Message boards : RALPH@home bug list : Rosetta mini 3.18
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[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
New version of rosetta mini. New function or a simply debug? |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
These work units take a very long time to run (around 10 hours on a 6 hour preference) and return very poor credit for the effort (31 points) See WU 2305565 I have another two of these running at the moment and both are already over 9 hours and still going. I also have a 3.17 WU that is over 9 hours as well. Most only run 1 to 2 hours. Conan |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Well I have had another 2 work units go to 10 hours 11 minutes before reporting as successful but the points are even lower than before WU 2306108 gave 8.77 points WU 2306211 gave 17.87 points I have aborted WU 2306685 at 27,849 seconds (over 7 hours) and WU 2306474 at 25,481 seconds (7 hours) as they were going to take over 10 hours and give very little in return. My preference is for 6 hours so longer than that I have a close look. All long running work units have been on my two Linux machines, Windows not affected. Also it has been both 3.17 and 3.18 work unit types. Conan |
robertmiles Send message Joined: 13 Jan 09 Posts: 103 Credit: 331,865 RAC: 0 |
These work units take a very long time to run (around 10 hours on a 6 hour preference) and return very poor credit for the effort (31 points) These could be looking for a bug I saw earlier in 3.14. If so, something it would be useful to watch for: The workunit stops using any CPU time at all, WITHOUT telling the BOINC manager that there is a problem so that another workunit can run instead. If that's the problem, the workunit can easily sit there not really running for days, since the time limit detection can't run either. |
Rocco Moretti Volunteer moderator Project developer Project scientist Send message Joined: 18 May 10 Posts: 11 Credit: 30,188 RAC: 0 |
New version of rosetta mini. New function or a simply debug? As mentioned by cmiles over in the Rosetta@home forums, minirosetta 3.18 is identical to minirosetta_beta 3.17, and is identical to the version (3.17) currently being run on Rosetta@home. (The difference in numbering is because of technical reasons.) |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
A few error are starting to show up today First two are on Linux WU 2316336 shows this ERROR: seqpos <= size() ERROR:: Exit from: src/core/conformation/Conformation.hh line: 267 BOINC:: Error reading and gzipping output datafile: default.out WU 2049320 shows ERROR: Illegal value specified for option -run: protocol : medal_abinitio Next two are on Windows WU 2316455 and WU 2316209 Both show this ERROR: seqpos <= size() ERROR:: Exit from: d:boinc_buildminirosetta_beta_3.17rosetta_sourcesrccore/conformation/Conformation.hh line: 267 BOINC:: Error reading and gzipping output datafile: default.out Conan |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
Thank for the answer!! |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
Thanks for the answer!! |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
A few more Windows errors WU 2305445 - Unhandled Exception Record - Reason: Breakpoint Encountered (0x80000003) at address 0x7C90120E WU 2304479 "Maximum Elapsed Time Exceeded" WU 2325467 and WU 2324219 ERROR: seqpos <= size() ERROR:: Exit from: d:boinc_buildminirosetta_beta_3.17rosetta_sourcesrccore/conformation/Conformation.hh line: 267 BOINC:: Error reading and gzipping output datafile: default.out Conan |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
Some validate errors 2338233 2338190 BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]> Validate state Invalid |
Trotador Send message Joined: 7 May 10 Posts: 33 Credit: 14,751,677 RAC: 0 |
Hi Many validation errors today, around 90 out of 320 units, most of them finish in less of 100-200 seconds with few o them reaching 600 or 1000 seconds. So far all the wingmen also failed in these workunits. Both in Linux and in W7. Regarding the extra long units with very low scores, I think they all are TO538..., It happened firtst with the beta 3.17 (TBC) and the subsequent releases behave equally. I tend lately to abort them. regards Edit: I've noticed that many units with validation errors are over 200 seconds |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
2361173 ERROR: seqpos <= size() ERROR:: Exit from: d:boinc_buildminirosetta_beta_3.17rosetta_sourcesrccore/conformation/Conformation.hh line: 267 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish |
[SG-FC] dingdong Send message Joined: 17 Mar 09 Posts: 18 Credit: 5,046,648 RAC: 0 |
Work Unit ID 2074393: 50 minutes without action, cpu - load = 0% |
Trotador Send message Joined: 7 May 10 Posts: 33 Credit: 14,751,677 RAC: 0 |
2KZU_... units are erroring just at the start ERROR: in::file::boinc_wu_zip 4-boinc-submit/2KZU_chromodomain.zip does not exist! ERROR:: Exit from: src/apps/public/boinc/minirosetta.cc line: 168 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish a problem with the nemae of the files |
svincent Send message Joined: 4 Apr 08 Posts: 34 Credit: 51,768 RAC: 0 |
Task 2379638 gave a Validate Error, but without anything noteworthy appearing in the log file. Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]> Validate state Invalid |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
Validate errors 2429175 2429148 # cpu_run_time_pref: 7200 ====================================================== DONE :: 32 starting structures 7150.81 cpu seconds This process generated 32 decoys from 32 attempts ====================================================== BOINC :: WS_max 8.35789e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
Heaps of bugs/ errors The following error appeared on one Windows machine but seems to now be processing OK WU 2435485 WU 2436196 WU 2436362 WU 2436427 WU 2436489 WU 2436965 app_version download error: couldn't get input files: <file_xfer_error> <file_name>minirosetta_database_rev45517.zip</file_name> <error_code>-120</error_code> <error_message>signature verification failed</error_message> </file_xfer_error> WU 2436832 had the following error ERROR:Option matching -in:file:boinc_wu_fix:zip not found in command line top-level context ALL of the following Linux Work Units have VALIDATE ERRORS WU 2441745 WU 2441633 WU 2441023 WU 2439837 WU 2439085 WU 2438445 WU 2438250 WU 2438113 WU 2437946 WU 2437831 WU 2437828 WU 2437700 WU 2437662 WU 2433162 WU 2433080 WU 2441742 WU 2441538 WU 2441458 WU 2441308 WU 2441223 WU 2440847 WU 2440310 WU 2438270 WU 2437847 WU 2437609 WU 2437451 WU 2437440 WU 2437361 WU 2437278 WU 2436307 WU 2429070 WU 2429068 There seems to be a problem Conan |
Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0 |
ALL LINUX WORK UNITS GET VALIDATE ERRORS NONE are successful Most Windows WUs validate but some are now starting get validate errors as well. Conan |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
Despite random validate error on win7, i see this: I set 1h my wus, some wus run for more than 3h. The 1h wu gives me from 13 to 16 points, the 3h gives me from 4 to 7 points |
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 910 Credit: 1,892,541 RAC: 294 |
This batch seems very good! No one error... |
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Rosetta mini 3.18
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