Posts by Conan

41) Message boards : RALPH@home bug list : Minirosetta 3.49 (Message 5692) Posted 14 Nov 2013 by Conan Post: This is my first WU since the 20th Feb 2013, I only received 1 but I hope it runs OK. Conan All OK no errors in the one that I received. Conan
42) Message boards : RALPH@home bug list : Minirosetta 3.49 (Message 5691) Posted 14 Nov 2013 by Conan Post: This is my first WU since the 20th Feb 2013, I only received 1 but I hope it runs OK. Conan
43) Message boards : Feedback : Create a Profile (Message 5649) Posted 26 Feb 2013 by Conan Post: Also can't edit an existing Profile as getting a Database error. Not Found The requested URL /create_profile.php was not found on this server. Apache/2.2.3 (Red Hat) Server at ralph.bakerlab.org Port 80 Conan
44) Message boards : Cafe RALPH : ATA (Message 5648) Posted 26 Feb 2013 by Conan Post: G'Day to you Searcher. The project has been running since the 16 Feb 2006, so I would think that there are numerous ATA members. As this is the Alpha test bed for Rosetta, not every one wants to do Alpha projects, but most ATA members have been here at one time or another. Conan
45) Message boards : RALPH@home bug list : Minirosetta beta 3.45 (Message 5638) Posted 8 Feb 2013 by Conan Post: This Work Unit was marked as successful but only granted 1.15 credits for over 11,000 seconds of work. It appears to have completed 99 decoys shut down and then restarted to run 1 decoy. See WU 2861847 Conan
46) Message boards : RALPH@home bug list : Minirosetta beta 3.45 (Message 5633) Posted 6 Feb 2013 by Conan Post: Have had 2 successful work units but both ran for far longer than my preferences, over 36,000 seconds with a preference of 21,600 seconds (6 hours). They only granted 20 credits for the effort, very poor. See WU 2858623 and WU 2858534 WU 2858623 ran for 36,379.95 seconds (10.11 hours), claimed 230.42 credits, got 20 credits. WU 2858534 ran for 36,512.02 seconds (10.14 hours), claimed 250.99 credits, got 20 credits. With the granted credits and the huge error count, this current work unit batch is very sick and needs a lot of work to fix. Conan
47) Message boards : RALPH@home bug list : Minirosetta beta 3.45 (Message 5632) Posted 6 Feb 2013 by Conan Post: Linux 64 bit had this error ERROR:: Exit from: src/core/chemical/ResidueTypeSet.cc line: 450 BOINC:: Error reading and gzipping output datafile: default.out See WU 2858890 Conan
48) Message boards : RALPH@home bug list : Minirosetta beta 3.45 (Message 5630) Posted 5 Feb 2013 by Conan Post: Getting the same "Out Of Memory" errors that others are getting on ALL work on my Windows machines. Downloads per file are 72 MB, which is getting up there. I have seen up to 1.4 GB of RAM usage on Linux and 860 MB (and increasing) on Windows after just 37 minutes. On Windows this rises to 1.4 GB after 1 hour. Linux 64 bit has a different error ERROR: seqpos <= size() ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish See WU 2858596 WU 2858365 WU 2858385 Also "SIGSEGV" Segmentation Violation See WU 2858688 ALL work units so far have failed. Conan
49) Message boards : RALPH@home bug list : Minirosetta beta 3.43 (Message 5617) Posted 19 Nov 2012 by Conan Post: Though I am not running a screen saver, so I don't know of those issues, I have had 3 Work Units fail with the following message <message> Maximum disk usage exceeded </message> All only ran for less than 100 seconds and all were on a 32 bit Windows XP machine. See 2857255 2857241 2857216 Conan
50) Message boards : RALPH@home bug list : Minirosetta beta 3.42 (Message 5586) Posted 5 Oct 2012 by Conan Post: Nearly all my work units have failed with at least 3 different errors WU 2851574 on Windows XP 32 bit had the following error ERROR: Attempting to initiate job distribution for input job 'S', but the generated pose has no residues.make sure you specified a valid input PDB, silent file or database. ERROR:: Exit from: ......srcprotocolsjd2Parser.cc line: 49 BOINC:: Error reading and gzipping output datafile: default.out WU 2851410 on Linux 64 bit had the following error ERROR:: Exit from: src/core/io/raw_data/DisulfideFile.cc line: 143 BOINC:: Error reading and gzipping output datafile: default.out All the next work units had the error following their listing WU 2851575 on Win XP 32 bit WU 2851563 on Win XP 32 bit WU 2851351 on Win XP 32 bit WU 2851260 on Win XP 32 bit WU 2851247 on Win XP 32 bit WU 2851431 on Win XP 32 bit WU 2851456 on Win XP 32 bit WU 2851478 on Win XP 32 bit WU 2851481 on Win XP 32 bit WU 2851284 on Linux Fedora 16 64 bit WU 2851263 on Linux Fedora 16 64 bit WU 2851290 on Linux Fedora 16 64 bit WU 2851484 on Linux Fedora 16 64 bit ERROR: Unable to open Rosetta Scripts XML file: 'hybridize0_C1.xml'. ERROR:: Exit from: ......srcprotocolsjd2DockDesignParser.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out Conan
51) Message boards : RALPH@home bug list : Minirosetta beta 3.42 (Message 5584) Posted 3 Oct 2012 by Conan Post: Nearly all work units failed to run Linux 64 bit Work Unit 2850041 ERROR:: Exit from: src/core/io/raw_data/DisulfideFile.cc line: 143 BOINC:: Error reading and gzipping output datafile: default.out Similar error on Windows 32 bit Work Unit 2850422 ERROR:: Exit from: ......srccoreioraw_dataDisulfideFile.cc line: 143 BOINC:: Error reading and gzipping output datafile: default.out Linux and Windows 2849884 2850235 2849912 2850587 2850705 2850489 ERROR: Unable to open Rosetta Scripts XML file: 'hybridize0_C1.xml'. ERROR:: Exit from: ......srcprotocolsjd2DockDesignParser.cc line: 144 BOINC:: Error reading and gzipping output datafile: default.out Conan
52) Message boards : RALPH@home bug list : MiniRosetta Beta 3.41 (Message 5573) Posted 28 Aug 2012 by Conan Post: Have also had same error as others ERROR: bond length sets added: ERROR:: Exit from: ......srccorescoringmmMMBondAngleLibrary.cc line: 188 See 2822102 2822128 Conan
53) Message boards : RALPH@home bug list : MiniRosetta Beta 3.41 (Message 5571) Posted 28 Aug 2012 by Conan Post: Similar Error on these three WUs, all Linux and all fail to validate; See 2819851 2820599 2821700 ERROR: e residue bond angle parameters not supported ERROR:: Exit from: src/core/scoring/mm/MMBondAngleLibrary.cc line: 188 Conan
54) Message boards : RALPH@home bug list : MiniRosetta Beta 3.26 (Message 5567) Posted 25 Aug 2012 by Conan Post: Getting pages of errors ERROR: of three residue bond angle parameters not supported ERROR:: Exit from: src/core/scoring/mm/MMBondAngleLibrary.cc line: 188 called boinc_finish Both Validate errors and Compute Errors, very short run times See WU 2813222 And WU 2813342 Conan
55) Message boards : RALPH@home bug list : MiniRosetta Beta 3.41 (Message 5564) Posted 24 Aug 2012 by Conan Post: Same error for me on these two WU 2798112 WU 2800921 ERROR: Fatal SOGFunc_Impl error. ERROR:: Exit from: ......srccorescoringconstraintsSOGFunc_Impl.cc line: 181 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish Conan
56) Message boards : RALPH@home bug list : MiniRosetta Beta 3.26 (Message 5551) Posted 10 Jul 2012 by Conan Post: Just checked and every Work Unit still in progress has been cancelled, so if I process them they will get Validate errors. Usually if the project cancels a work unit it will be cancelled on the volunteers computer as well and then it wont get processed and waste CPU time. Not the case here. Even the work units that have been completed and marked as successful have been cancelled as well. Can't work that out. Perhaps Project Admin have realised that we are processing 3.26 and Rosetta is running 3.31 so cancelled all remaining work. Anyway aborting all remaining jobs so as not to waste any more CPU cycles for no result. Conan
57) Message boards : RALPH@home bug list : MiniRosetta Beta 3.26 (Message 5550) Posted 10 Jul 2012 by Conan Post: What's going on??? All my results that are being returned from the 9th are now getting Validate Errors. The Work Units have been Cancelled which stops the validation process but the work I already have is still allowed to process and then not get any credit on returning the result. I have wasted 3 days worth of processing (6 Hour run time preference). I will let a couple more complete and if they get the same error I will Abort the rest. See 2465392 2435521 2464761 Conan
58) Message boards : RALPH@home bug list : MiniRosetta Beta 3.26 (Message 5549) Posted 7 Jul 2012 by Conan Post: Validate Error on This Work Unit Conan
59) Message boards : Number crunching : Milestones (Message 5544) Posted 24 Jun 2012 by Conan Post: After over 6 YEARS I have finally passed 1,000,000 cobblestones, Woo Hoo, Yippee, You Beauty, Wunderbar, Great, Terrific, Another Round Of Drinks, About Bloody Time. Well done, Conan!!! Thanks boboviz, if the work was more steady then it would of taken a lot less time, I am happy getting this milestone. Conan
60) Message boards : Number crunching : Milestones (Message 5542) Posted 23 Jun 2012 by Conan Post: After over 6 YEARS I have finally passed 1,000,000 cobblestones, Woo Hoo, Yippee, You Beauty, Wunderbar, Great, Terrific, Another Round Of Drinks, About Bloody Time. It has been a long slog but I have gotten there. Good luck to others trying to reach their milestones. Conan

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