Message boards : RALPH@home bug list : Minirosetta Beta 3.14
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Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Here is another error ERROR: ERROR: FragmentIO: could not open file frags_w_cs_wt_200.11mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 230 BOINC:: Error reading and gzipping output datafile: default.out On 2083601 Conan |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
2078238 ERROR: ct == final_atoms ERROR:: Exit from: ......srccorescoringrms_util.cc line: 524 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
2092449 ERROR: ERROR: FragmentIO: could not open file frags_w_cs_wt_200.11mers ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 230 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
EvoDude Send message Joined: 18 Feb 06 Posts: 28 Credit: 639,833 RAC: 0 |
33 failures (complete batch) this morning all failing with 'Client Error' https://ralph.bakerlab.org/results.php?userid=527 Example error:- <core_client_version>6.12.33</core_client_version> <![CDATA[ <message> Incorrect function. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2011- 8- 2 10:28:58:] :: BOINC:: Initializing ... ok. [2011- 8- 2 10:28:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev42272.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:5 column:1 - </SFXN5> Tag::read - parse error - file:istream line:5 column:1 - ^ Tag::read - parse error - file:istream line:6 column:1 - </SCOREFXNS> Tag::read - parse error - file:istream line:6 column:1 - ^ Tag::read - parse error - file:istream line:9 column:1 - </FILTERS> Tag::read - parse error - file:istream line:9 column:1 - ^ Tag::read - parse error - file:istream line:13 column:1 - </TASKOPERATIONS> Tag::read - parse error - file:istream line:13 column:1 - ^ Tag::read - parse error - file:istream line:15 column:1 - <FlxbbDesign name=flxbb ncycles=3 sfxn_design=SFXN5 sfxn_relax=SFXN5 SFXN5 clear_all_residues=1 task_operations=limitchi2,layer_allclear_all_residues=0 blueprint="master.blueprint" constraints_NtoC=1.0 /> Tag::read - parse error - file:istream line:15 column:1 - ^ Tag::read - parse error - file:istream line:14 column:1 - <MOVERS> Tag::read - parse error - file:istream line:14 column:1 - ^ Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: ......srcutilitytagTag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
33 failures (complete batch) this morning all failing with 'Client Error' Same here after few seconds 2111200 and others 30 wus.... |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Yes same Error here as well (although I did a few work units that ran OK). Tag::read - parse error, printing backtrace. Tag::read - parse error - file:istream line:5 column:1 - </SFXN5> Tag::read - parse error - file:istream line:5 column:1 - ^ Tag::read - parse error - file:istream line:6 column:1 - </SCOREFXNS> Tag::read - parse error - file:istream line:6 column:1 - ^ Tag::read - parse error - file:istream line:9 column:1 - </FILTERS> Tag::read - parse error - file:istream line:9 column:1 - ^ Tag::read - parse error - file:istream line:13 column:1 - </TASKOPERATIONS> Tag::read - parse error - file:istream line:13 column:1 - ^ Tag::read - parse error - file:istream line:15 column:1 - <FlxbbDesign name=flxbb ncycles=3 sfxn_design=SFXN5 sfxn_relax=SFXN5 SFXN5 clear_all_residues=1 task_operations=limitchi2,layer_allclear_all_residues=0 blueprint="master.blueprint" constraints_NtoC=1.0 /> Tag::read - parse error - file:istream line:15 column:1 - ^ Tag::read - parse error - file:istream line:14 column:1 - <MOVERS> Tag::read - parse error - file:istream line:14 column:1 - ^ Tag::read - parse error - file:istream line:1 column:1 - <dock_design> Tag::read - parse error - file:istream line:1 column:1 - ^ ERROR: false ERROR:: Exit from: ......srcutilitytagTag.cc line: 387 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish On Work units 2112936 2112877 2112918 2112933 2112861 2112941 2112898 2112851 2112893 2112934 2112900 2112847 2112940 Conan |
svincent Send message Joined: 4 Apr 08 Posts: 34 Credit: 51,768 RAC: 0 |
Task 2136909 (3stub_patch_CYCA_1sq2_ProteinInterfaceDesign_11Aug2011_15516_1_0) failed on Mac with a Compute Error. SIGPIPE: write on a pipe with no reader 0 0x00ba68b9 SIGPIPE: write on a pipe with no reader etc. |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
2171363 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00996545 read attempt to address 0x00000000 Engaging BOINC Windows Runtime Debugger... ******************** BOINC Windows Runtime Debugger Version 6.5.0 Dump Timestamp : 08/26/11 09:15:30 Install Directory : C:ProgrammiBOINC Data Directory : C:Documents and SettingsAll UsersDati applicazioniBOINC Project Symstore : https://boinc.bakerlab.org/rosetta/symstore Loaded Library : C:ProgrammiBOINCdbghelp.dll Loaded Library : C:ProgrammiBOINCsymsrv.dll Loaded Library : C:ProgrammiBOINCsrcsrv.dll LoadLibraryA( C:ProgrammiBOINCversion.dll ): GetLastError = 126 Loaded Library : version.dll </stderr_txt> ]]> |
Pieface Send message Joined: 16 Feb 06 Posts: 64 Credit: 203,513 RAC: 0 |
Pls check this one out... Ran for 21.5 ksec and looks like it finished fine after 901 decoys, but someone else had already sent in a bad one, so mine was marker as a 'validate error' ??? 2178636 |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
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[SG-FC] dingdong Send message Joined: 17 Mar 09 Posts: 18 Credit: 5,046,648 RAC: 0 |
All 80 abrelax ended with client error / compute error Task ID 2179800 Name 2WWEA_abrelax_15647_3_0 Workunit 1921159 Created 12 Sep 2011 5:49:30 UTC Sent 12 Sep 2011 5:52:07 UTC Received 12 Sep 2011 14:18:59 UTC Server state Over Outcome Client error Client state Compute error Exit status 1 (0x1) Computer ID 20656 Report deadline 16 Sep 2011 5:52:07 UTC CPU time 2.059213 stderr out <core_client_version>6.12.33</core_client_version> <![CDATA[ <message> Unzul�ssige Funktion. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2011- 9-12 15:49:49:] :: BOINC:: Initializing ... ok. [2011- 9-12 15:49:49:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev42272.zip Unpacking WU data ... ERROR: in::file::boinc_wu_zip 1uaoA.zip does not exist! ERROR:: Exit from: ......srcappspublicboincminirosetta.cc line: 167 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish </stderr_txt> ]]> Validate state Invalid |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Had this one fail Result 2185423 ERROR: in::file::boinc_wu_zip 1uaoA.zip does not exist! ERROR:: Exit from: ......srcappspublicboincminirosetta.cc line: 167 BOINC:: Error reading and gzipping output datafile: default.out Conan |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 912 Credit: 1,892,541 RAC: 294 |
Why we are running a lot of 3.14?? Now last version in 3.17..... |
robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0 |
Could be trying to track down a bug with 3.14 that I saw several times over on Rosetta@Home. If so, something to watch for: Shortly after a checkpoint, the workunit stops using any CPU time at all, WITHOUT telling BOINC it has encountered a problem so that some other workunit can be started instead. If so, the time limit checking cannot run, so the workunit can easily sit there looking like it's running, but not actually doing anything, for many times as long as you've selected for workunits to run. |
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Minirosetta Beta 3.14
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