This app version is identical to v1.44 but includes the latest minirosetta database. Please post any issues or bugs here.

---

Hello all,

This WU, task ID 1206185:
cc_1_3_nocst4_homo_bench_foldcst_chunk_general_t331__olange_IGNORE_THE_REST_1G76A_3_5889_3_0
ended with a validate error.
Windows XP-home SP3, Boinc 5.10.45

Path7.

this was a cancelled task. there will be a lot of them but you should be getting credit for them now.

---

Dekim If we copy & paste latest database rev 26003 from the ralph project folder to the main rosetta folder will that save us having to download the same database twice for people who contribute to both rosetta projects? Why do you need to push out a new database, dose it have some new features for some new models that are coming up? Thanks

I think that should work but am not completely sure. They are identical versions of the database (on ralph and r@h).

We needed to push out a new version because there were some modifications necessary for some new jobs.

---

this was a cancelled task. there will be a lot of them but you should be getting credit for them now.

Thanks dekim,
for your reaction. I didn't realize this one could be canceled, I see credit now.

The next WU ran for 0.00 seconds. I suppose it was a real error (client error):
1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0
<core_client_version>5.10.45</core_client_version>
<![CDATA[
<message>
Onjuiste functie. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>
ERROR: Illegal value specified for option -run:rng : m
</stderr_txt>
]]>
(Onjuiste functie = incorrect function)

Message from Boinc:
5-12-2008 22:18:17|ralph@home|Computation for task 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0 finished
5-12-2008 22:18:17|ralph@home|Output file 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0_0 for task 1co4A_ZNMP_ABRELAX_tetraR_IGNORE_THE_REST_ZINC_METALLOPROTEIN-1co4A-_6078_6_0 absent

Hope this will be helpful,
Path7.

I think that should work but am not completely sure. They are identical versions of the database (on ralph and r@h).

We needed to push out a new version because there were some modifications necessary for some new jobs.

Thanks for explaining. I'll use my quad 2.66 to help drian the ralph readyto send work. 48 tasks to go

That one was an error on our part. The command line was truncated because it exceeded the maximum string length that the boinc server handles. We should have caught that upon the job submission attempt but there was a bug in our submit script. It has since been fixed. Just ignore these errors.

---

this WU finish and crash:

06/12/2008 03:00:04|ralph@home|Computation for task ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t293__mtyka_IGNORE_THE_REST_1VQ1A_10_5940_2_1 finished
06/12/2008 03:00:04|ralph@home|Output file ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t293__mtyka_IGNORE_THE_REST_1VQ1A_10_5940_2_1_0 for task ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t293__mtyka_IGNORE_THE_REST_1VQ1A_10_5940_2_1 absent

this is runed 2h 30m apox.

Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out:

Task ID 1219133
(the first cruncher got a compute error)

Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1
Workunit 1075263

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

CPU time 3287.45

stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0
======================================================
DONE :: 1 starting structures 3286.76 cpu seconds
This process generated 4 decoys from 4 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 20.9957354429277
Granted credit 0
application version 1.45

-------------------

Task ID 1219112
(the first cruncher also got a compute error)

Task ID 1219112
Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1
Workunit 1074442

Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)

CPU time 1727.848
stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
SIGBUS: bus error

Crashed executable name: minirosetta_1.45_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.5 build 9F33
Sat Dec 6 21:18:39 2008

sh: /usr/bin/atos: No such file or directory
0 0x0064c07b SIGPIPE: write on a pipe with no reader
1 0x0051feba SIGPIPE: write on a pipe with no reader
2 0x9393009b SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0001596f SIGPIPE: write on a pipe with no reader
5 0x000830f3 SIGPIPE: write on a pipe with no reader
6 0x000fa4e2 SIGPIPE: write on a pipe with no reader
7 0x001938b1 SIGPIPE: write on a pipe with no reader
8 0x001afe27 SIGPIPE: write on a pipe with no reader
9 0x001b5381 SIGPIPE: write on a pipe with no reader
10 0x00009a87 SIGPIPE: write on a pipe with no reader
11 0x0000292e SIGPIPE: write on a pipe with no reader
12 0x00002855
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c
ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

Binary Images Description:
0x1000 - 0x12b2fff /Library/Application Support/BOINC Data/slots/0/../../projects/ralph.bakerlab.org/minirosetta_1.45_i686-apple-darwin
0x3e000000 - 0x3e045fff /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT
0x900c1000 - 0x9028ffff /System/Library/Frameworks/Security.framework/Versions/A/Security
0x90290000 - 0x90342fff /usr/lib/libcrypto.0.9.7.dylib
0x90343000 - 0x90347fff /usr/lib/system/libmathCommon.A.dylib
0x90348000 - 0x9037ffff /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x90380000 - 0x90413fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x90414000 - 0x90453fff /System/Library/PrivateFrameworks/CoreMediaIOServicesPrivate.framework/Versions/A/CoreMediaIOServicesPrivate
0x90454000 - 0x904dbfff /usr/lib/libsqlite3.0.dylib
0x904dc000 - 0x90539fff /usr/lib/libstdc++.6.dylib
0x9056d000 - 0x90579fff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x9057a000 - 0x9065ffff /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x90660000 - 0x90667fff /usr/lib/libgcc_s.1.dylib
0x90668000 - 0x90686fff /usr/lib/libresolv.9.dylib
0x906d7000 - 0x90791fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x90792000 - 0x907a2fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x907a3000 - 0x90a1efff /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x90a1f000 - 0x90a5dfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x90a6b000 - 0x90a73fff /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x90bf4000 - 0x913f1fff /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x913f2000 - 0x91434fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x91435000 - 0x91459fff /usr/lib/libxslt.1.dylib
0x9145a000 - 0x91460fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x91461000 - 0x9152cfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x91622000 - 0x9162bfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x9162c000 - 0x91764fff /usr/lib/libicucore.A.dylib
0x92983000 - 0x929fffff /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x92a00000 - 0x92dbefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x92dfa000 - 0x92e10fff /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x92e14000 - 0x92e21fff /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x92ebe000 - 0x92ebefff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x92ebf000 - 0x92f3efff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x92f3f000 - 0x93020fff /usr/lib/libxml2.2.dylib
0x93280000 - 0x9330bfff /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x9330c000 - 0x9330cfff /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x9330d000 - 0x93335fff /usr/lib/libcups.2.dylib
0x93336000 - 0x93339fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x9333a000 - 0x93344fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x934d9000 - 0x934dbfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x934dc000 - 0x93536fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x935f9000 - 0x93600fff /usr/lib/libbsm.dylib
0x93601000 - 0x93603fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x9363a000 - 0x936e8fff /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
0x936e9000 - 0x9376dfff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x9376e000 - 0x937fafff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x937fb000 - 0x9384bfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x9384c000 - 0x93864fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x93865000 - 0x938c1fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRendering.framework/Versions/A/HTMLRendering
0x938c2000 - 0x93a22fff /usr/lib/libSystem.B.dylib
0x93a23000 - 0x93aa0fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x93aa1000 - 0x93eb1fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x93eef000 - 0x93f69fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x93f6a000 - 0x93f89fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x94280000 - 0x942affff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x942b0000 - 0x942f9fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x943e0000 - 0x94702fff /System/Library/Frameworks/QuickTime.framework/Versions/A/QuickTime
0x94703000 - 0x94703fff /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x947b0000 - 0x947b0fff /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x9487b000 - 0x94d4cfff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x94d53000 - 0x953effff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x953f0000 - 0x9541afff /System/Library/PrivateFrameworks/CoreMediaPrivate.framework/Versions/A/CoreMediaPrivate
0x9548e000 - 0x95518fff /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x95519000 - 0x95527fff /usr/lib/libz.1.dylib
0x95528000 - 0x95528fff /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
0x95541000 - 0x95551fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x95552000 - 0x95556fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x9556f000 - 0x9556ffff /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x9557c000 - 0x955b6fff /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x955b7000 - 0x958befff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x958cf000 - 0x958e5fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x958e6000 - 0x958e7fff /usr/lib/libffi.dylib
0x958e8000 - 0x9598ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x959e0000 - 0x95a0dfff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x95b18000 - 0x95bc8fff /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x96227000 - 0x96252fff /usr/lib/libauto.dylib
0x962a3000 - 0x963d5fff /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x96449000 - 0x9658ffff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x96590000 - 0x96590fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x96591000 - 0x96671fff /usr/lib/libobjc.A.dylib
0x96673000 - 0x96706fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x9673e000 - 0x9677dfff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x9677e000 - 0x9677efff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x9677f000 - 0x9677ffff /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x96780000 - 0x96847fff /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x96848000 - 0x96be5fff /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x96be6000 - 0x96c3ffff /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x96c43000 - 0x96c57fff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x96c6c000 - 0x96c87fff /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x96c88000 - 0x96c8dfff /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x96c8e000 - 0x96f68fff /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x96f69000 - 0x9708dfff /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox


Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 11.0351304182852
Granted credit 0
application version 1.45

Suddenly received a lot of wus as second cruncher. Most of them succeeded, but these two errored out:

Task ID 1219133
(the first cruncher got a compute error)

Name ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1
Workunit 1075263

Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x0)

CPU time 3287.45

stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<stderr_txt>
WARNING! cannot write gzipped stream to file ../../projects/ralph.bakerlab.org/ccc_1_8_native_fa_cst_homo_bench_foldcst_chunk_general_t373__mtyka_IGNORE_THE_REST_1LNWA_10_6114_1_1_0
======================================================
DONE :: 1 starting structures 3286.76 cpu seconds
This process generated 4 decoys from 4 attempts
======================================================

BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down...
called boinc_finish

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 20.9957354429277
Granted credit 0
application version 1.45

-------------------

Task ID 1219112
(the first cruncher also got a compute error)

Task ID 1219112
Name ccc_1_8_mammoth_cst_homo_bench_foldcst_chunk_general_t317__mtyka_IGNORE_THE_REST_2ESBA_11_5963_2_1
Workunit 1074442

Server state Over
Outcome Client error
Client state Compute error
Exit status 193 (0xc1)

CPU time 1727.848
stderr out

<core_client_version>6.2.18</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
SIGBUS: bus error

Crashed executable name: minirosetta_1.45_i686-apple-darwin
built using BOINC library version 6.5.0
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.5.5 build 9F33
Sat Dec 6 21:18:39 2008

sh: /usr/bin/atos: No such file or directory
0 0x0064c07b SIGPIPE: write on a pipe with no reader
1 0x0051feba SIGPIPE: write on a pipe with no reader
2 0x9393009b SIGPIPE: write on a pipe with no reader
3 0xffffffff SIGPIPE: write on a pipe with no reader
4 0x0001596f SIGPIPE: write on a pipe with no reader
5 0x000830f3 SIGPIPE: write on a pipe with no reader
6 0x000fa4e2 SIGPIPE: write on a pipe with no reader
7 0x001938b1 SIGPIPE: write on a pipe with no reader
8 0x001afe27 SIGPIPE: write on a pipe with no reader
9 0x001b5381 SIGPIPE: write on a pipe with no reader
10 0x00009a87 SIGPIPE: write on a pipe with no reader
11 0x0000292e SIGPIPE: write on a pipe with no reader
12 0x00002855
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x938f7e62 ecx: 0xbfffaa5c edx: 0x938c34a6
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffaa98 esp: 0xbfffaa5c
ss: 0x0000001f efl: 0x00000206 eip: 0x938c34a6 cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037

Binary Images Description:
[[etc etc]]


Exiting...

</stderr_txt>
]]>

Validate state Invalid
Claimed credit 11.0351304182852
Granted credit 0
application version 1.45

Sorry for the double posting. I was too careless with the preview function...

I have 50 workunits to crunch (deadline: 8/9 Dec 2008). I will finish them within deadline, but will I get credits, too? They all end with "validate error".

Everything is all right! I've got Credits for the "Validate Error"-Workunits. I just need a little bit more patience. ;-)

1 failure tonight on Work Unit 1073746

Others this week are:-

1074111
1075181
1076036

---