Posts by dekim

21) Message boards : News : Rosetta version 4.18 released for testing (Message 6766) Posted 30 Apr 2020 by dekim Post: Please provide feedback in the discussion thread.
22) Message boards : News : New application version 4.17 graphics has issues. (Message 6765) Posted 30 Apr 2020 by dekim Post: yes, there is a bit of a wait for the graphics to initialize.
23) Message boards : News : New application version 4.17 graphics has issues. (Message 6764) Posted 30 Apr 2020 by dekim Post: I posted another update, 4.18. This version should be more robust. The improvements in this update include: 1. The use of a lock file so only one job extracts the database into the project directory while other jobs wait, including graphics. Once the database is extracted, all jobs read the same database. 2. Checkpointing added to the Rosetta comparative modeling method. Please test these updates and let us know if there are any issues. Thanks!
24) Message boards : News : New application version 4.17 graphics has issues. (Message 6750) Posted 28 Apr 2020 by dekim Post: This issue is happening with the mac platform. I'm not sure what other platforms may also have this issue but any feedback is appreciated. I'm about to submit more tests so I can debug. There's also issues with the linux 64bit platform. Thanks.
25) Message boards : News : New application version 4.17 graphics has issues. (Message 6747) Posted 28 Apr 2020 by dekim Post: A new application was released that includes improvements to the database extraction method. Unfortunately, there is an issue with the graphics application in this update. We are working on a fix.
26) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6733) Posted 24 Apr 2020 by dekim Post: I queued up more jobs. I'm not sure what is happening with the very short run failures.
27) Message boards : News : Testing a switch to using SSL (Secure Socket Layer) (Message 6729) Posted 23 Apr 2020 by dekim Post: Please let me know if these issues persist.
28) Message boards : RALPH@home bug list : Rosetta 4.12+ (Message 6695) Posted 6 Apr 2020 by dekim Post: I'm not sure why your client is getting the 64bit wrapper of our "minirosetta" app which is an older version of rosetta that is still used for forward folding experiments. I'll see if I can build the 64bit version of the old app and see if that helps. So this is not an issue with the "rosetta" app? The "rosetta" app is a 64bit build.
29) Message boards : RALPH@home bug list : Rosetta 4.12+ (Message 6690) Posted 6 Apr 2020 by dekim Post: We will likely issue jobs with lower memory requirements in the near future.
30) Message boards : Feedback : New server (Message 6251) Posted 8 Dec 2017 by dekim Post: Looks like next week and unless something else comes up, it SHOULD HAPPEN :) It will be just like the R@h server, hardware and software upgrades.
31) Message boards : Feedback : New server (Message 6250) Posted 7 Dec 2017 by dekim Post: Sorry, things keep coming up. I'll hopefully get a chance to work on it soon.
32) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6238) Posted 21 Nov 2017 by dekim Post: Not sure why but this error is from a very old app version.
33) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6231) Posted 21 Nov 2017 by dekim Post: Finally finished the builds. It took some time because we updated the source again to include additional bug fixes. I also updated the android version. We'll submit some tests soon.
34) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6226) Posted 3 Nov 2017 by dekim Post: Sorry! I've canceled this test batch. Looks like a database issue I'll have to troubleshoot.
35) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6214) Posted 2 Oct 2017 by dekim Post: We are still actively using 3.73 for forward folding and for Robetta structure prediction.
36) Message boards : RALPH@home bug list : Rosetta mini beta and/or android 3.61-3.83 (Message 6212) Posted 2 Oct 2017 by dekim Post: The latest boinc client release, 7.8.2 is buggy. The BOINC developers are working on a fix but not knowing how long it may take, I will be testing application side fixes for the minirosetta app. The main issue is that work may run in dirty slot directories and when this happens our application crashes. It's causing a 10-20% increase in failures.
37) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6207) Posted 29 Aug 2017 by dekim Post: Aside from this issue, are the graphics ok?
38) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6203) Posted 22 Aug 2017 by dekim Post: Yes, I just updated the app to 4.02 to address this. The issue was that we are using the new BOINC graphics api which uses a new to us font rendering framework. The BOINC ttfont.cpp code necessary for the fonts to work does not resolve the filename (using the boinc_resolve_filename api function) of the ttf font file so the graphics app would crash under the boinc client but not with a local test. This is because we passed the current run directory to the ttf_load_fonts function and not the project directory. Luckily it didn't take me that long to find the cause of this bug and hopefully I fixed it.
39) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6201) Posted 21 Aug 2017 by dekim Post: Sorry, I was busy during the weekend and only added a small batch just in case there were issues. I also noticed the assimilator and validator wasn't turned on for the new app. The latest app update will be named "rosetta". This is mainly because it is not backwards compatible with the current app for "rosetta scripts XML" protocols.
40) Message boards : RALPH@home bug list : Rosetta_beta 4.0+ (Message 6198) Posted 18 Aug 2017 by dekim Post: Please post issues/bugs regarding the 'rosetta_beta_4.0+' application versions here.

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