Message boards : RALPH@home bug list : Bug reports for 5.96
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m.mitch Send message Joined: 12 May 06 Posts: 16 Credit: 159,478 RAC: 357 |
The last couple of work units stalled at 21 seconds. BOINC Manger reported them running but there were no changes to completion times or percentage done. [urlhttps://ralph.bakerlab.org/workunit.php?wuid=902848]Here's a link[/URL]. The box is running Kubuntu 8.04 on a P4. Click here to join the #1 Aussie Alliance on RALPH |
nouqraz Send message Joined: 22 May 08 Posts: 7 Credit: 13,627 RAC: 0 |
Had 1 5.96 task fail: https://ralph.bakerlab.org/result.php?resultid=982220 <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1326558 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x0093E2D2 write attempt to address 0x0DC57000 Engaging BOINC Windows Runtime Debugger... ... theres alot more of the error message All of the other 5.96 tasks assigned to that host seem to have completed or are running just fine so far. |
Jipsu Send message Joined: 11 Mar 08 Posts: 26 Credit: 76,448 RAC: 0 |
https://ralph.bakerlab.org/result.php?resultid=983408 failed. <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> - exit code -1073741819 (0xc0000005) </message> <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1326360 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00BF0601 read attempt to address 0x0E109000 Engaging BOINC Windows Runtime Debugger... |
Hans Sveen Send message Joined: 17 Feb 06 Posts: 11 Credit: 386,241 RAC: 51 |
Hello! Just wanted to report some odd behavior on this work unit WU It does not show any thing in the "Searching", "Accepted" or "Low Energy" frames when using the "Show graphics" button. Snapshot to graphics: http://hans.snodig.net/bilder/Ralph1.gif One taken some time later: http://hans.snodig.net/bilder/Ralph2.gif Sorry for the big pictures, hope shows ok. It seem to be running well. Hope this may help in debbugging vers.5.96 if needed! Host Id running boinc 5.10.45. Some editing, fixing links! Update: Another from the same series twist ring twist angel WU don't show this behaviour , the former wu has some kind of internal error, we'll see if it finishes! With regards, Hans Sveen Oslo, Norway |
David Emigh Send message Joined: 6 Jan 08 Posts: 27 Credit: 26,482 RAC: 0 |
Compute error at 13 seconds: file_xfer_error ERROR:: Unable to determine sequence length from pdb file BAK1lcj_loop_model_biased_clusterCC00_4096_6_0 RALPH and Rosie sittin' in a tree, F - O - L - D - I - N - G! |
Odysseus Send message Joined: 4 May 07 Posts: 23 Credit: 16,331 RAC: 0 |
I happened to open Activity Monitor on my dual-G5 Mac (OS v10.4.11) while a task was preëmpted, and it shows rosetta_beta_5.96_powerpc-apple-darwin using slightly over 1% of a CPU—although BOINC Manager (v5.10.45) displays its status as “Waiting to run” (about half done), and other apps, specifically einstein_S5R3 at the moment, show zero CPU usage under the same circumstances. Some kind of ‘thread leak’? FWIW the apps that are running now (at 90+% CPU each) are setiathome-enhanced and astropulse (SETI@home Beta). |
Path7 Send message Joined: 11 Feb 08 Posts: 56 Credit: 4,974 RAC: 0 |
Hello all, This task: resultid=1022982 had a error after 18 seconds: Process exited with code 1 (0x1, -255), ERROR:: Exit from: input_pdb.cc line: 3030 OS: Ubuntu 7.10 x86, Boinc 5.10.45. Edit: Saw I had the second run, the first run had the same error on W-XP. Have a nice day, Path7. |
[AF>Le_Pommier] ninicool Send message Joined: 28 Feb 06 Posts: 4 Credit: 4,699 RAC: 0 |
Hello, This task resultid=1023265 had an error after half an hour. <message> process exited with code 193 (0xc1, -63) </message> ... Crashed executable name: rosetta_beta_5.96_powerpc-apple-darwin ... Sorry for this bad news. Nicole |
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0 |
Yes likewise, this one failed after 7 minutes: 1023411 The error message reads: <core_client_version>5.10.20</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1192676 ERROR:: Exit from: .refold.cc line: 338 |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Had this Validate Error on what appears to be an OK Work Unit. Also it had a very good number of Decoys generated. stderr out <core_client_version>5.10.21</core_client_version> <![CDATA[ <stderr_txt> Graphics are disabled due to configuration... # cpu_run_time_pref: 21600 # random seed: 1191993 ====================================================== DONE :: 1 starting structures 21593.7 cpu seconds This process generated 1562 decoys from 1562 attempts 0 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... called boinc_finish </stderr_txt> ]]> Validate state Invalid |
nouqraz Send message Joined: 22 May 08 Posts: 7 Credit: 13,627 RAC: 0 |
https://ralph.bakerlab.org/result.php?resultid=1023179 https://ralph.bakerlab.org/result.php?resultid=1023178 https://ralph.bakerlab.org/result.php?resultid=1023142 https://ralph.bakerlab.org/result.php?resultid=1023124 The above tasks all failed after around 30 - 45 seconds with the following: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 3600 # random seed: 1192707 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> https://ralph.bakerlab.org/result.php?resultid=1023221 https://ralph.bakerlab.org/result.php?resultid=1023214 The above two both failed after about 10 seconds. <core_client_version>5.10.45</core_client_version> <![CDATA[ <stderr_txt> # cpu_run_time_pref: 3600 ERROR:: Unable to determine sequence length from pdb file ====================================================== DONE :: 1 starting structures 10 cpu seconds This process generated 0 decoys from 0 attempts 1 starting pdbs were skipped ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down... </stderr_txt> <message> <file_xfer_error> <file_name>BAK1lcj_loop_model_biased_clusterCC02_4096_9_1_0</file_name> <error_code>-161</error_code> </file_xfer_error> </message> ]]> |
Dr Who Fan Send message Joined: 2 Sep 06 Posts: 76 Credit: 107,857 RAC: 0 |
This one failed after 76.64063 seconds: Task ID 1035762 Name FRA_t423_CASP8_1G3U_11_IGNORE_THE_RESTaggt423_11_t423__t423_7_aa1G3U_7.fasta.template_0003_4216_1_0 Workunit 916914 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 7200 # random seed: 1183334 ERROR:: Exit from: .loop_relax.cc line: 1745 </stderr_txt> ]]> |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
t405__CASP8_JUMPAB_TYPE2_RES81to192_SAVE_ALL_OUT_BARCODE__4233_54_0: <core_client_version>6.2.4</core_client_version> Peter |
Dayne Send message Joined: 27 Apr 08 Posts: 2 Credit: 48,831 RAC: 0 |
All my t419N_autoalign_ WUs are failing with this message: <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> process exited with code 1 (0x1, -255) </message> <stderr_txt> Rosetta@home Macintosh Stack Size checker. Original size: 8388608. Maximum size: 0. RLIM_INFINITY 67104768 # cpu_run_time_pref: 3600 ERROR:: Unable to determine sequence length from pdb file # random seed: 1178733 ERROR:: Exit from: refold.cc line: 338 </stderr_txt> ]]> |
Dayne Send message Joined: 27 Apr 08 Posts: 2 Credit: 48,831 RAC: 0 |
new errors from t419N_autoalign_ WUs. |
Jipsu Send message Joined: 11 Mar 08 Posts: 26 Credit: 76,448 RAC: 0 |
Just pick an error you like most https://ralph.bakerlab.org/results.php?hostid=12816 Only two choices though. <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 3600 ERROR:: Unable to determine sequence length from pdb file # random seed: 1178530 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> or <core_client_version>5.10.45</core_client_version> <![CDATA[ <message> Maximum disk usage exceeded </message> ]]> |
EvoDude Send message Joined: 18 Feb 06 Posts: 28 Credit: 639,833 RAC: 0 |
Same here. All my 't419N' WU's are failing. |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
Same here. All my 't419N' WU's are failing. The same here today. Lot of "Report to Microsoft" confirmation windows. With plenty of apparently unrelated reasons: "Maximum disk usage exceeded + ERROR:: Unable to determine sequence length from pdb file", "Unhandled Exception Record, Reason: Breakpoint Encountered (0x80000003) at address 0x7C90120E", "Incorrect function. (0x1) - exit code 1 (0x1) + ERROR:: Exit from: .refold.cc line: 338", "Maximum disk usage exceeded + ERROR:: Exit from: .refold.cc line: 338", etc. Few debugging outputs. Once I've noticed in the logs "Aborting task t419N_autoalign_IGNORE_THE_REST_renumbered_4290_6_0: exceeded disk limit: 531.22MB > 476.84MB" - the disk space isue seems to be my fault, the free disk space went down to approx. my BOINC "leave xxxx free" preference. But still the "Report to Microsoft" dialogs should not appear. Peter |
Dr Who Fan Send message Joined: 2 Sep 06 Posts: 76 Credit: 107,857 RAC: 0 |
Reporting 4 workunits all with the same error: ERROR:: Unable to determine sequence length from pdb file Task ID 1041144 Name t419N_autoalign_IGNORE_THE_REST_renumbered_4373_4_0 Workunit 921753 CPU time 3106.453 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 7200 ERROR:: Unable to determine sequence length from pdb file # random seed: 1178115 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> Validate state Invalid Claimed credit 8.34820561908388 Granted credit 0 application version 5.96 --------------- Task ID 1041154 Name t419N_autoalign_IGNORE_THE_REST_renumbered_4283_5_0 Workunit 921763 CPU time 433.9688 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 7200 ERROR:: Unable to determine sequence length from pdb file # random seed: 1179014 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> Validate state Invalid Claimed credit 1.16623711180149 Granted credit 0 application version 5.96 --------------- Task ID 1041155 Name t419N_autoalign_IGNORE_THE_REST_renumbered_4284_5_0 Workunit 921764 CPU time 6452.938 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 7200 ERROR:: Unable to determine sequence length from pdb file # random seed: 1179004 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> Validate state Invalid Claimed credit 17.3414673491599 Granted credit 0 application version 5.96 --------------- Task ID 1041643 Name t419N_autoalign_IGNORE_THE_REST_renumbered_4372_9_0 Workunit 922252 CPU time 2584.141 stderr out <core_client_version>6.1.0</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> # cpu_run_time_pref: 7200 ERROR:: Unable to determine sequence length from pdb file # random seed: 1178120 ERROR:: Exit from: .refold.cc line: 338 </stderr_txt> ]]> Validate state Invalid Claimed credit 7.19297851625512 Granted credit 0 application version 5.96 |
Pepo Send message Joined: 8 Sep 06 Posts: 104 Credit: 36,890 RAC: 0 |
... "Maximum disk usage exceeded + ERROR:: Exit from: .refold.cc line: 338", etc. Few debugging outputs. No wonder, when two Rosetta Beta 5.96 slots dirs' stdout.txt files, sized 1 GB, contain no idea how many hundred thousands trailing lines in form of WARNING: refold called with uninit torsions And the slots are not being cleaned upon aborting and reporting the task (Win Boinc 6.2.4). Peter |
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