Rosetta Mini Beta 3.19

Author	Message
[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5436 - Posted: 20 Dec 2011, 6:34:52 UTC New version is out. Bugs here. What's new? ID: 5436 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5445 - Posted: 17 Jan 2012, 21:06:35 UTC All errors: 2515624 2515627 ERROR: ERROR: FragmentIO: could not open file aaT0593.9mers ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 5445 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5446 - Posted: 24 Jan 2012, 21:23:34 UTC 2519515 2519516 2519517 <core_client_version>7.0.8</core_client_version> <![CDATA[ <message> Funzione non corretta. (0x1) - exit code 1 (0x1) </message> <stderr_txt> [2012- 1-24 21:34:31:] :: BOINC:: Initializing ... ok. [2012- 1-24 21:34:31:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached ERROR: Illegal value specified for option -run:protocol : star ID: 5446 · Reply Quote

Snagletooth Send message Joined: 4 May 07 Posts: 67 Credit: 134,427 RAC: 0	Message 5447 - Posted: 28 Jan 2012, 15:33:14 UTC Looks like a bad batch: 2XY2_boinc_01af25c3445c8a72c5666274d71d0bc4_abinitio_cmiles_IGNORE_THE_REST_16338_6 ERROR: unrecognized aa NAG ERROR:: Exit from: src/core/io/pdb/file_data.cc line: 643 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish 2XZR_boinc_2XZR_abinitio_a14fd156c09cffe3e75b353e016d12e9_abinitio_cmiles_IGNORE_THE_REST_16356_7 ERROR: ERROR: FragmentIO: could not open file aa2XZR.9mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Best, Snags ID: 5447 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5448 - Posted: 30 Jan 2012, 9:27:03 UTC 2522024 2522026 2522022 Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 471 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 5448 · Reply Quote

Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0	Message 5449 - Posted: 31 Jan 2012, 8:10:39 UTC - in response to Message 5448. 2522024 2522026 2522022 Unpacking data: ../../projects/ralph.bakerlab.org/T0635_boinc_T0635_abinitio_constrained_cd3563403a79affdc91f53063c1c230f_abinitio_constrained_cmiles.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 471 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Same Error for me on this WU ID: 5449 · Reply Quote

Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0	Message 5450 - Posted: 2 Feb 2012, 4:45:16 UTC Last modified: 2 Feb 2012, 4:47:01 UTC Getting Validate Errors on ALL "ferredoxin" Work Unit types. See 2522556 2522676 2522683 2522907 I have six of these still running but I doubt they will validate. Conan ID: 5450 · Reply Quote

TPCBF Send message Joined: 20 Jun 11 Posts: 30 Credit: 27,776 RAC: 0	Message 5451 - Posted: 2 Feb 2012, 5:39:33 UTC - in response to Message 5450. Getting Validate Errors on ALL "ferredoxin" Work Unit types. See 2522556 2522676 2522683 2522907 I have six of these still running but I doubt they will validate. Conan I just finshed one of those and it immediately validated just fine (it was so far also the only one I got on the one host that I have RALPH@home runnig) Ralf ID: 5451 · Reply Quote

Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0	Message 5452 - Posted: 2 Feb 2012, 10:07:02 UTC - in response to Message 5450. Getting Validate Errors on ALL "ferredoxin" Work Unit types. See 2522556 2522676 2522683 2522907 I have six of these still running but I doubt they will validate. Conan Well a couple did validate but the rest did not Validate Errors on 2522936 2522958 2522951 Also had this error ERROR: unknown atom_name: ASN H ERROR:: Exit from: src/core/chemical/ResidueType.cc line: 1673 BOINC:: Error reading and gzipping output datafile: default.out On This WU It was a 2FTX work unit type. Plus this error ERROR: [ERROR] Unable to open constraints file: constraints/nlp_10A.csts ERROR:: Exit from: ......srccorescoringconstraintsConstraintIO.cc line: 471 BOINC:: Error reading and gzipping output datafile: default.out On This WU Conan ID: 5452 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5456 - Posted: 7 Feb 2012, 20:35:43 UTC 2523917 Unpacking zip data: ../../projects/ralph.bakerlab.org/minirosetta_database_rev46494.zip Unpacking WU data ... Unpacking data: ../../projects/ralph.bakerlab.org/test3_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... ERROR: Value of inactive option accessed: -in:file:frag9 ID: 5456 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5459 - Posted: 11 Feb 2012, 2:40:52 UTC 2524518 2524519 2524517 After few seconds on win 7: ERROR: Hybridize is not known to the MoverFactory. Was it registered via a MoverRegistrator in one of the init.cc files (devel/init.cc or protocols/init.cc)? ERROR:: Exit from: ......srcprotocolsmovesMoverFactory.cc line: 99 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 5459 · Reply Quote

[VENETO] boboviz Send message Joined: 9 Apr 08 Posts: 913 Credit: 1,892,541 RAC: 294	Message 5460 - Posted: 11 Feb 2012, 8:38:54 UTC All ProteinDesignInterface wus have the old problem with graphic.... ID: 5460 · Reply Quote

Conan Send message Joined: 16 Feb 06 Posts: 364 Credit: 1,368,421 RAC: 0	Message 5461 - Posted: 12 Feb 2012, 23:02:44 UTC Every Work Unit I ran on my Linux machines ran for over 8 to 9 hours on a 6 hour preference. Reported time was 6 hours. Where is the other 3 hours? Windows ran for the reported time. Seems a bit strange. Conan ID: 5461 · Reply Quote