minirosetta 1.58

Author	Message
Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0	Message 4724 - Posted: 6 Mar 2009, 9:33:09 UTC validate error: all first time runs 1329199 1329195 1329205 1329212 1329219 1329224 What causes a validation error? It would appear that my 6 errant work units are well on the way to have successful second runs. ID: 4724 · Reply Quote

Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0	Message 4725 - Posted: 9 Mar 2009, 23:42:46 UTC There are going to be quite few errors coming through until the system sorts itself out after the closure. I have had a good number of ghost work units reportedly downloaded to me but I can't find them. They have been already been reported as successes and rewarded points but handed out again. ID: 4725 · Reply Quote

Speedy Send message Joined: 4 Dec 06 Posts: 8 Credit: 1,985 RAC: 0	Message 4726 - Posted: 10 Mar 2009, 7:57:10 UTC Last modified: 10 Mar 2009, 8:04:33 UTC This Workunit Displayed a black window when I pushed the show graphics button under the tasks tab in Boinc manger. It completed successfully after about 55 minutes I got credit for it. Could the reason be because the task may have been a resend? Is their a eta as to when 1.58 was be deployed on the main Rosetta? ID: 4726 · Reply Quote

feet1st Send message Joined: 7 Mar 06 Posts: 313 Credit: 116,623 RAC: 0	Message 4727 - Posted: 13 Mar 2009, 19:00:36 UTC Last modified: 13 Mar 2009, 19:01:33 UTC A few tasks lately have produced large outfiles, and ended prematurely (as compared to my 24hr runtime preference). Presumably due to the 99 model limit. But I thought you would want to be aware of them. runtime !result size !task 11:41 !1.6MB !1343012 10hrs !unknown !1339103 21:41 !2.56MB !1343325 These are all the loopbuild tasks of various flavors. ID: 4727 · Reply Quote

Pentti Kiesi Send message Joined: 2 Jan 09 Posts: 2 Credit: 111,437 RAC: 0	Message 4728 - Posted: 15 Mar 2009, 7:49:43 UTC One WU seems not willing to upload at all. Others before and after it are uploading correctly: 13.3.2009 21:38:39\|ralph@home\|Started upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0 13.3.2009 21:38:39\|ralph@home\|Started upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1f5s_99_8360_1_0_0 13.3.2009 21:38:39\|Poem@Home\|Restarting task Peptide_387_1236485967_1676836187_0 using poem version 100 13.3.2009 21:38:39\|malariacontrol.net\|Restarting task wu_510_511_2640_0_1236930257_1 using malariacontrolBeta version 612 13.3.2009 21:38:39\|malariacontrol.net\|Restarting task wu_510_415_2640_0_1236930257_0 using malariacontrolBeta version 612 13.3.2009 21:38:39\|malariacontrol.net\|Restarting task wu_510_414_2640_0_1236930257_1 using malariacontrolBeta version 612 13.3.2009 21:38:40\|ralph@home\|[error] Error reported by file upload server: [loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0] locked by file_upload_handler PID=-1 13.3.2009 21:38:40\|ralph@home\|Temporarily failed upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0: transient upload error 13.3.2009 21:38:40\|ralph@home\|Backing off 3 hr 5 min 27 sec on upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0 ... 15.3.2009 9:34:49\|ralph@home\|Started upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0 15.3.2009 9:34:51\|ralph@home\|[error] Error reported by file upload server: [loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0] locked by file_upload_handler PID=-1 15.3.2009 9:34:51\|ralph@home\|Temporarily failed upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0: transient upload error 15.3.2009 9:34:51\|ralph@home\|Backing off 2 hr 45 min 43 sec on upload of loopbuild_mamaln_full_hb_t303__IGNORE_THE_REST_1te2_99_8360_1_0_0 What is the problem? ID: 4728 · Reply Quote

BigMike Send message Joined: 23 Feb 06 Posts: 63 Credit: 58,730 RAC: 0	Message 4729 - Posted: 15 Mar 2009, 7:56:03 UTC - in response to Message 4725. I have had a good number of ghost work units reportedly downloaded to me but I can't find them. Same here. I have about 40 WU's that R@H thinks are "in progress", but I never saw them. Something's broken... ==Mike Don't believe everything you think. ID: 4729 · Reply Quote

robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0	Message 4730 - Posted: 15 Mar 2009, 12:39:00 UTC Another lockfile problem: https://ralph.bakerlab.org/result.php?resultid=1358791 I'm still running at 95% CPU time but don't think I enabled graphics at any time for this workunit. ID: 4730 · Reply Quote

feet1st Send message Joined: 7 Mar 06 Posts: 313 Credit: 116,623 RAC: 0	Message 4731 - Posted: 15 Mar 2009, 14:39:19 UTC Last modified: 15 Mar 2009, 14:41:19 UTC this mamaln task was preempted at like 98% complete. When BOINC got back to it, it immediately (16 seconds later) finished. No other suspicious messages about the task. Status page shows scheduler is active, but I'm getting these when I try to update. Scheduler request failed: Server returned nothing (no headers, no data) ID: 4731 · Reply Quote

KC0ISW Send message Joined: 17 Feb 06 Posts: 20 Credit: 11,725 RAC: 0	Message 4732 - Posted: 15 Mar 2009, 20:34:55 UTC https://ralph.bakerlab.org/result.php?resultid=1357308 ID: 4732 · Reply Quote

KC0ISW Send message Joined: 17 Feb 06 Posts: 20 Credit: 11,725 RAC: 0	Message 4733 - Posted: 15 Mar 2009, 20:38:24 UTC https://ralph.bakerlab.org/result.php?resultid=1357307 https://ralph.bakerlab.org/result.php?resultid=1357306 https://ralph.bakerlab.org/result.php?resultid=1357304 https://ralph.bakerlab.org/result.php?resultid=1357303 https://ralph.bakerlab.org/result.php?resultid=1357302 https://ralph.bakerlab.org/result.php?resultid=1357274 https://ralph.bakerlab.org/result.php?resultid=1357231 ID: 4733 · Reply Quote

BigMike Send message Joined: 23 Feb 06 Posts: 63 Credit: 58,730 RAC: 0	Message 4734 - Posted: 15 Mar 2009, 22:19:12 UTC - in response to Message 4729. I have had a good number of ghost work units reportedly downloaded to me but I can't find them. Same here. I have about 40 WU's that R@H thinks are "in progress", but I never saw them. It just did it to me again. Three WU's completed...37 non-existent ones "in progress". And I've reached my daily "quota". ==Mike Don't believe everything you think. ID: 4734 · Reply Quote

KC0ISW Send message Joined: 17 Feb 06 Posts: 20 Credit: 11,725 RAC: 0	Message 4735 - Posted: 16 Mar 2009, 5:10:03 UTC https://ralph.bakerlab.org/result.php?resultid=1357309 https://ralph.bakerlab.org/result.php?resultid=1357310 https://ralph.bakerlab.org/result.php?resultid=1357311 https://ralph.bakerlab.org/result.php?resultid=1357312 ID: 4735 · Reply Quote

KC0ISW Send message Joined: 17 Feb 06 Posts: 20 Credit: 11,725 RAC: 0	Message 4736 - Posted: 16 Mar 2009, 5:22:15 UTC - in response to Message 4735. ok my errors maybe because of dep settings i told dep to over bonic see that helps. ID: 4736 · Reply Quote

Paul D. Buck Send message Joined: 14 Jan 09 Posts: 62 Credit: 33,293 RAC: 0	Message 4737 - Posted: 16 Mar 2009, 8:39:12 UTC First death in like forever ... I have run off a ton of tasks recently and only the one death: 1362077 0x006C43DD write attempt to address 0x00000000 Pretty sure this is an address reported previously ... ID: 4737 · Reply Quote

KC0ISW Send message Joined: 17 Feb 06 Posts: 20 Credit: 11,725 RAC: 0	Message 4738 - Posted: 16 Mar 2009, 14:47:46 UTC all my error keep coming from Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x005286C6 read attempt to address 0x06CA4FF8 ID: 4738 · Reply Quote

feet1st Send message Joined: 7 Mar 06 Posts: 313 Credit: 116,623 RAC: 0	Message 4739 - Posted: 16 Mar 2009, 19:55:10 UTC Last modified: 16 Mar 2009, 20:04:45 UTC Stage "unk"?? So... it's "unknown"? (and truncated?) The protein seemed to slip off the pane too. I just saw black until it later came in to view. ID: 4739 · Reply Quote

feet1st Send message Joined: 7 Mar 06 Posts: 313 Credit: 116,623 RAC: 0	Message 4740 - Posted: 16 Mar 2009, 20:12:17 UTC - in response to Message 4735. https://ralph.bakerlab.org/result.php?resultid=1357309 https://ralph.bakerlab.org/result.php?resultid=1357310 https://ralph.bakerlab.org/result.php?resultid=1357311 https://ralph.bakerlab.org/result.php?resultid=1357312 In each case, when your task failed another task was generated for the work unit, and the next person was able to run it without error. Seems to point to some problem on your machine. Overclocking? Dust bunnies clogging cooling system? Memory failing? ID: 4740 · Reply Quote

svincent Send message Joined: 4 Apr 08 Posts: 34 Credit: 51,768 RAC: 0	Message 4742 - Posted: 17 Mar 2009, 16:45:54 UTC A couple of recent compute errors on Mac OS X 10.4.11 Workunit 1210811 ERROR: Cannot open PDB file "1a17_201.pdb" ERROR:: Exit from: src/core/io/pdb/pose_io.cc line: 179 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Workunit 1210764 RROR: Cannot open PDB file "1ad6_197.pdb" ERROR:: Exit from: src/core/io/pdb/pose_io.cc line: 179 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 4742 · Reply Quote

Evan Send message Joined: 23 Dec 07 Posts: 75 Credit: 69,584 RAC: 0	Message 4743 - Posted: 17 Mar 2009, 16:54:21 UTC Last modified: 17 Mar 2009, 16:55:10 UTC A PDB error this time on windows with this one: 1369045 Cannot open PDB file "1xqo_213.pdb" ERROR:: Exit from: ....srccoreiopdbpose_io.cc line: 179 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 4743 · Reply Quote

[Toscana]SickBoy88 Send message Joined: 27 Jan 09 Posts: 3 Credit: 17,581 RAC: 0	Message 4744 - Posted: 18 Mar 2009, 12:53:20 UTC This WU https://ralph.bakerlab.org/result.php?resultid=1371832 Give me a compute error. ID: 4744 · Reply Quote