 work units fail with same error Same here. Host ID 11671, Intel Core Duo, Fedora 7, BOINC 5.10.21 Kathryn :o) The BOINC FAQ Service The Unofficial BOINC Wiki The Trac System More BOINC information than you can shake a stick of RAM at. |
Path7 Send message Joined: 11 Feb 08 Posts: 56 Credit: 4,974 RAC: 0 |
Hello, thanks for warning, Also having the process exited with code 1 (0x1, -255). Computer ID 13238, AMD Sempron 3000+, Ubuntu 7.10, Boinc 5.10.45. I've reset the project after 2 failed WU's, with no result at all. After 4 failed WU's I've decided to temporally stop downloading new Ralph work. Edit: I've rebooted my dual-boot machine and now running Windows XP-home, Boinc 5.10.45, (still Sempron 3000+). The Rosetta Mini 1.10 has already crunched 10 minutes, much longer than on Linux. I guess the lately reported errors are a Linux application issue. Path7. |
Jipsu Send message Joined: 11 Mar 08 Posts: 26 Credit: 76,448 RAC: 0 |
My windows machines are crunching just fine so it must be some error in linux application |
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Bug Reports for Rosetta Mini Versions 1.+
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